The NrfH Cytochrome c Quinol Dehydrogenase

Indoleamine 2,3-dioxygenase (IDO) and tryptophan 2,3-dioxygenase (TDO) are heme-containing enzymes from a small family of homologous enzymes. Despite both catalyzing the dioxygenation of l-tryptophan, the first step in the kynurenine pathway, the sequence similarity between TDO and IDO is low. Alignment of sequences across this family of enzymes is only possible on the basis of their structures. Human IDO shows activity toward a wider range of substrates than TDO, and is found throughout the body, while TDO is limited to the liver and epidermis in mammals. To date, no functional prokaryotic IDO has been identified, while TDO is found in many bacteria. TDO and IDO have been implicated in a number of human physiological conditions, including suppression of T-cell proliferation and the immune escape of cancers, making them attractive targets for drug discovery. 3D Structure Keywords: kynurenine pathway; l-tryptophan; dioxygen; crystallography; immune response; heme

[1]  I. Efimov,et al.  The role of serine 167 in human indoleamine 2,3-dioxygenase: a comparison with tryptophan 2,3-dioxygenase. , 2008, Biochemistry.

[2]  L. Ghamsari,et al.  A kinetic, spectroscopic, and redox study of human tryptophan 2,3-dioxygenase. , 2008, Biochemistry.

[3]  S. Yeh,et al.  Human tryptophan dioxygenase: a comparison to indoleamine 2,3-dioxygenase. , 2007, Journal of the American Chemical Society.

[4]  Kenneth A Johnson,et al.  The second enzyme in pyrrolnitrin biosynthetic pathway is related to the heme-dependent dioxygenase superfamily. , 2007, Biochemistry.

[5]  L. Jermiin,et al.  Characterization of an indoleamine 2,3-dioxygenase-like protein found in humans and mice. , 2007, Gene.

[6]  D. Munn,et al.  Indoleamine 2,3-dioxygenase and tumor-induced tolerance. , 2007, The Journal of clinical investigation.

[7]  J. Khan,et al.  Nicotinamide adenine dinucleotide metabolism as an attractive target for drug discovery , 2007, Expert opinion on therapeutic targets.

[8]  C. MacKenzie,et al.  Role of indoleamine 2,3-dioxygenase in antimicrobial defence and immuno-regulation: tryptophan depletion versus production of toxic kynurenines. , 2007, Current drug metabolism.

[9]  M. Rizzi,et al.  Biochemical mechanisms leading to tryptophan 2,3-dioxygenase activation. , 2007, Archives of insect biochemistry and physiology.

[10]  G. Prendergast,et al.  Inhibition of indoleamine 2,3-dioxygenase in dendritic cells by stereoisomers of 1-methyl-tryptophan correlates with antitumor responses. , 2007, Cancer research.

[11]  Sarah J. Thackray,et al.  Molecular insights into substrate recognition and catalysis by tryptophan 2,3-dioxygenase , 2007, Proceedings of the National Academy of Sciences.

[12]  Tadhg P Begley,et al.  Crystal structure and mechanism of tryptophan 2,3-dioxygenase, a heme enzyme involved in tryptophan catabolism and in quinolinate biosynthesis. , 2007, Biochemistry.

[13]  H. Sugimoto,et al.  Crystallization and preliminary crystallographic studies of human indoleamine 2,3-dioxygenase. , 2006, Acta crystallographica. Section F, Structural biology and crystallization communications.

[14]  Takashi Otsuki,et al.  Crystal structure of human indoleamine 2,3-dioxygenase: catalytic mechanism of O2 incorporation by a heme-containing dioxygenase. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[15]  O. Takikawa Biochemical and medical aspects of the indoleamine 2,3-dioxygenase-initiated L-tryptophan metabolism. , 2005, Biochemical and biophysical research communications.

[16]  Michael Platten,et al.  Treatment of Autoimmune Neuroinflammation with a Synthetic Tryptophan Metabolite , 2005, Science.

[17]  A. Munro,et al.  Redox and spectroscopic properties of human indoleamine 2,3-dioxygenase and a His303Ala variant: implications for catalysis. , 2005, Biochemistry.

[18]  M. Takemura,et al.  Changes in quinolinic acid production and its related enzymes following D-galactosamine and lipopolysaccharide-induced hepatic injury. , 2004, Archives of biochemistry and biophysics.

[19]  B. Frick,et al.  Interferon-?-induzierter Tryptophanabbau: Bedeutung fr Immunologie und Psychiatrie , 2004 .

[20]  R. Truscott,et al.  Asp274 and His346 Are Essential for Heme Binding and Catalytic Function of Human Indoleamine 2,3-Dioxygenase* , 2003, Journal of Biological Chemistry.

[21]  D. Fuchs,et al.  Interferon-γ-Induced Conversion of Tryptophan: Immunologic and Neuropsychiatric Aspects , 2003 .

[22]  U. Grohmann,et al.  Tolerance, DCs and tryptophan: much ado about IDO. , 2003, Trends in immunology.

[23]  E. Ragazzi,et al.  Kynurenine pathway enzymes in different species of animals. , 2003, Advances in experimental medicine and biology.

[24]  D. Pawlak,et al.  Kidney and liver kynurenine pathway enzymes in chronic renal failure. , 2003, Advances in experimental medicine and biology.

[25]  E. Ragazzi,et al.  Tryptophan metabolism along the kynurenine pathway in rats. , 2003, Advances in experimental medicine and biology.

[26]  E. Ragazzi,et al.  Tryptophan metabolism in rabbits. , 2003, Advances in experimental medicine and biology.

[27]  D. Keskin,et al.  Tryptophan catabolism and T cell responses. , 2003, Advances in experimental medicine and biology.

[28]  D. Keskin,et al.  Indoleamine 2,3-dioxygenase, immunosuppression and pregnancy. , 2002, Journal of reproductive immunology.

[29]  J. Carver,et al.  Oxidation products of 3-hydroxykynurenine bind to lens proteins: relevance for nuclear cataract. , 1997, Experimental eye research.

[30]  J. Dawson,et al.  Heme-Containing Oxygenases. , 1996, Chemical reviews.

[31]  H. T. Jones,et al.  Novel tryptophan dioxygenase inhibitors and combined tryptophan dioxygenase/5-HT reuptake inhibitors , 1996 .

[32]  D. T. Sawyer,et al.  Electron-transfer thermodynamics and bonding for the superoxide (O2.-), dioxygen (.O2.), and hydroxy (.OH) adducts of (tetrakis(2,6-dichlorophenyl)porphinato)iron, -manganese, and -cobalt in dimethylformamide , 1990 .

[33]  M. Sono Spectroscopic and equilibrium studies of ligand and organic substrate binding to indolamine 2,3-dioxygenase. , 1990, Biochemistry.

[34]  M. Sono,et al.  Enzyme kinetic and spectroscopic studies of inhibitor and effector interactions with indoleamine 2,3-dioxygenase. 1. Norharman and 4-phenylimidazole binding to the enzyme as inhibitors and heme ligands. , 1989, Biochemistry.

[35]  M. Sono Enzyme kinetic and spectroscopic studies of inhibitor and effector interactions with indoleamine 2,3-dioxygenase. 2. Evidence for the existence of another binding site in the enzyme for indole derivative effectors. , 1989, Biochemistry.

[36]  O. Hayaishi,et al.  [26] Indoleamine 2,3-dioxygenase , 1987 .

[37]  M. Sono Spectroscopic and equilibrium properties of the indoleamine 2,3-dioxygenase-tryptophan-O2 ternary complex and of analogous enzyme derivatives. Tryptophan binding to ferrous enzyme adducts with dioxygen, nitric oxide, and carbon monoxide. , 1986, Biochemistry.

[38]  J. Dawson,et al.  Extensive studies of the heme coordination structure of indoleamine 2,3-dioxygenase and of tryptophan binding with magnetic and natural circular dichroism and electron paramagnetic resonance spectroscopy. , 1984, Biochimica et biophysica acta.

[39]  O. Hayaishi,et al.  Inhibition of indoleamine 2,3-dioxygenase and tryptophan 2,3-dioxygenase by β-carboline and indole derivatives☆ , 1984 .

[40]  Y. Ishimura,et al.  Regulatory control and catalytic mechanisms of L-tryptophan 2,3-dioxygenase (pyrrolase). , 1980, Advances in enzyme regulation.

[41]  K. Rajagopalan,et al.  Studies of the copper and heme cofactors of pseudomonad L-tryptophan-2,3-dioxygenase by electron paramagnetic resonance spectroscopy. , 1973, Archives of biochemistry and biophysics.

[42]  Y. Ishimura [52] l-tryptophan 2,3-dioxygenase (tryptophan pyrrolase) (pseudomonas fluorescens) , 1970 .