Molecular dimensions of dried glucose oxidase on a Au(111) surface studied by dynamic mode scanning force microscopy

Abstract We have investigated the molecular dimensions of a dried single glucose oxidase (GO) molecule adsorbed on a Au(1 1 1) surface with the UHV non-contact atomic force microscopy (NC-AFM) and tapping mode atomic force microcopy (TMAFM). The smallest air-dried GO particles in a TMAFM-measured size distribution are found to be 10–11 nm wide and 0.3–0.4 nm high. We find each collapsed ellipsoidal feature with a groove in a NC-AFM image, which measured 12 nm × 10 nm × 0.5 nm. The lateral dimensions (12 nm × 10 nm) of the observed feature is close to those of a GO monomer measured by scanning tunneling microscopy (STM) [Quijin et al., 12.2 nm × 8.9 nm as the size of one wing of an opening butterfly (dimer) appeared in a STM image] and by contact mode AFM [Quinto et al., 14 nm × 8 nm]. Our value of the vertical dimension (0.5 nm) is consistent with AFM results and molecular dynamics simulations that suggest a surface-induced complete unfolding, showing the average diameter of amino acid residues.

[1]  K. Koga,et al.  Effect of periodate oxidation on the structure and properties of glucose oxidase. , 1976, Biochimica et biophysica acta.

[2]  S. Rice,et al.  Protein folding at the air-water interface studied with x-ray reflectivity. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[3]  E. Wang,et al.  Direct observation of native and unfolded glucose oxidase structures by scanning tunnelling microscopy , 1994 .

[4]  D Schomburg,et al.  Crystal structure of glucose oxidase from Aspergillus niger refined at 2.3 A resolution. , 1993, Journal of molecular biology.

[5]  Joseph Wang,et al.  Scanning tunneling microscopy of polypyrrole glucose oxidase electrodes , 1991 .

[6]  M. C. Feiters,et al.  Scanning tunnelling microscopy study of polypyrrole films and of glucose oxidase as used in a third-generation biosensor , 1992 .

[7]  C. Lowe,et al.  AFM Studies of Protein Adsorption , 1994 .

[8]  J. Valleton,et al.  Characterization of Enzymic Structures in Mixed Langmuir-Blodgett Films by Scanning Force Microscopy , 1995 .

[9]  I. Otsuka,et al.  Spontaneous Formation of Air Nanobubbles on Hydrocarbons Deposited on the Au(111)/Water Interface , 2003 .

[10]  A. Turner,et al.  Glucose oxidase: an ideal enzyme , 1992 .

[11]  M. Davies,et al.  EFFECT OF CONTROLLED HYDRATION ON SCANNING TUNNELING MICROSCOPY IMAGES OF COVALENTLY IMMOBILIZED PROTEINS , 1995 .

[12]  J. Raba,et al.  Glucose Oxidase as an Analytical Reagent , 1995 .

[13]  A. Bard,et al.  Imaging of biological macromolecules on mica in humid air by scanning electrochemical microscopy. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[14]  J. Valleton,et al.  Molecular resolution images of enzyme-containing Langmuir-Blodgett films , 1992 .

[15]  Fabio Ganazzoli,et al.  Molecular dynamics simulation of the adsorption of a fibronectin module on a graphite surface. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[16]  R. Kataoka,et al.  Tapping mode AFM study on the surface dynamics of a single glucose oxidase molecule on a Au(1 1 1) surface in water with implication for a surface-induced unfolding pathway , 2004 .

[17]  P. Zambonin,et al.  A molecular resolution AFM study of gold-adsorbed glucose oxidase as influenced by enzyme concentration , 1998 .

[18]  M. Dantus,et al.  Imaging the Molecular Dimensions and Oligomerization of Proteins at Liquid/Solid Interfaces , 1998 .

[19]  Fabio Ganazzoli,et al.  Simulation study of the interaction of some albumin subdomains with a flat graphite surface , 2003 .

[20]  S. Magdassi,et al.  Transmission Electron Microscopy at Cryogenic Temperatures and Dynamic Light Scattering Studies of Glucose Oxidase Molecules and Self-Aggregated Nanoparticles , 2002 .

[21]  David E. Williams,et al.  Adsorption of Glucose Oxidase at Organic−Aqueous and Air−Aqueous Interfaces , 2003 .

[22]  M. N. Jones,et al.  The dissociation of glucose oxidase by sodium n-dodecyl sulphate. , 1982, The Biochemical journal.

[23]  I. Otsuka,et al.  Surface topography of epitaxial Au(111) films deposited on MoS2 , 1995 .

[24]  Timothy F. Havel,et al.  NMR structure determination in solution: a critique and comparison with X-ray crystallography. , 1992, Annual review of biophysics and biomolecular structure.

[25]  C. Siedlecki,et al.  Time-dependent conformational changes in fibrinogen measured by atomic force microscopy. , 2004, Langmuir : the ACS journal of surfaces and colloids.

[26]  J. Bockris,et al.  On the Adsorption of Glucose Oxidase at a Gold Electrode , 1989 .

[27]  M. Billeter,et al.  Comparison of protein structures determined by NMR in solution and by X-ray diffraction in single crystals , 1992, Quarterly Reviews of Biophysics.

[28]  D. Hornby,et al.  Imaging ROMK1 inwardly rectifying ATP-sensitive K+ channel protein using atomic force microscopy. , 1996, Proceedings of the National Academy of Sciences of the United States of America.