GeneAlign: a coding exon prediction tool based on phylogenetical comparisons
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Chuan Yi Tang | Chun-Yuan Lin | Shu Ju Hsieh | Ning Han Liu | Wei Yuan Chow | C. Tang | Chun-Yuan Lin | W. Chow | N. Liu | S. J. Hsieh
[1] L. Pachter,et al. SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model. , 2003, Genome research.
[2] Terrence S. Furey,et al. The UCSC Genome Browser Database , 2003, Nucleic Acids Res..
[3] Chuan Yi Tang,et al. Comparative exon prediction based on heuristic coding region alignment , 2005, 8th International Symposium on Parallel Architectures,Algorithms and Networks (ISPAN'05).
[4] Adam Yao,et al. Super Pairwise Alignment (SPA): An Efficient Approach to Global Alignment for Homologous Sequences , 2003, J. Comput. Biol..
[5] R Staden. Computer methods to locate signals in nucleic acid sequences , 1984, Nucleic Acids Res..
[6] D. Black. Protein Diversity from Alternative Splicing A Challenge for Bioinformatics and Post-Genome Biology , 2000, Cell.
[7] G. Rubin,et al. A computer program for aligning a cDNA sequence with a genomic DNA sequence. , 1998, Genome research.
[8] Daniel G. Brown,et al. ExonHunter: a comprehensive approach to gene finding , 2005, ISMB.
[9] D. Church,et al. Spidey: a tool for mRNA-to-genomic alignments. , 2001, Genome research.
[10] P. Rouzé,et al. Current methods of gene prediction, their strengths and weaknesses. , 2002, Nucleic acids research.
[11] Ian Korf,et al. Integrating genomic homology into gene structure prediction , 2001, ISMB.
[12] S. Salzberg,et al. GeneSplicer: a new computational method for splice site prediction. , 2001, Nucleic acids research.
[13] S. Karlin,et al. Prediction of complete gene structures in human genomic DNA. , 1997, Journal of molecular biology.
[14] Wei Zhu,et al. Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus , 2004, Bioinform..
[15] Irmtraud M. Meyer,et al. Gene structure conservation aids similarity based gene prediction. , 2004, Nucleic acids research.
[16] R. Durbin,et al. GeneWise and Genomewise. , 2004, Genome research.
[17] Steven Salzberg,et al. JIGSAW: integration of multiple sources of evidence for gene prediction , 2005, Bioinform..
[18] S. Henikoff,et al. Amino acid substitution matrices from protein blocks. , 1992, Proceedings of the National Academy of Sciences of the United States of America.
[19] Steven L Salzberg,et al. Computational discovery of internal micro-exons. , 2003, Genome research.
[20] M. Brent,et al. Recent advances in gene structure prediction. , 2004, Current opinion in structural biology.
[21] Thomas D. Wu,et al. GMAP: a genomic mapping and alignment program for mRNA and EST sequence , 2005, Bioinform..
[22] R. Guigó,et al. Comparative gene prediction in human and mouse. , 2003, Genome research.