Differential utility of the Bacteroidales DNA and RNA markers in the tiered approach for microbial source tracking in subtropical seawater

[1]  P. Gyawali,et al.  Relative inactivation of faecal indicator bacteria and sewage markers in freshwater and seawater microcosms , 2014, Letters in applied microbiology.

[2]  M. Firestone,et al.  Evaluating rRNA as an indicator of microbial activity in environmental communities: limitations and uses , 2013, The ISME Journal.

[3]  Orin C. Shanks,et al.  Differential Decay of Enterococci and Escherichia coli Originating from Two Fecal Pollution Sources , 2013, Applied and Environmental Microbiology.

[4]  V. Harwood,et al.  Association of Fecal Indicator Bacteria with Human Viruses and Microbial Source Tracking Markers at Coastal Beaches Impacted by Nonpoint Source Pollution , 2012, Applied and Environmental Microbiology.

[5]  C. Yost,et al.  Persistence of host-associated Bacteroidales gene markers and their quantitative detection in an urban and agricultural mixed prairie watershed. , 2012, Water research.

[6]  G. Gruau,et al.  Relative decay of fecal indicator bacteria and human-associated markers: a microcosm study simulating wastewater input into seawater and freshwater. , 2012, Environmental science & technology.

[7]  Lauren M. Sassoubre,et al.  Occurrence and Persistence of Bacterial Pathogens and Indicator Organisms in Beach Sand along the California Coast , 2012, Applied and Environmental Microbiology.

[8]  Zhenli He,et al.  High diversity and differential persistence of fecal Bacteroidales population spiked into freshwater microcosm. , 2012, Water research.

[9]  Rulong Liu,et al.  Improving the performance of an end-point PCR assay commonly used for the detection of Bacteroidales pertaining to cow feces , 2012, Applied Microbiology and Biotechnology.

[10]  S. Wuertz,et al.  Survival of Host-Associated Bacteroidales Cells and Their Relationship with Enterococcus spp., Campylobacter jejuni, Salmonella enterica Serovar Typhimurium, and Adenovirus in Freshwater Microcosms as Measured by Propidium Monoazide-Quantitative PCR , 2011, Applied and Environmental Microbiology.

[11]  Orin C. Shanks,et al.  Differential decay of human faecal Bacteroides in marine and freshwater. , 2011, Environmental microbiology.

[12]  R. Marti,et al.  Effect of oxygen and temperature on the dynamic of the dominant bacterial populations of pig manure and on the persistence of pig‐associated genetic markers, assessed in river water microcosms , 2011, Journal of applied microbiology.

[13]  L. Fu,et al.  Differentiation of Fecal Escherichia coli from Human, Livestock, and Poultry Sources by rep-PCR DNA Fingerprinting on the Shellfish Culture Area of East China Sea , 2011, Current Microbiology.

[14]  Valerie J. Harwood,et al.  Microbial source tracking : methods, applications, and case studies , 2011 .

[15]  O. Soleckia,et al.  Persistence of microbial and chemical pig manure markers as compared to faecal indicator bacteria survival in freshwater and seawater microcosms , 2011 .

[16]  P. Qian,et al.  Host-specific 16S rRNA gene markers of Bacteroidales for source tracking of fecal pollution in the subtropical coastal seawater of Hong Kong. , 2010, Water research.

[17]  D. Anderson,et al.  A comparison of eutrophication impacts in two harbours in Hong Kong with different hydrodynamics , 2010 .

[18]  Timothy Bartrand,et al.  Estimated human health risks from exposure to recreational waters impacted by human and non-human sources of faecal contamination. , 2010, Water research.

[19]  S. Markand,et al.  Assessment of non-point sources of fecal pollution in coastal waters of Puerto Rico and Trinidad. , 2010, Marine pollution bulletin.

[20]  Linda K. Dick,et al.  Relative Decay of Bacteroidales Microbial Source Tracking Markers and Cultivated Escherichia coli in Freshwater Microcosms , 2010, Applied and Environmental Microbiology.

[21]  Hee-Deung Park,et al.  Quantitative analysis of human and cow-specific 16S rRNA gene markers for assessment of fecal pollution in river waters by real-time PCR. , 2010, Journal of microbiology and biotechnology.

[22]  Mano Sivaganesan,et al.  Performance Assessment PCR-Based Assays Targeting Bacteroidales Genetic Markers of Bovine Fecal Pollution , 2010, Applied and Environmental Microbiology.

[23]  S. Wuertz,et al.  Rapid decay of host-specific fecal Bacteroidales cells in seawater as measured by quantitative PCR with propidium monoazide. , 2009, Water research.

[24]  K. Field,et al.  Survival and persistence of human and ruminant-specific faecal Bacteroidales in freshwater microcosms. , 2009, Environmental microbiology.

[25]  T. Bekel,et al.  Construction of an adult barnacle (Balanus amphitrite) cDNA library and selection of reference genes for quantitative RT-PCR studies , 2009, BMC Molecular Biology.

[26]  Carlos M. Duarte,et al.  Thresholds of hypoxia for marine biodiversity , 2008, Proceedings of the National Academy of Sciences.

[27]  A. Goonetilleke,et al.  Detection and source identification of faecal pollution in non-sewered catchment by means of host-specific molecular markers. , 2008, Water science and technology : a journal of the International Association on Water Pollution Research.

[28]  Xing-Fang Li,et al.  Detection of Viable but Nonculturable Escherichia coli O157:H7 Bacteria in Drinking Water and River Water , 2008, Applied and Environmental Microbiology.

[29]  Stefan Wuertz,et al.  Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. , 2007, Water research.

[30]  W. Meijer,et al.  Validation of host-specific Bacteriodales 16S rRNA genes as markers to determine the origin of faecal pollution in Atlantic Rim countries of the European Union. , 2007, Water research.

[31]  S. Okabe,et al.  Persistence of host-specific Bacteroides–Prevotella 16S rRNA genetic markers in environmental waters: effects of temperature and salinity , 2007, Applied Microbiology and Biotechnology.

[32]  Daniel E. Williams,et al.  Development of Bacteroides 16S rRNA Gene TaqMan-Based Real-Time PCR Assays for Estimation of Total, Human, and Bovine Fecal Pollution in Water , 2006, Applied and Environmental Microbiology.

[33]  Satoshi Okabe,et al.  Application of a direct fluorescence-based live/dead staining combined with fluorescence in situ hybridization for assessment of survival rate of Bacteroides spp. in drinking water. , 2005, Biotechnology and bioengineering.

[34]  M. Deutscher,et al.  Elevation of RNase R in Response to Multiple Stress Conditions* , 2005, Journal of Biological Chemistry.

[35]  R. Reed,et al.  Oxygen and photoinactivation of Escherichia coli in UVA and sunlight , 2005, Journal of applied microbiology.

[36]  A H Geeraerd,et al.  GInaFiT, a freeware tool to assess non-log-linear microbial survivor curves. , 2005, International journal of food microbiology.

[37]  A. A. Mohamed Hatha,et al.  Relative survival of Escherichia coli and Salmonella typhimurium in a tropical estuary. , 2005, Water research.

[38]  L. Sinton Biotic and Abiotic Effects , 2005 .

[39]  Kedong Yin,et al.  Temporal and Spatial Distribution of Dissolved Oxygen in the Pearl River Estuary and Adjacent Coastal Waters , 2004 .

[40]  Sébastien Flavier,et al.  Establishment of a Real-Time PCR-Based Approach for Accurate Quantification of Bacterial RNA Targets in Water, Using Salmonella as a Model Organism , 2004, Applied and Environmental Microbiology.

[41]  S. Parry,et al.  SUSPENDED SEDIMENT IN HONG KONG WATERS GEO REPORT No . 106 S , 2003 .

[42]  A. Bordalo,et al.  Survival of faecal indicator bacteria in tropical estuarine waters (Bangpakong River, Thailand) , 2002, Journal of applied microbiology.

[43]  S. Belkin,et al.  Survival of enteric bacteria in seawater. , 2001, FEMS microbiology reviews.

[44]  Katharine G. Field,et al.  A PCR Assay To Discriminate Human and Ruminant Feces on the Basis of Host Differences in Bacteroides-Prevotella Genes Encoding 16S rRNA , 2000, Applied and Environmental Microbiology.

[45]  Kunitomo Watanabe,et al.  Induction of oxidative DNA damage in anaerobes , 1999, FEBS letters.

[46]  T. Tam,et al.  Enumeration of E. coli in environmental waters and wastewater using a chromogenic medium , 1997 .

[47]  Dunne Rp,et al.  Penetration of solar UVB radiation in shallow tropical waters and its potential biological effects on coral reefs; results from the central Indian Ocean and Andaman Sea , 1996 .

[48]  K. Schleifer,et al.  Phylogenetic identification and in situ detection of individual microbial cells without cultivation. , 1995, Microbiological reviews.

[49]  R. Tyson,et al.  Modern and ancient continental shelf anoxia: an overview , 1991, Geological Society, London, Special Publications.

[50]  W. Cheung,et al.  Health effects of beach water pollution in Hong Kong , 1990, Epidemiology and Infection.

[51]  R. Fujioka,et al.  Effect of sunlight on survival of indicator bacteria in seawater , 1981, Applied and environmental microbiology.