Chapter 3 Microbiology of the composting process

Publisher Summary This chapter discusses the microbiology of the composting process. The biological cycling of nutrients is indispensable for life and is mediated through microorganisms. Biotransformation is a biological modification that alters the chemical structure of a substance. The decay of materials during composting follows the common biochemical pathways of any other degradation process. Generally, plant materials make up the highest amounts, while animal tissues or microbial components are only minor fractions of any mixture, but usually are the most nutrient-rich fractions. The degradation of organic compounds under natural conditions usually occurs in soils and sediments, on the soil surface, or in water bodies. In most cases, the decomposing substrates have physical contact with the degraded material or with an external matrix. Continuous composting processes may be regarded as a sequence of continuous cultures, each of them with their own physical, chemical, and biological properties and feedback effects. All of the microbial transformations of nitrogen occurring in nature also take place during composting, even if with different significance.

[1]  W. Meijer,et al.  Use of Molecular Probing to Assess Microbial Activities in Natural Ecosystems , 1997 .

[2]  M. Aragno,et al.  Thermophilic bacterial communities in hot composts as revealed by most probable number counts and molecular (16S rDNA) methods , 1999 .

[3]  Heribert Insam,et al.  Can Community Level Physiological Profiles Be Used For Compost Maturity Testing? , 2001 .

[4]  S. Waksman.  Principles of Soil Microbiology , 1928, Nature.

[5]  E. Leadbetter,et al.  Bacteria in Nature , 1989, Bacteria in Nature.

[6]  D A Stahl,et al.  Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology , 1997, Applied and environmental microbiology.

[7]  E. L. Schmidt,et al.  A survey of heterotrophic micro-organisms from soil for ability to form nitrite and nitrate. , 1959, Journal of general microbiology.

[8]  E. Stentiford,et al.  Oxygen and CO2 Profiles and Methane Formation During the Maturation Phase of Composting , 2006 .

[9]  H. Insam,et al.  Soil microbial biomass and respiration measurements: An automated technique based on infra-red gas analysis , 1989, Plant and Soil.

[10]  J. Fischer,et al.  Isolation of Thermus strains from hot composts (60 to 80 degrees C) , 1996, Applied and environmental microbiology.

[11]  H. Insam,et al.  Changes in functional abilities of the microbial community during composting of manure , 2004, Microbial Ecology.

[12]  M. Bertoldi,et al.  The Biology of Composting: a Review , 1983 .

[13]  M. Aragno,et al.  Rapid identification of heterotrophic, thermophilic, spore-forming bacteria isolated from hot composts. , 1997, International journal of systematic bacteriology.

[14]  Dirk De Clercq,et al.  A survey of bacteria and fungi occurring during composting and self-heating processes , 2003 .

[15]  H. Insam,et al.  Microbial Community Dynamics During Composting of Organic Matter as Determined by 16S Ribosomal DNA Analysis , 2002 .

[16]  B. Seekins.  Field test for compost maturity , 1996 .

[17]  V. Torsvik.  Isolation of bacterial DNA from soil. , 1980 .

[18]  P. Monciardini,et al.  Isolation and Characterization of Thermophilic Microorganisms Able to Grow on Cellulose Acetate , 2002 .

[19]  M. Alexander.  Introduction to Soil Microbiology , 1978 .

[20]  M. J. Park,et al.  Symbiobacterium thermophilum gen. nov., sp. nov., a symbiotic thermophile that depends on co-culture with a Bacillus strain for growth. , 2000, International journal of systematic and evolutionary microbiology.

[21]  D. Bourne,et al.  Molecular methods for the study of methanotroph ecology , 1998 .

[22]  Heribert Insam,et al.  Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. , 2005, Journal of microbiological methods.

[23]  V. Torsvik,et al.  High diversity in DNA of soil bacteria , 1990, Applied and environmental microbiology.

[24]  H. Isermeyer.  Eine einfache Methode zur Bestimmung der Bodenatmung und der Karbonate im Boden , 1952 .

[25]  V. Bess.  Evaluating microbiology of compost , 1999 .

[26]  M. Alexander,et al.  FORMATION OF NITRITE AND NITRATE BY ACTINOMYCETES AND FUNGI , 1961, Journal of bacteriology.

[27]  C. A. Browne,et al.  THE SPONTANEOUS HEATING AND IGNITION OF HAY AND OTHER AGRICULTURAL PRODUCTS. , 1933, Science.

[28]  Heribert Insam,et al.  Microbiology of Composting , 2002, Springer Berlin Heidelberg.

[29]  A. Chang,et al.  Nitrification and denitrification processes related to waste water treatment. , 1975, Advances in applied microbiology.

[30]  T. S. Hora,et al.  Nitrification by soil fungi , 2004, Archiv für Mikrobiologie.

[31]  T. Marsh,et al.  Bacterial Community Structure During Yard Trimmings Composting , 2002 .

[32]  F. C. Miller,et al.  Composting as a process based on the control of ecologically selective factors. , 1992 .

[33]  D. Griffin.  A Comparison of the Roles of Bacteria and Fungi , 1985 .

[34]  C. Tebbe,et al.  Succession of Microbial Communities during Hot Composting as Detected by PCR–Single-Strand-Conformation Polymorphism-Based Genetic Profiles of Small-Subunit rRNA Genes , 2000, Applied and Environmental Microbiology.

[35]  M. S. Finstein,et al.  Microbiology of municipal solid waste composting. , 1975, Advances in applied microbiology.

[36]  P F Strom,et al.  Effect of temperature on bacterial species diversity in thermophilic solid-waste composting , 1985, Applied and environmental microbiology.

[37]  S. Kang,et al.  Survey of Fungal Diversity in Mushroom Compost Using Sequences of PCR-Amplified Genes Encoding 18S Ribosomal RNA , 2002 .

[38]  A. Ogram.  Soil molecular microbial ecology at age 20: methodological challenges for the future , 2000 .

[39]  Jean S. VanderGheynst,et al.  The effect of microbial inoculation and pH on microbial community structure changes during composting , 2000 .

[40]  George A. Kowalchuk,et al.  Molecular Analysis of Ammonia-Oxidizing Bacteria of the β Subdivision of the Class Proteobacteria in Compost and Composted Materials , 1999, Applied and Environmental Microbiology.

[41]  J. Miner.  Agricultural Waste Management , 1974 .

[42]  E. Stackebrandt,et al.  Proposal for a New Hierarchic Classification System, Actinobacteria classis nov. , 1997 .