Coral reefs in the Anthropocene

[1]  S. Levin,et al.  The right incentives enable ocean sustainability successes and provide hope for the future , 2016, Proceedings of the National Academy of Sciences.

[2]  R. Grigg,et al.  Holocene coral reef accretion in Hawaii: a function of wave exposure and sea level history , 1998, Coral Reefs.

[3]  G. Daily,et al.  Biodiversity loss and its impact on humanity , 2012, Nature.

[4]  C. Mora.  Ecology of fishes on coral reefs , 2015 .

[5]  Joeri Rogelj,et al.  Global warming under old and new scenarios using IPCC climate sensitivity range estimates , 2012 .

[6]  N. Owen‐Smith.  Spatial ecology of large herbivore populations , 2014 .

[7]  D. Victor,et al.  The Regime Complex for Climate Change , 2010, Perspectives on Politics.

[8]  J. Hoffman.  Q&A: Sylvia Earle on protecting our seas , 2010, Nature.

[9]  S. Palumbi,et al.  Mechanisms of reef coral resistance to future climate change , 2014, Science.

[10]  D. Bellwood,et al.  Human activity selectively impacts the ecosystem roles of parrotfishes on coral reefs , 2012, Proceedings of the Royal Society B: Biological Sciences.

[11]  David Mouillot,et al.  Functional over-redundancy and high functional vulnerability in global fish faunas on tropical reefs , 2014, Proceedings of the National Academy of Sciences.

[12]  N. Knowlton,et al.  Marine Ecosystem-based Management in Practice: Scientific and Governance Challenges , 2008 .

[13]  S. Palumbi,et al.  Multilocus Adaptation Associated with Heat Resistance in Reef-Building Corals , 2014, Current Biology.

[14]  Joshua S Madin,et al.  A Trait-Based Approach to Advance Coral Reef Science. , 2016, Trends in ecology & evolution.

[15]  D. Bellwood,et al.  Confronting the coral reef crisis , 2004, Nature.

[16]  M. Matz,et al.  Gene expression plasticity as a mechanism of coral adaptation to a variable environment , 2016, Nature Ecology &Evolution.

[17]  Scott F. Heron,et al.  Climate change disables coral bleaching protection on the Great Barrier Reef , 2016, Science.

[18]  M. MacNeil,et al.  Predicting climate-driven regime shifts versus rebound potential in coral reefs , 2015, Nature.

[19]  B. Collette,et al.  Reef Fishes Over Sponge Bottoms Off the Mouth of the Amazon River , 1977 .

[20]  E. Mohammadi,et al.  Barriers and facilitators related to the implementation of a physiological track and trigger system: A systematic review of the qualitative evidence , 2017, International journal for quality in health care : journal of the International Society for Quality in Health Care.

[21]  M. Spalding,et al.  Reefs at Risk Revisited , 2011 .

[22]  K. Arrow,et al.  Social norms as solutions , 2016, Science.

[23]  D. Bosence.  Coralline algal reef frameworks , 1983, Journal of the Geological Society.

[24]  J. Lough.  Small change, big difference: Sea surface temperature distributions for tropical coral reef ecosystems, 1950–2011 , 2012 .

[25]  R. Cunning,et al.  Change in algal symbiont communities after bleaching, not prior heat exposure, increases heat tolerance of reef corals , 2015, Global change biology.

[26]  P. Mumby,et al.  Multiple Stressors and the Functioning of Coral Reefs. , 2017, Annual review of marine science.

[27]  E. Maier‐Reimer,et al.  Anthropogenic ocean acidification over the twenty-first century and its impact on calcifying organisms , 2005, Nature.

[28]  M. Figueiredo,et al.  Colonization and growth of crustose coralline algae (Corallinales, Rhodophyta) on the Rocas Atoll , 2005 .

[29]  Patrick Christie,et al.  Improving human and environmental conditions through the Coral Triangle Initiative: progress and challenges , 2016 .

[30]  S. Purkis,et al.  Spatial analysis of the invasion of lionfish in the western Atlantic and Caribbean. , 2011, Marine pollution bulletin.

[31]  Romina Martin,et al.  Combining system dynamics and agent-based modeling to analyze social-ecological interactions—an example from modeling restoration of a shallow lake , 2015, Front. Environ. Sci..

[32]  Robert O. Keohane,et al.  The Global Politics of Climate Change: Challenge for Political Science , 2014, PS: Political Science & Politics.

[33]  J. Rogelj,et al.  Paris Agreement climate proposals need a boost to keep warming well below 2 °C , 2016, Nature.

[34]  F. Chapin,et al.  A safe operating space for humanity , 2009, Nature.

[35]  A. Arias.  Understanding and managing compliance in the nature conservation context. , 2015, Journal of environmental management.

[36]  R. Steneck,et al.  Rising to the challenge of sustaining coral reef resilience. , 2010, Trends in ecology & evolution.

[37]  R. Plowright,et al.  Causal inference in disease ecology: investigating ecological drivers of disease emergence , 2008 .

[38]  S. Fredericq,et al.  Eukaryotic Life Inhabits Rhodolith-forming Coralline Algae (Hapalidiales, Rhodophyta), Remarkable Marine Benthic Microhabitats , 2017, Scientific Reports.

[39]  L. Rocha.  Patterns of distribution and processes of speciation in Brazilian reef fishes , 2003 .

[40]  Rebecca A O'Leary,et al.  Growth of Western Australian Corals in the Anthropocene , 2012, Science.

[41]  D. Bellwood,et al.  New paradigms for supporting the resilience of marine ecosystems. , 2005, Trends in ecology & evolution.

[42]  P. Ehrlich,et al.  Intervention Ecology: Applying Ecological Science in the Twenty-first Century , 2011 .

[43]  Corinne Le Quéré,et al.  Climate Change 2013: The Physical Science Basis , 2013 .

[44]  John M. Pandolfi,et al.  Incorporating Uncertainty in Predicting the Future Response of Coral Reefs to Climate Change , 2015 .

[45]  P. Bongaerts,et al.  Marine Ecology , 2011 .

[46]  K. Brown,et al.  Resilience, Development and Global Change , 2015 .

[47]  R. Gates,et al.  Ocean acidification influences host DNA methylation and phenotypic plasticity in environmentally susceptible corals , 2016, Evolutionary applications.

[48]  K. Bjorndal,et al.  Global Trajectories of the Long-Term Decline of Coral Reef Ecosystems , 2003, Science.

[49]  Kenneth W. Abbott,et al.  Navigating the Anthropocene: Improving Earth System Governance , 2012, Science.

[50]  K. Arrow,et al.  Social-ecological systems as complex adaptive systems: modeling and policy implications , 2012, Environment and Development Economics.

[51]  Peter J Mumby,et al.  The influence of resilience-based management on coral reef monitoring: A systematic review , 2017, PloS one.

[52]  Daniel H. Cole,et al.  Advantages of a polycentric approach to climate change policy , 2015 .

[53]  Ivar Kolstad.  The evolution of social norms , 2003 .

[54]  Hugh Sweatman,et al.  Adaptive management of the Great Barrier Reef: A globally significant demonstration of the benefits of networks of marine reserves , 2010, Proceedings of the National Academy of Sciences.

[55]  Vivian Y Y Lam,et al.  Status and trends of Caribbean coral reefs : 1970-2012 , 2014 .

[56]  Ralf Seppelt,et al.  Advancing sustainability through mainstreaming a social–ecological systems perspective , 2015 .

[57]  Masson-Delmotte,et al.  The Physical Science Basis , 2007 .

[58]  Hahn Chul Jung,et al.  Social-ecological feedbacks lead to unsustainable lock-in in an inland fishery , 2016 .

[59]  Elizabeth C. Kent,et al.  Global analyses of sea surface temperature, sea ice, and night marine air temperature since the late nineteenth century , 2003 .

[60]  Owen L. Petchey,et al.  Biodiversity and Resilience of Ecosystem Functions. , 2015, Trends in ecology & evolution.

[61]  Will F. Figueira,et al.  Global warming and recurrent mass bleaching of corals , 2017, Nature.

[62]  R. Grosberg,et al.  Climate Change, Human Impacts, and the Resilience of Coral Reefs , 2003, Science.

[63]  S. Naeem,et al.  The Functions of Biological Diversity in an Age of Extinction , 2012, Science.

[64]  David Satterthwaite,et al.  Cross-chapter box on heat stress and heat waves : Climate change 2014: impacts, adaptation, and vulnerability. Part A: Global and sectoral aspects. Contribution of Working Group II to the Fifth Assessment Report of the Intergovernmental Panel on Climate Change , 2014 .

[65]  J. Pandolfi,et al.  Projecting Coral Reef Futures Under Global Warming and Ocean Acidification , 2011, Science.

[66]  A. E. Johnson,et al.  Reducing bycatch in coral reef trap fisheries: escape gaps as a step towards sustainability , 2010 .

[67]  Eckart Ehlers,et al.  Earth system science in the Anthropocene , 2006 .

[68]  E. Ostrom.  Polycentric systems for coping with collective action and global environmental change , 2010 .

[69]  S. Carpenter,et al.  Creating a safe operating space for iconic ecosystems , 2015, Science.

[70]  R. Coutinho,et al.  Deep-water rhodolith productivity and growth in the southwestern Atlantic , 2012, Journal of Applied Phycology.

[71]  J. Gregory,et al.  Land/sea warming ratio in response to climate change: IPCC AR4 model results and comparison with observations , 2007 .

[72]  D. Bellwood,et al.  Managing resilience to reverse phase shifts in coral reefs , 2013 .

[73]  O. Hoegh‐Guldberg,et al.  Limiting global warming to 2 degrees Celsius is unlikely to save most coral reefs , 2013 .

[74]  Scott F. Heron,et al.  Warming Trends and Bleaching Stress of the World’s Coral Reefs 1985–2012 , 2016, Scientific Reports.

[75]  B. Willis,et al.  Historical thermal regimes define limits to coral acclimatization. , 2013, Ecology.

[76]  L. Kaufman,et al.  Dynamics of Coral Reef Benthic Assemblages of the Abrolhos Bank, Eastern Brazil: Inferences on Natural and Anthropogenic Drivers , 2013, PloS one.

[77]  C. Pérez,et al.  Mesophotic coral ecosystems occur offshore and north of the Amazon River , 2015 .

[78]  Keywan Riahi,et al.  Differences between carbon budget estimates unravelled , 2016 .

[79]  K. Casey,et al.  Spatial and temporal changes in cumulative human impacts on the world's ocean , 2015, Nature Communications.

[80]  K. Ritchie,et al.  Toxicity of Deepwater Horizon Source Oil and the Chemical Dispersant, Corexit® 9500, to Coral Larvae , 2013, PloS one.

[81]  Irene Gendzier,et al.  The New Research Agenda , 1992 .

[82]  J. Syvitski,et al.  Plausible and desirable futures in the Anthropocene: A new research agenda , 2016 .

[83]  M. Littler,et al.  Deep-water plant communities from an uncharted seamount off San Salvador Island, Bahamas: distribution, abundance, and primary productivity , 1986 .

[84]  Rogério A. B. Valle,et al.  An extensive reef system at the Amazon River mouth , 2016, Science Advances.

[85]  William K. Oestreich,et al.  Coral bleaching response index: a new tool to standardize and compare susceptibility to thermal bleaching , 2016, Global change biology.

[86]  William J. Sydeman,et al.  Responses of Marine Organisms to Climate Change across Oceans , 2016, Front. Mar. Sci..

[87]  M. Scheffer,et al.  Multiple feedbacks and the prevalence of alternate stable states on coral reefs , 2016, Coral Reefs.

[88]  John N. Kittinger,et al.  Linkages between social systems and coral reefs , 2015 .

[89]  P. Ferraro,et al.  Measuring the difference made by conservation initiatives: protected areas and their environmental and social impacts , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[90]  D. Kahneman.  Thinking, Fast and Slow , 2011 .

[91]  P. Glynn,et al.  Bioerosion and Coral Reef Growth: A Dynamic Balance , 2015 .

[92]  P. D. Polly,et al.  Merging paleobiology with conservation biology to guide the future of terrestrial ecosystems , 2017, Science.

[93]  R. Pressey,et al.  Integrated conservation and development: evaluating a community-based marine protected area project for equality of socioeconomic impacts , 2015, Philosophical Transactions of the Royal Society B: Biological Sciences.

[94]  F. Chapin,et al.  Planetary boundaries: Exploring the safe operating space for humanity , 2009 .

[95]  D. Gherardi,et al.  Composition and community structure of the coralline algal reefs from Atol das Rocas, South Atlantic, Brazil , 2001, Coral Reefs.

[96]  S. Connolly,et al.  Sensitivity of coral calcification to ocean acidification: a meta‐analysis , 2013, Global change biology.

[97]  R. Arnone,et al.  Deriving inherent optical properties from water color: a multiband quasi-analytical algorithm for optically deep waters. , 2002, Applied optics.

[98]  C. Barrett,et al.  Toward a theory of resilience for international development applications , 2014, Proceedings of the National Academy of Sciences.

[99]  Christina C. Hicks,et al.  Social drivers forewarn of marine regime shifts , 2016 .

[100]  R. Arnone,et al.  A model for the diffuse attenuation coefficient of downwelling irradiance , 2005 .

[101]  N. Knowlton,et al.  Shifting Baselines, Local Impacts, and Global Change on Coral Reefs , 2008, PLoS biology.

[102]  F. Schmidt.  Meta-Analysis , 2008 .

[103]  Peter J. Davies,et al.  Holocene Deep Water Algal Buildups on the Eastern Australian Shelf , 2004 .

[104]  P. Visscher,et al.  Decrease in Lithothamnion sp. (Rhodophyta) primary production due to the deposition of a thin sediment layer , 2008, Journal of the Marine Biological Association of the United Kingdom.

[105]  T. Hughes,et al.  China's Degraded Environment Enters A New Normal. , 2016, Trends in ecology & evolution.

[106]  Henrique M. Pereira,et al.  Regime shifts in a socio-ecological model of farmland abandonment , 2011, Landscape Ecology.

[107]  R. Gates,et al.  Building coral reef resilience through assisted evolution , 2015, Proceedings of the National Academy of Sciences.

[108]  V. Dakos,et al.  Living dangerously on borrowed time during slow, unrecognized regime shifts. , 2013, Trends in ecology & evolution.

[109]  R. Steneck,et al.  Coral Reefs Under Rapid Climate Change and Ocean Acidification , 2007, Science.

[110]  Mesophotic reef fish assemblages of the remote St. Peter and St. Paul’s Archipelago, Mid-Atlantic Ridge, Brazil , 2016, Coral Reefs.

[111]  Roberto Fioravanti Carelli Fontes,et al.  Numerical study of circulation on the inner Amazon Shelf , 2008 .

[112]  R. Steneck,et al.  Confronting Feedbacks of Degraded Marine Ecosystems , 2012, Ecosystems.

[113]  Wilfried Thuiller,et al.  Rare Species Support Vulnerable Functions in High-Diversity Ecosystems , 2013, PLoS biology.

[114]  Kelly Levin,et al.  Overcoming the tragedy of super wicked problems: constraining our future selves to ameliorate global climate change , 2012 .

[115]  K. Arrow,et al.  Looming Global-Scale Failures and Missing Institutions , 2009, Science.

[116]  P. Jones,et al.  Quantifying uncertainties in global and regional temperature change using an ensemble of observational estimates: The HadCRUT4 data set , 2012 .

[117]  H P Possingham,et al.  Assisted Colonization and Rapid Climate Change , 2008, Science.

[118]  David Mouillot,et al.  Bright spots among the world’s coral reefs , 2016, Nature.

[119]  H. Mooney,et al.  Human Domination of Earth’s Ecosystems , 1997, Renewable Energy.

[120]  P. Bongaerts,et al.  Assessing the ‘deep reef refugia’ hypothesis: focus on Caribbean reefs , 2010, Coral Reefs.

[121]  H. Possingham,et al.  The cost and feasibility of marine coastal restoration. , 2015, Ecological applications : a publication of the Ecological Society of America.

[122]  Wilfried Thuiller,et al.  Defining and measuring ecological specialization , 2010 .

[123]  Charles M. Hardin.  A Challenge to Political Science , 1989, PS: Political Science & Politics.

[124]  Yoh Iwasa,et al.  Synchronized deforestation induced by social learning under uncertainty of forest-use value , 2007 .

[125]  A. Baker.  Ecosystems: Reef corals bleach to survive change , 2001, Nature.

[126]  Erle C. Ellis,et al.  The Anthropocene is functionally and stratigraphically distinct from the Holocene , 2016, Science.

[127]  P. Munday,et al.  Potential for adaptation to climate change in a coral reef fish , 2017, Global change biology.

[128]  M. Nyström,et al.  Coral reefs as novel ecosystems: embracing new futures , 2014 .

[129]  John M. Anderies,et al.  On our rapidly shrinking capacity to comply with the planetary boundaries on climate change , 2017, Scientific Reports.

[130]  Michael P. Lesser,et al.  Ecology of mesophotic coral reefs , 2009 .

[131]  T. Morrison,et al.  New Directions for Understanding the Spatial Resilience of Social–Ecological Systems , 2017, Ecosystems.

[132]  Sean R Connolly,et al.  Evidence for multiple stressor interactions and effects on coral reefs , 2014, Global change biology.

[133]  S. Carpenter,et al.  Catastrophic shifts in ecosystems , 2001, Nature.

[134]  R. Limeburner,et al.  The Physical Oceanography of the Amazon Outflow , 1991 .

[135]  D. R. Robertson,et al.  Atlantic reef fish biogeography and evolution , 2007 .

[136]  M. Matz,et al.  Genomic determinants of coral heat tolerance across latitudes , 2015, Science.