Phylogenomic Analysis of the α Proteasome Gene Family from Early-Diverging Eukaryotes

[1]  H. Aldrich,et al.  Halophilic 20S Proteasomes of the ArchaeonHaloferax volcanii: Purification, Characterization, and Gene Sequence Analysis , 1999, Journal of bacteriology.

[2]  W Baumeister,et al.  Proteasomes and other self-compartmentalizing proteases in prokaryotes. , 1999, Trends in microbiology.

[3]  W. Doolittle,et al.  Microsporidia are related to Fungi: evidence from the largest subunit of RNA polymerase II and other proteins. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[4]  T. Embley,et al.  Early branching eukaryotes? , 1998, Current opinion in genetics & development.

[5]  J A Eisen,et al.  A phylogenomic study of the MutS family of proteins. , 1998, Nucleic acids research.

[6]  T. Cavalier-smith,et al.  A revised six‐kingdom system of life , 1998, Biological reviews of the Cambridge Philosophical Society.

[7]  Margaret R. Thomson,et al.  Vertebrate genome evolution and the zebrafish gene map , 1998, Nature Genetics.

[8]  M. Gouy,et al.  Microsporidia, amitochondrial protists, possess a 70-kDa heat shock protein gene of mitochondrial evolutionary origin. , 1998, Molecular biology and evolution.

[9]  S. Henikoff,et al.  Consensus-degenerate hybrid oligonucleotide primers for amplification of distantly related sequences. , 1998, Nucleic acids research.

[10]  Margaret R. Thomson,et al.  Vertebrate genome evolution and the zebrafish gene map , 1998, Nature Genetics.

[11]  T. Crease,et al.  The Unusually Long Small-Subunit Ribosomal RNA of the Crustacean, Daphnia pulex: Sequence and Predicted Secondary Structure , 1998, Journal of Molecular Evolution.

[12]  J A Eisen,et al.  Phylogenomics: improving functional predictions for uncharacterized genes by evolutionary analysis. , 1998, Genome research.

[13]  J. Thompson,et al.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. , 1997, Nucleic acids research.

[14]  C. Larsen,et al.  Protein Translocation Channels in the Proteasome and Other Proteases , 1997, Cell.

[15]  D. Lipman,et al.  A genomic perspective on protein families. , 1997, Science.

[16]  B. Gaut,et al.  DNA sequence evidence for the segmental allotetraploid origin of maize. , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[17]  K. H. Wolfe,et al.  Molecular evidence for an ancient duplication of the entire yeast genome , 1997, Nature.

[18]  R. Huber,et al.  Structure of 20S proteasome from yeast at 2.4Å resolution , 1997, Nature.

[19]  W. Doolittle,et al.  Alpha-tubulin from early-diverging eukaryotic lineages and the evolution of the tubulin family. , 1996, Molecular biology and evolution.

[20]  K. Strimmer,et al.  Quartet Puzzling: A Quartet Maximum-Likelihood Method for Reconstructing Tree Topologies , 1996 .

[21]  P M Kloetzel,et al.  Peptide antigen production by the proteasome: complexity provides efficiency. , 1996, Immunology today.

[22]  C. Wang,et al.  Purification and characterization of proteasomes from Trypanosoma brucei. , 1996, Molecular and biochemical parasitology.

[23]  S. Katiyar,et al.  Phylogenetic Analysis of β-Tubulin Sequences from Amitochondrial Protozoa , 1996 .

[24]  D. Wolf,et al.  Proteasomes: destruction as a programme. , 1996, Trends in biochemical sciences.

[25]  A. Roger,et al.  Direct evidence for secondary loss of mitochondria in Entamoeba histolytica. , 1995, Proceedings of the National Academy of Sciences of the United States of America.

[26]  W. Baumeister,et al.  The first characterization of a eubacterial proteasome: the 20S complex of Rhodococcus , 1995, Current Biology.

[27]  R. Huber,et al.  Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution. , 1995, Science.

[28]  W. Baumeister,et al.  Proteasome sequences in eubacteria. , 1994, Trends in biochemical sciences.

[29]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[30]  C. Vossbrinck,et al.  Phylogenetic relationships among Vairimorpha and Nosema species (Microspora) based on ribosomal RNA sequence data. , 1994, Journal of invertebrate pathology.

[31]  M. Sogin,et al.  The unusually long small subunit ribosomal RNA of Phreatamoeba balamuthi. , 1994, Nucleic acids research.

[32]  W. Baumeister,et al.  Proteasomes from Dictyostelium discoideum: characterization of structure and function. , 1993, Journal of structural biology.

[33]  W. Baumeister,et al.  Proteasomes: Multisubunit Proteinases common to Thermoplasma and Eukaryotes , 1993 .

[34]  W Baumeister,et al.  Primary structure of the Thermoplasma proteasome and its implications for the structure, function, and evolution of the multicatalytic proteinase. , 1992, Biochemistry.

[35]  E. Myers,et al.  Basic local alignment search tool. , 1990, Journal of molecular biology.

[36]  M. Sogin,et al.  Phylogenetic meaning of the kingdom concept: an unusual ribosomal RNA from Giardia lamblia. , 1989, Science.

[37]  C. Woese,et al.  Ribosomal RNA sequence suggests microsporidia are extremely ancient eukaryotes , 1987, Nature.

[38]  C. Woese,et al.  Eukaryotic ribosomes that lack a 5.8S RNA , 1986, Nature.

[39]  T. Cavalier-smith Endosymbiotic Origin Of The Mitochondrial Envelope , 1983 .

[40]  W. Fitch Toward Defining the Course of Evolution: Minimum Change for a Specific Tree Topology , 1971 .

[41]  W. Fitch Distinguishing homologous from analogous proteins. , 1970, Systematic zoology.

[42]  Leslie Klis McNeil,et al.  Evolution of the Proteasome , 2002 .

[43]  G. McFadden,et al.  Origins of microsporidia. , 1998, Trends in microbiology.

[44]  Austin L. Hughes,et al.  Evolution of the proteasome components , 1997, Immunogenetics.

[45]  K Tanaka,et al.  Structure and functions of the 20S and 26S proteasomes. , 1996, Annual review of biochemistry.

[46]  S. Katiyar,et al.  Phylogenetic analysis of beta-tubulin sequences from amitochondrial protozoa. , 1996, Molecular phylogenetics and evolution.

[47]  Brian K. Hall,et al.  Homology: The hierarchical basis of comparative biology , 1994 .

[48]  D. Wolf,et al.  Studies on the yeast proteasome uncover its basic structural features and multiple in vivo functions. , 1993, Enzyme & protein.

[49]  J. Felsenstein Phylogenies from molecular sequences: inference and reliability. , 1988, Annual review of genetics.

[50]  P. Meisel Margaret O. Dayhoff: Atlas of Protein Sequence and Structure 1969 (Volume 4) XXIV u. 361 S., 21 Ausklapptafeln, 68 Abb. und zahlreiche Tabellen. National Biomedical Research Foundation, Silver Spring/Maryland 1969. Preis $ 12,50 , 1971 .

[51]  M. O. Dayhoff,et al.  Atlas of protein sequence and structure , 1965 .

[52]  W. Baumeister,et al.  The Proteasome: Paradigm Review of a Self-compartmentalizing Protease , 2022 .