Sources of inversion variation in the small single copy (SSC) region of chloroplast genomes.

[1]  F. Wan,et al.  Complete Chloroplast Genome Sequence of a Major Invasive Species, Crofton Weed (Ageratina adenophora) , 2012, PloS one.

[2]  J. Azuma,et al.  Complete nucleotide sequence of the cotton (Gossypium barbadense L.) chloroplast genome with a comparative analysis of sequences among 9 dicot plants. , 2006, Genes & genetic systems.

[3]  N. Brisson,et al.  Recombination and the maintenance of plant organelle genome stability. , 2010, The New phytologist.

[4]  L. Mets,et al.  Recombination within the inverted repeat sequences of the Chlamydomonas reinhardii chloroplast genome produces two orientation isomers , 1985, Current Genetics.

[5]  J. Palmer,et al.  Structural evolution and flip-flop recombination of chloroplast DNA in the fern genus Osmunda , 1986, Current Genetics.

[6]  M. Zanis,et al.  Comparative analysis of complete chloroplast genome sequence and inversion variation in Lasthenia burkei (Madieae, Asteraceae). , 2014, American journal of botany.

[7]  T. Lybrand,et al.  Chloroplast genome sequencing analysis of Heterosigma akashiwo CCMP452 (West Atlantic) and NIES293 (West Pacific) strains , 2008, BMC Genomics.

[8]  Jeffrey D. Palmer,et al.  Chloroplast DNA exists in two orientations , 1983, Nature.

[9]  Lingli Dong,et al.  Complete Chloroplast Genome Sequences of Mongolia Medicine Artemisia frigida and Phylogenetic Relationships with Other Plants , 2013, PloS one.

[10]  G. Cannon,et al.  DNA Replication in Chloroplasts , 1993 .

[11]  A. J. Bendich,et al.  Most chloroplast DNA of maize seedlings in linear molecules with defined ends and branched forms. , 2004, Journal of molecular biology.

[12]  Lei Li,et al.  Complete chloroplast genome sequences of Praxelis (Eupatorium catarium Veldkamp), an important invasive species. , 2014, Gene.

[13]  J. Palmer,et al.  Comparative organization of chloroplast genomes. , 1985, Annual review of genetics.

[14]  Jerrold I. Davis,et al.  Chloroplast DNA inversions and the origin of the grass family (Poaceae). , 1992, Proceedings of the National Academy of Sciences of the United States of America.

[15]  B. Gravendeel,et al.  The Complete Chloroplast Genome of 17 Individuals of Pest Species Jacobaea vulgaris: SNPs, Microsatellites and Barcoding Markers for Population and Phylogenetic Studies , 2011, DNA research : an international journal for rapid publication of reports on genes and genomes.

[16]  K. Kowallik,et al.  Structural organization of the chloroplast genome of the chromophytic algaVaucheria bursata , 2004, Plant Molecular Biology.

[17]  Jun Yu,et al.  The Complete Chloroplast Genome Sequence of Date Palm (Phoenix dactylifera L.) , 2010, PloS one.

[18]  James Leebens-Mack,et al.  Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns , 2007, Proceedings of the National Academy of Sciences.

[19]  J. Palmer,et al.  The distribution and phylogenetic significance of a 50-kb chloroplast DNA inversion in the flowering plant family Leguminosae. , 1996, Molecular phylogenetics and evolution.

[20]  C. P. Randle,et al.  Recombination, Heteroplasmy, Haplotype Polymorphism, and Paralogy in Plastid Genes: Implications for Plant Molecular Systematics , 2004 .

[21]  Xiaojun Nie,et al.  Comparative Analysis of Asteraceae Chloroplast Genomes: Structural Organization, RNA Editing and Evolution , 2015, Plant Molecular Biology Reporter.

[22]  J. Palmer,et al.  ORGANIZATION OF THE CHLOROPLAST GENOME OF THE FRESHWATER CENTRIC DIATOM CYCLOTELLA MENEGHINIANA 1 , 1992 .