Constructing a meaningful evolutionary average at the phylogenetic center of mass
暂无分享,去创建一个
[1] R. Doolittle,et al. A simple method for displaying the hydropathic character of a protein. , 1982, Journal of molecular biology.
[2] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[3] T. D. Schneider,et al. Sequence logos: a new way to display consensus sequences. , 1990, Nucleic acids research.
[4] M. Levitt. Conformational preferences of amino acids in globular proteins. , 1978, Biochemistry.
[5] Yoshihiro Yamanishi,et al. The inference of protein-protein interactions by co-evolutionary analysis is improved by excluding the information about the phylogenetic relationships , 2005, Bioinform..
[6] B. Ashby,et al. Dopamine and schizophrenia , 1990, Nature.
[7] L. Cavalli-Sforza,et al. ANALYSIS OF HUMAN EVOLUTION UNDER RANDOM GENETIC DRIFT. , 1964, Cold Spring Harbor symposia on quantitative biology.
[8] Bette Korber,et al. Structure of a V3-Containing HIV-1 gp120 Core , 2005, Science.
[9] R. Durrett. Probability: Theory and Examples , 1993 .
[10] L. Cavalli-Sforza,et al. PHYLOGENETIC ANALYSIS: MODELS AND ESTIMATION PROCEDURES , 1967, Evolution; international journal of organic evolution.
[11] S F Altschul,et al. Weights for data related by a tree. , 1989, Journal of molecular biology.
[12] Osamu Gotoh,et al. A weighting system and algorithm for aligning many phylogenetically related sequences , 1995, Comput. Appl. Biosci..
[13] Martin Vingron,et al. A fast and sensitive multiple sequence alignment algorithm , 1989, Comput. Appl. Biosci..
[14] J. Felsenstein. Maximum-likelihood estimation of evolutionary trees from continuous characters. , 1973, American journal of human genetics.
[15] J. Felsenstein. Phylogenies and the Comparative Method , 1985, The American Naturalist.
[16] P. Ponnuswamy,et al. Positional flexibilities of amino acid residues in globular proteins , 2009 .
[17] Adam Eyre-Walker,et al. Molecular Evolution by Wen-Hsiung Li. Published by Sinauer Associates, Sunderland, MA, USA. ISBN: 0-87893-463-4 (cloth). , 1997 .
[18] Anders Krogh,et al. Maximum Entropy Weighting of Aligned Sequences of Proteins or DNA , 1995, ISMB.
[19] William R. Taylor,et al. The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..
[20] C. Lawrence,et al. The Relative Inefficiency of Sequence Weights Approaches in Determining a Nucleotide Position Weight Matrix , 2005, Statistical applications in genetics and molecular biology.
[21] C. Chothia,et al. Volume changes in protein evolution. , 1994, Journal of molecular biology.
[22] P. Sharp,et al. Rates and dates of divergence between AIDS virus nucleotide sequences. , 1988, Molecular biology and evolution.
[23] C. Debouck,et al. Human immunodeficiency virus type 1 neutralization epitope with conserved architecture elicits early type-specific antibodies in experimentally infected chimpanzees. , 1988, Proceedings of the National Academy of Sciences of the United States of America.
[24] D. Nickle,et al. Consensus and Ancestral State HIV Vaccines , 2003, Science.
[25] W. Bruno. Modeling residue usage in aligned protein sequences via maximum likelihood. , 1996, Molecular biology and evolution.
[26] J. Janin,et al. Surface and inside volumes in globular proteins , 1979, Nature.
[27] S. Altschul,et al. Equal animals , 1990, Nature.
[28] M Vingron,et al. Weighting in sequence space: a comparison of methods in terms of generalized sequences. , 1993, Proceedings of the National Academy of Sciences of the United States of America.
[29] P. Argos,et al. Weighting aligned protein or nucleic acid sequences to correct for unequal representation. , 1990, Journal of molecular biology.
[30] Feng Gao,et al. Diversity Considerations in HIV-1 Vaccine Selection , 2002, Science.
[31] Julie Dawn Thompson,et al. Improved sensitivity of profile searches through the use of sequence weights and gap excision , 1994, Comput. Appl. Biosci..
[32] S. Henikoff,et al. Position-based sequence weights. , 1994, Journal of molecular biology.