Mapping the Emergence of Synthetic Biology

In this paper, we apply an original scientometric analyses to a corpus comprising synthetic biology (SynBio) publications in Thomson Reuters Web of Science to characterize the emergence of this new scientific field. Three results were drawn from this empirical investigation. First, despite the exponential growth of publications, the study of population level statistics (newcomers proportion, collaboration network structure) shows that SynBio has entered a stabilization process since 2010. Second, the mapping of textual and citational networks shows that SynBio is characterized by high heterogeneity and four different approaches: the central approach, where biobrick engineering is the most widespread; genome engineering; protocell creation; and metabolic engineering. We suggest that synthetic biology acts as an umbrella term allowing for the mobilization of resources, and also serves to relate scientific content and promises of applications. Third, we observed a strong intertwinement between epistemic and socio-economic dynamics. Measuring scientific production and impact and using structural analysis data, we identified a core set of mostly American scientists. Biographical analysis shows that these central and influential scientists act as “boundary spanners,” meaning that their importance to the field lies not only in their academic contributions, but also in their capacity to interact with other social spaces that are outside the academic sphere.

[1]  Thomas H Segall-Shapiro,et al.  Creation of a Bacterial Cell Controlled by a Chemically Synthesized Genome , 2010, Science.

[2]  D. Bartel,et al.  Synthesizing life , 2001, Nature.

[3]  David J. Weir,et al.  Co-occurrence Retrieval: A Flexible Framework for Lexical Distributional Similarity , 2005, CL.

[4]  A. Paul,et al.  Chemical Synthesis of Poliovirus cDNA: Generation of Infectious Virus in the Absence of Natural Template , 2002, Science.

[5]  P. Bearman,et al.  Lexical shifts, substantive changes, and continuity in State of the Union discourse, 1790–2014 , 2015, Proceedings of the National Academy of Sciences.

[6]  Andrei Mogoutov,et al.  Data search strategy for science and technology emergence: A scalable and evolutionary query for nanotechnology tracking , 2007 .

[7]  Matthias Heinemann,et al.  Synthetic biology - putting engineering into biology , 2006, Bioinform..

[8]  J. Liao,et al.  Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels , 2008, Nature.

[9]  Timothy B. Stockwell,et al.  Complete Chemical Synthesis, Assembly, and Cloning of a Mycoplasma genitalium Genome , 2008, Science.

[10]  P. Oldham,et al.  Synthetic Biology: Mapping the Scientific Landscape , 2012, PloS one.

[11]  Paula E. Stephan,et al.  A multidimensional view of industrial and academic science , 2011 .

[12]  Ronald Rousseau,et al.  From a word to a world: the current situation in the interdisciplinary field of synthetic biology , 2015, PeerJ.

[13]  Gregory Stephanopoulos,et al.  Synthetic biology and metabolic engineering. , 2012, ACS synthetic biology.

[14]  D. Crane SOCIAL STRUCTURE IN A GROUP OF SCIENTISTS: A TEST OF THE “INVISIBLE COLLEGE” HYPOTHESIS* , 1977 .

[15]  Clark A. Miller,et al.  Capturing the imaginary : Vanguards, visions and the synthetic biology revolution Stephen Hilgartner , 2015 .

[16]  T. Gieryn Boundary-work and the demarcation of science from non-science: Strains and interests in professional , 1983 .

[17]  Henry G. Small,et al.  Co-citation in the scientific literature: A new measure of the relationship between two documents , 1973, J. Am. Soc. Inf. Sci..

[18]  J. Keasling,et al.  Engineering a mevalonate pathway in Escherichia coli for production of terpenoids , 2003, Nature Biotechnology.

[19]  G. Joseph,et al.  Breast Cancer Gene Research and Medical Practices : Transnational Perspectives in the Time of BRCA , 2014 .

[20]  D. Endy Foundations for engineering biology , 2005, Nature.

[21]  George M. Church,et al.  Regenesis: How Synthetic Biology Will Reinvent Nature and Ourselves , 2012 .

[22]  Bernadette Bensaude Vincent,et al.  Discipline-building in synthetic biology. , 2013, Studies in history and philosophy of biological and biomedical sciences.

[23]  S. Frickel,et al.  A General Theory of Scientific/Intellectual Movements , 2005 .

[24]  Timothy S. Ham,et al.  Production of the antimalarial drug precursor artemisinic acid in engineered yeast , 2006, Nature.

[25]  C. A. Hutchinson,et al.  Genome transplantation in bacteria: changing one species to another. , 2007, Nature Reviews Microbiology.

[26]  Keith E. J. Tyo,et al.  Isoprenoid Pathway Optimization for Taxol Precursor Overproduction in Escherichia coli , 2010, Science.

[27]  J Craig Venter,et al.  Generating a synthetic genome by whole genome assembly: φX174 bacteriophage from synthetic oligonucleotides , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[28]  T. Kuhn,et al.  The Structure of Scientific Revolutions. , 1964 .

[29]  C. Hutchison,et al.  Essential genes of a minimal bacterium. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[30]  D. Bartel,et al.  Synthesizing life : Paths to unforeseeable science & technology , 2001 .

[31]  E. Andrianantoandro,et al.  Synthetic biology: new engineering rules for an emerging discipline , 2006, Molecular systems biology.

[32]  Christopher A. Voigt,et al.  Automated design of synthetic ribosome binding sites to control protein expression , 2016 .

[33]  Arie Rip,et al.  Umbrella terms as a conduit in the governance of emerging science and technology , 2013 .

[34]  Alan L. Porter,et al.  Science overlay maps: A new tool for research policy and library management , 2009, J. Assoc. Inf. Sci. Technol..

[35]  G. Church,et al.  Accurate multiplex gene synthesis from programmable DNA microchips , 2004, Nature.

[36]  Maureen A. O’Malley,et al.  Knowledge-making distinctions in synthetic biology. , 2008, BioEssays : news and reviews in molecular, cellular and developmental biology.

[37]  J. Keasling,et al.  Microbial engineering for the production of advanced biofuels , 2012, Nature.

[38]  Luis Campos,et al.  That Was the Synthetic Biology That Was , 2009 .

[39]  Vincent D. Blondel,et al.  Automatic Discovery of SimilarWords , 2008 .

[40]  Pasquale Stano,et al.  Approaches to semi-synthetic minimal cells: a review , 2005, Naturwissenschaften.

[41]  N. Mullins The development of a scientific specialty: The phage group and the origins of molecular biology , 1972 .

[42]  Koji Kawabata,et al.  Complete Chemical Synthesis , Assembly , and Cloning of a Mycoplasma genitalium Genome , 2008 .

[43]  Michael W. Berry,et al.  Survey of Text Mining II , 2008 .

[44]  G. Stephanopoulos,et al.  Tuning genetic control through promoter engineering. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[45]  J. Keasling,et al.  Integrating Biological Redesign: Where Synthetic Biology Came From and Where It Needs to Go , 2014, Cell.

[46]  F. Blattner,et al.  Emergent Properties of Reduced-Genome Escherichia coli , 2006, Science.

[47]  L. Bettencourt,et al.  Evolution and structure of sustainability science , 2011, Proceedings of the National Academy of Sciences.

[48]  Morgan Meyer,et al.  Tales of Emergence—Synthetic Biology as a Scientific Community in the Making , 2009 .

[49]  J. Collins,et al.  Construction of a genetic toggle switch in Escherichia coli , 2000, Nature.

[50]  L. Zucker,et al.  Movement of Star Scientists and Engineers and High-Tech Firm Entry , 2006 .

[51]  M. Elowitz,et al.  A synthetic oscillatory network of transcriptional regulators , 2000, Nature.