Design and evaluation of Actichip, a thematic microarray for the study of the actin cytoskeleton

[1]  Yi Xing,et al.  Exon arrays provide accurate assessments of gene expression , 2007, Genome Biology.

[2]  Crispin J. Miller,et al.  High correspondence between Affymetrix exon and standard expression arrays. , 2007, BioTechniques.

[3]  Y. Xing,et al.  Probe Selection and Expression Index Computation of Affymetrix Exon Arrays , 2006, PloS one.

[4]  A. Witteveen,et al.  Converting a breast cancer microarray signature into a high-throughput diagnostic test , 2006, BMC Genomics.

[5]  D. Waddington,et al.  Development and validation of a bovine macrophage specific cDNA microarray , 2006, BMC Genomics.

[6]  Daniel J. Park,et al.  A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies , 2006, Nature Biotechnology.

[7]  N. Visa,et al.  Actin in transcription and transcription regulation. , 2006, Current opinion in cell biology.

[8]  Robert Tibshirani,et al.  A simple method for assessing sample sizes in microarray experiments , 2006, BMC Bioinformatics.

[9]  J. Hoheisel.  Microarray technology: beyond transcript profiling and genotype analysis , 2006, Nature Reviews Microbiology.

[10]  Decio L. Eizirik,et al.  Construction and validation of the APOCHIP, a spotted oligo-microarray for the study of beta-cell apoptosis , 2005, BMC Bioinformatics.

[11]  Cathy H. Wu,et al.  The Universal Protein Resource (UniProt): an expanding universe of protein information , 2005, Nucleic Acids Res..

[12]  Olivier Poch,et al.  ICDS database: interrupted CoDing sequences in prokaryotic genomes , 2005, Nucleic Acids Res..

[13]  Olivier Poch,et al.  Sequence and Comparative Genomic Analysis of Actin-related Proteins □ D Sequence Searches and Alignment Sequence Analysis , 2022 .

[14]  J. Segall,et al.  The great escape: when cancer cells hijack the genes for chemotaxis and motility. , 2005, Annual review of cell and developmental biology.

[15]  Grischa Toedt,et al.  Patient-based cross-platform comparison of oligonucleotide microarray expression profiles , 2005, Laboratory Investigation.

[16]  John Quackenbush,et al.  Multiple-laboratory comparison of microarray platforms , 2005, Nature Methods.

[17]  Olivier Poch,et al.  GOAnno: GO annotation based on multiple alignment , 2005, Bioinform..

[18]  K. Rottner,et al.  Actin polymerization machinery: the finish line of signaling networks, the starting point of cellular movement , 2005, Cellular and Molecular Life Sciences CMLS.

[19]  Bryan Frank,et al.  Independence and reproducibility across microarray platforms , 2005, Nature Methods.

[20]  Kathleen F. Kerr,et al.  Standardizing global gene expression analysis between laboratories and across platforms , 2005, Nature Methods.

[21]  Eric K. Nordberg,et al.  YODA: selecting signature oligonucleotides , 2005, Bioinform..

[22]  P. Peyret,et al.  GoArrays : highly dynamic and efficient microarray probe design , 2005 .

[23]  Yves Moreau,et al.  Benchmarking the CATMA Microarray. A Novel Tool forArabidopsis Transcriptome Analysis1[w] , 2005, Plant Physiology.

[24]  Tatiana Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[25]  Tatiana A. Tatusova,et al.  NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins , 2004, Nucleic Acids Res..

[26]  Patrick S. Schnable,et al.  Picky: oligo microarray design for large genomes , 2004, Bioinform..

[27]  Christophe Ampe,et al.  The actin cytoskeleton in normal and pathological cell motility. , 2004, The international journal of biochemistry & cell biology.

[28]  R. Shippy,et al.  Performance evaluation of commercial short-oligonucleotide microarrays and the impact of noise in making cross-platform correlations , 2004, BMC Genomics.

[29]  Zoltan Szallasi,et al.  Increased measurement accuracy for sequence-verified microarray probes. , 2004, Physiological genomics.

[30]  Céline Revenu,et al.  The co-workers of actin filaments: from cell structures to signals , 2004, Nature Reviews Molecular Cell Biology.

[31]  H. Goodson,et al.  Actin and ARPs: action in the nucleus. , 2004, Trends in cell biology.

[32]  Hans Lehrach,et al.  A comparison of oligonucleotide and cDNA-based microarray systems. , 2004, Physiological genomics.

[33]  Laurent Duret,et al.  ROSO: optimizing oligonucleotide probes for microarrays , 2004, Bioinform..

[34]  Thomas Waerner,et al.  Expression profiling of epithelial plasticity in tumor progression , 2003, Oncogene.

[35]  W. E. Orr,et al.  Comparing the use of Affymetrix to spotted oligonucleotide microarrays using two retinal pigment epithelium cell lines. , 2003, Molecular vision.

[36]  R. Lempicki,et al.  Evaluation of gene expression measurements from commercial microarray platforms. , 2003, Nucleic acids research.

[37]  Kristina Hanspers,et al.  Spotted long oligonucleotide arrays for human gene expression analysis. , 2003, Genome research.

[38]  Steen Knudsen,et al.  Design of oligonucleotides for microarrays and perspectives for design of multi-transcriptome arrays , 2003, Nucleic Acids Res..

[39]  M. Zuker,et al.  OligoArray 2.0: design of oligonucleotide probes for DNA microarrays using a thermodynamic approach. , 2003, Nucleic acids research.

[40]  John Quackenbush,et al.  Assessing unmodified 70-mer oligonucleotide probe performance on glass-slide microarrays , 2003, Genome Biology.

[41]  J. Derisi,et al.  Microarray-based detection and genotyping of viral pathogens , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[42]  Ravi Kothapalli,et al.  Microarray results: how accurate are they? , 2002, BMC Bioinformatics.

[43]  Lucila Ohno-Machado,et al.  Analysis of matched mRNA measurements from two different microarray technologies , 2002, Bioinform..

[44]  T. Hudson,et al.  Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. , 2002, Genome research.

[45]  Jason E. Stewart,et al.  Minimum information about a microarray experiment (MIAME)—toward standards for microarray data , 2001, Nature Genetics.

[46]  Gary D. Stormo,et al.  Selection of optimal DNA oligos for gene expression arrays , 2001, Bioinform..

[47]  R. Tibshirani,et al.  Significance analysis of microarrays applied to the ionizing radiation response , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[48]  P. V. van Diest,et al.  Microarray techniques in pathology: tool or toy? , 2000, Molecular pathology : MP.

[49]  Jiasen Lu,et al.  Assessment of the sensitivity and specificity of oligonucleotide (50mer) microarrays. , 2000, Nucleic acids research.

[50]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[51]  J. SantaLucia,et al.  A unified view of polymer, dumbbell, and oligonucleotide DNA nearest-neighbor thermodynamics. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[52]  Thomas L. Madden,et al.  Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. , 1997, Nucleic acids research.

[53]  N. Le Meur,et al.  Gene expression profiling in human cardiovascular disease , 2005, Clinical chemistry and laboratory medicine.

[54]  Carole L Yauk,et al.  Comprehensive comparison of six microarray technologies. , 2004, Nucleic acids research.

[55]  E. Friederich,et al.  The actin cytoskeleton as a therapeutic target: state of the art and future directions. , 2003, Progress in cell cycle research.

[56]  S. Khaitlina.  Functional specificity of actin isoforms. , 2001, International review of cytology.

[57]  International Human Genome Sequencing Consortium.  Initial sequencing and analysis of the human genome , 2001, Nature.

[58]  P. Janmey,et al.  Medical aspects of the actin cytoskeleton. , 1995, Current opinion in cell biology.