Incorporating uncertainty and prior information into stable isotope mixing models.

Stable isotopes are a powerful tool for ecologists, often used to assess contributions of different sources to a mixture (e.g. prey to a consumer). Mixing models use stable isotope data to estimate the contribution of sources to a mixture. Uncertainty associated with mixing models is often substantial, but has not yet been fully incorporated in models. We developed a Bayesian-mixing model that estimates probability distributions of source contributions to a mixture while explicitly accounting for uncertainty associated with multiple sources, fractionation and isotope signatures. This model also allows for optional incorporation of informative prior information in analyses. We demonstrate our model using a predator-prey case study. Accounting for uncertainty in mixing model inputs can change the variability, magnitude and rank order of estimates of prey (source) contributions to the predator (mixture). Isotope mixing models need to fully account for uncertainty in order to accurately estimate source contributions.

[1]  David Lindley,et al.  Bayesian Statistics 3: Proceedings of the Third Valencia International Meeting. , 1990 .

[2]  David Lindley,et al.  Theory and Practice of Bayesian Statistics , 1983 .

[3]  J. Rasmussen,et al.  Comparison of aquatic food chains using nitrogen isotopes. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[4]  D. Phillips,et al.  Source partitioning using stable isotopes: coping with too many sources , 2003, Oecologia.

[5]  Aaron M. Ellison,et al.  Bayesian inference in ecology , 2004 .

[6]  C. Robert The Bayesian choice : a decision-theoretic motivation , 1996 .

[7]  B. Peterson,et al.  STABLE ISOTOPES IN ECOSYSTEM STUDIES , 1987 .

[8]  G. Polis,et al.  Complex Trophic Interactions in Deserts: An Empirical Critique of Food-Web Theory , 1991, The American Naturalist.

[9]  M K McAllister,et al.  A Bayesian approach to choosing a design for surveying fishery resources: application to the eastern Bering Sea trawl survey , 1997 .

[10]  J. V. Zanden,et al.  Variation in d 15 N and d 13 C trophic fractionation : Implications for aquatic food web studies , 2001 .

[11]  Donald L. Phillips,et al.  Uncertainty in source partitioning using stable isotopes , 2017, Oecologia.

[12]  D. Post,et al.  Getting to the fat of the matter: models, methods and assumptions for dealing with lipids in stable isotope analyses , 2007, Oecologia.

[13]  D. Post USING STABLE ISOTOPES TO ESTIMATE TROPHIC POSITION: MODELS, METHODS, AND ASSUMPTIONS , 2002 .

[14]  B. O. Wolf,et al.  Mass-Balance Models for Animal Isotopic Ecology , 2004 .

[15]  James N. Ianelli,et al.  Bayesian stock assessment using catch-age data and the sampling - importance resampling algorithm , 1997 .

[16]  John K Kruschke,et al.  Bayesian data analysis. , 2010, Wiley interdisciplinary reviews. Cognitive science.

[17]  D. O'Brien,et al.  STABLE ISOTOPES IN ANIMAL ECOLOGY: ASSUMPTIONS, CAVEATS, AND A CALL FOR MORE LABORATORY EXPERIMENTS , 1997 .

[18]  Jacob E. Allgeier,et al.  Niche width collapse in a resilient top predator following ecosystem fragmentation , 2007, Ecology letters.

[19]  Timothy D. Jardine,et al.  Analytical error in stable isotope ecology , 2005, Oecologia.

[20]  S. Macko,et al.  Isotopic turnover in aquatic predators: quantifying the exploitation of migratory prey , 2001 .

[21]  J. March,et al.  Testing isosource: stable isotope analysis of a tropical fishery with diverse organic matter sources. , 2006, Ecology.

[22]  Márcio S. Araújo,et al.  Using δ13C stable isotopes to quantify individual-level diet variation , 2007, Oecologia.

[23]  M. J. Deniro,et al.  Influence of Diet On the Distribtion of Nitrogen Isotopes in Animals , 1978 .

[24]  M. J. V. Zanden,et al.  Comparing trophic position of freshwater fish calculated using stable nitrogen isotope ratios (δ15N) and literature dietary data , 1997 .

[25]  Gabriel J Bowen,et al.  Stable isotopes as one of nature's ecological recorders. , 2006, Trends in ecology & evolution.

[26]  A. Mazumder,et al.  A critical evaluation of intrapopulation variation of δ13C and isotopic evidence of individual specialization , 2004, Oecologia.

[27]  P. Hersteinsson,et al.  Dietary variation in arctic foxes (Alopex lagopus)-an analysis of stable carbon isotopes , 1994, Oecologia.

[28]  D. Rubin Using the SIR algorithm to simulate posterior distributions , 1988 .

[29]  Robert J. Connor,et al.  Concepts of Independence for Proportions with a Generalization of the Dirichlet Distribution , 1969 .

[30]  C. Kendall,et al.  Variation in trophic shift for stable isotope ratios of carbon, nitrogen, and sulfur , 2003 .

[31]  K. Hobson,et al.  Intrapopulation variation in gray wolf isotope (δ15N and δ13C) profiles: implications for the ecology of individuals , 2005, Oecologia.

[32]  Robyn K. Whipp Food Webs at the Landscape Level , 2005 .

[33]  G. Libourel,et al.  Tracing source pollution in soils using cadmium and lead isotopes. , 2006, Environmental science & technology.

[34]  G. Kling,et al.  Stable Isotopes and Planktonic Trophic Structure in Arctic Lakes , 1992 .

[35]  A. Cohen,et al.  Interpreting stable isotopes in food webs: Recognizing the role of time averaging at different trophic levels , 2002 .

[36]  J. Rasmussen,et al.  Variation in δ15N and δ13C trophic fractionation: Implications for aquatic food web studies , 2001 .

[37]  L. Tieszen,et al.  Fractionation and turnover of stable carbon isotopes in animal tissues: Implications for δ13C analysis of diet , 1983, Oecologia.

[38]  Donald L. Phillips,et al.  Combining sources in stable isotope mixing models: alternative methods , 2005, Oecologia.

[39]  M. J. V. Zanden,et al.  PRIMARY CONSUMER δ13C AND δ15N AND THE TROPHIC POSITION OF AQUATIC CONSUMERS , 1999 .

[40]  H. Sarakinos,et al.  A synthesis of tissue-preservation effects on carbon and nitrogen stable isotope signatures , 2002 .

[41]  D. Schindler,et al.  Habitat saturation drives thresholds in stream subsidies. , 2008, Ecology.

[42]  C. Simenstad,et al.  Multi‐source mixing models to quantify food web sources and pathways , 2004 .

[43]  C. Harvey,et al.  Varying effects of anadromous sockeye salmon on the trophic ecology of two species of resident salmonids in southwest Alaska , 2007 .

[44]  J. Newton,et al.  Stable Isotope Ecology , 2010 .

[45]  T. Francis,et al.  Pacific salmon and the ecology of coastal ecosystems , 2003 .

[46]  M. Minagawa,et al.  Stepwise enrichment of 15N along food chains: Further evidence and the relation between δ15N and animal age , 1984 .

[47]  M. Vanderklift,et al.  Sources of variation in consumer-diet δ15N enrichment: a meta-analysis , 2003, Oecologia.