Incorporating Electronic Information into Machine Learning Potential Energy Surfaces via Approaching the Ground-State Electronic Energy as a Function of Atom-Based Electronic Populations.
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Kristin A. Persson | Xiaowei Xie | David W. Small | K. Persson | Xiaowei Xie | Xiaowei Xie | Kristin A. Persson | David W. Small
[1] P. Dugourd,et al. Dissociation pathways and binding energies of (LiH)nLi+ and (LiH)nLi+3 clusters , 1996 .
[2] Jörg Behler,et al. A Full-Dimensional Neural Network Potential-Energy Surface for Water Clusters up to the Hexamer , 2013 .
[3] Martin Winter,et al. The Solid Electrolyte Interphase – The Most Important and the Least Understood Solid Electrolyte in Rechargeable Li Batteries , 2009 .
[4] Andrea Grisafi,et al. Symmetry-Adapted Machine Learning for Tensorial Properties of Atomistic Systems. , 2017, Physical review letters.
[5] Ryo Nagai,et al. Completing density functional theory by machine learning hidden messages from molecules , 2019, npj Computational Materials.
[6] E Weinan,et al. DeePMD-kit: A deep learning package for many-body potential energy representation and molecular dynamics , 2017, Comput. Phys. Commun..
[7] Nongnuch Artrith,et al. High-dimensional neural-network potentials for multicomponent systems: Applications to zinc oxide , 2011 .
[8] M. Galizio. JEAB: past, present, and future. , 2019, Journal of the experimental analysis of behavior.
[9] Sebastian Dick,et al. Machine learning accurate exchange and correlation functionals of the electronic density , 2020, Nature Communications.
[10] T. Voorhis,et al. Direct optimization method to study constrained systems within density-functional theory , 2005 .
[11] John C. Snyder,et al. Orbital-free bond breaking via machine learning. , 2013, The Journal of chemical physics.
[12] P. Balbuena,et al. Theoretical studies to understand surface chemistry on carbon anodes for lithium-ion batteries: reduction mechanisms of ethylene carbonate. , 2001, Journal of the American Chemical Society.
[13] Dmitrij Rappoport,et al. Property-optimized gaussian basis sets for molecular response calculations. , 2010, The Journal of chemical physics.
[14] Weitao Yang,et al. Multiscale Quantum Mechanics/Molecular Mechanics Simulations with Neural Networks. , 2016, Journal of chemical theory and computation.
[15] Gábor Csányi,et al. Comparing molecules and solids across structural and alchemical space. , 2015, Physical chemistry chemical physics : PCCP.
[16] P. Schleyer,et al. Lithium chemistry : a theoretical and experimental overview , 1995 .
[17] Kondo‐François Aguey‐Zinsou,et al. Direct and reversible hydrogen storage of lithium hydride (LiH) nanoconfined in high surface area graphite , 2016 .
[18] Volker L. Deringer,et al. Understanding the thermal properties of amorphous solids using machine-learning-based interatomic potentials , 2018 .
[19] J. Berg,et al. Molecular dynamics simulations of biomolecules , 2002, Nature Structural Biology.
[20] Michele Ceriotti,et al. A Data-Driven Construction of the Periodic Table of the Elements , 2018, 1807.00236.
[21] T. Morawietz,et al. A density-functional theory-based neural network potential for water clusters including van der Waals corrections. , 2013, The journal of physical chemistry. A.
[22] Swapan K. Pati,et al. Novel properties of graphene nanoribbons: a review , 2010 .
[23] K-R Müller,et al. SchNet - A deep learning architecture for molecules and materials. , 2017, The Journal of chemical physics.
[24] K. Houk,et al. Oligoacenes: theoretical prediction of open-shell singlet diradical ground states. , 2004, Journal of the American Chemical Society.
[25] Tristan Bereau,et al. Transferable Atomic Multipole Machine Learning Models for Small Organic Molecules. , 2015, Journal of chemical theory and computation.
[26] Johann Gasteiger,et al. Electronegativity equalization: application and parametrization , 1985 .
[27] T. Van Voorhis,et al. Constrained density functional theory. , 2011, Chemical reviews.
[28] A. Chaffee,et al. Charge Equilibration Based on Atomic Ionization in Metal–Organic Frameworks , 2015 .
[29] Wolfram Koch,et al. A Chemist's Guide to Density Functional Theory , 2000 .
[30] M. Marques,et al. Recent advances and applications of machine learning in solid-state materials science , 2019, npj Computational Materials.
[31] O. Kühn,et al. Chapter 6. Electron Transfer , 2007 .
[32] Stefan Blügel,et al. Ground States of Constrained Systems: Application to Cerium Impurities , 1984 .
[33] Volker L. Deringer,et al. Machine learning based interatomic potential for amorphous carbon , 2016, 1611.03277.
[34] Samuel S. Schoenholz,et al. Neural Message Passing for Quantum Chemistry , 2017, ICML.
[35] R. Marcus,et al. Electron transfers in chemistry and biology , 1985 .
[36] Jiahao Chen,et al. QTPIE: Charge transfer with polarization current equalization. A fluctuating charge model with correct asymptotics , 2007, 0807.2068.
[37] Electronic properties of doped fullerenes , 2001 .
[38] Kun Yao,et al. Kinetic Energy of Hydrocarbons as a Function of Electron Density and Convolutional Neural Networks. , 2015, Journal of chemical theory and computation.
[39] U. Stalmach,et al. Effective conjugation length and UV/vis spectra of oligomers , 1997 .
[40] Single-centre expansion of Gaussian basis functions and the angular decomposition of their overlap integrals , 1989 .
[41] Klaus-Robert Müller,et al. Finding Density Functionals with Machine Learning , 2011, Physical review letters.
[42] Alexie M. Kolpak,et al. Discovering charge density functionals and structure-property relationships with PROPhet: A general framework for coupling machine learning and first-principles methods , 2017, Scientific Reports.
[43] Jun Chen,et al. Communication: Fitting potential energy surfaces with fundamental invariant neural network. , 2016, The Journal of chemical physics.
[44] P. P. Ewald. Die Berechnung optischer und elektrostatischer Gitterpotentiale , 1921 .
[45] Alberto Fabrizio,et al. Transferable Machine-Learning Model of the Electron Density , 2018, ACS central science.
[46] Stefan Goedecker,et al. Interatomic potentials for ionic systems with density functional accuracy based on charge densities obtained by a neural network , 2015, 1501.07344.
[47] Donald G. Truhlar,et al. Ab Initio Molecular Dynamics: Basic Theory and Advanced Methods , 2010 .
[48] M. Allendorf,et al. Tuning metal hydride thermodynamics via size and composition: Li-H, Mg-H, Al-H, and Mg-Al-H nanoclusters for hydrogen storage. , 2012, Physical chemistry chemical physics : PCCP.
[49] John E Herr,et al. The many-body expansion combined with neural networks. , 2016, The Journal of chemical physics.
[50] Weitao Yang,et al. Force Field for Water Based on Neural Network. , 2018, The journal of physical chemistry letters.
[51] Gerbrand Ceder,et al. Constructing first-principles phase diagrams of amorphous LixSi using machine-learning-assisted sampling with an evolutionary algorithm. , 2018, The Journal of chemical physics.
[52] Shyue Ping Ong,et al. An electrostatic spectral neighbor analysis potential for lithium nitride , 2019, npj Computational Materials.
[53] Volker L. Deringer,et al. Machine Learning Interatomic Potentials as Emerging Tools for Materials Science , 2019, Advanced materials.
[54] K. Müller,et al. Fast and accurate modeling of molecular atomization energies with machine learning. , 2011, Physical review letters.
[55] B. Rao,et al. Molecular cluster calculations of the electronic structure of lithium hydride , 1986 .
[56] Andrea Grisafi,et al. Incorporating long-range physics in atomic-scale machine learning. , 2019, The Journal of chemical physics.
[57] K. Sanui,et al. Estimate of the effective conjugation length of polythiophene from its|χ(3)(ω;ω,ω,−ω)|spectrum at excitonic resonance , 1998 .
[58] Yuanqing Wang,et al. Graph Nets for Partial Charge Prediction , 2019, ArXiv.
[59] R. A. Nistor,et al. A generalization of the charge equilibration method for nonmetallic materials. , 2006, The Journal of chemical physics.
[60] Jimmy Ba,et al. Adam: A Method for Stochastic Optimization , 2014, ICLR.
[61] W. Goddard,et al. Charge equilibration for molecular dynamics simulations , 1991 .
[62] John E Herr,et al. Metadynamics for training neural network model chemistries: A competitive assessment. , 2017, The Journal of chemical physics.
[63] K. Ishikawa,et al. Time-dependent multiconfiguration self-consistent-field method based on the occupation-restricted multiple-active-space model for multielectron dynamics in intense laser fields , 2014, 1411.3077.
[64] M. Gillan,et al. Calculation of properties of crystalline lithium hydride using correlated wave function theory , 2009 .
[65] T Verstraelen,et al. ACKS2: atom-condensed Kohn-Sham DFT approximated to second order. , 2013, The Journal of chemical physics.
[66] David W Toth,et al. The TensorMol-0.1 model chemistry: a neural network augmented with long-range physics , 2017, Chemical science.
[67] Adrian E. Roitberg,et al. Less is more: sampling chemical space with active learning , 2018, The Journal of chemical physics.
[68] A. Becke. A multicenter numerical integration scheme for polyatomic molecules , 1988 .
[69] Antonio Díaz Pozuelo. High-dimensional neural network potentials , 2016 .
[70] K. Fukui,et al. Horizons of Quantum Chemistry , 1980 .
[71] S. Harder. Molecular early main group metal hydrides: synthetic challenge, structures and applications. , 2012, Chemical communications.
[72] Kipton Barros,et al. Learning molecular energies using localized graph kernels. , 2016, The Journal of chemical physics.
[73] Markus Meuwly,et al. PhysNet: A Neural Network for Predicting Energies, Forces, Dipole Moments, and Partial Charges. , 2019, Journal of chemical theory and computation.
[74] Volker L. Deringer,et al. Growth Mechanism and Origin of High sp^{3} Content in Tetrahedral Amorphous Carbon. , 2018, Physical review letters.
[75] Gábor Csányi,et al. Gaussian approximation potentials: A brief tutorial introduction , 2015, 1502.01366.
[76] John E. Herr,et al. Compressing physics with an autoencoder: Creating an atomic species representation to improve machine learning models in the chemical sciences. , 2019, The Journal of chemical physics.
[77] D. Jérome. Organic Conductors: From Charge Density Wave TTF—TCNQ to Superconducting (TMTSF)2PF6 , 2005 .
[78] D. Banabic,et al. Recent advances and applications , 2004 .
[79] B. Tidor. Molecular dynamics simulations , 1997, Current Biology.
[80] Qin Wu,et al. Direct calculation of electron transfer parameters through constrained density functional theory. , 2006, The journal of physical chemistry. A.
[81] Liwu Huang,et al. Synthesis of destabilized nanostructured lithium hydride via hydrogenation of lithium electrochemically inserted into graphite , 2015 .
[82] Alexandre Tkatchenko,et al. Non-covalent interactions across organic and biological subsets of chemical space: Physics-based potentials parametrized from machine learning. , 2017, The Journal of chemical physics.
[83] A. Stasch. Well-defined, nanometer-sized LiH cluster compounds stabilized by pyrazolate ligands. , 2014, Angewandte Chemie.
[84] A. Becke. Density-functional thermochemistry. III. The role of exact exchange , 1993 .
[85] Paul L. A. Popelier,et al. A polarizable high-rank quantum topological electrostatic potential developed using neural networks: Molecular dynamics simulations on the hydrogen fluoride dimer , 2007 .
[86] M. Frisch,et al. Ab Initio Calculation of Vibrational Absorption and Circular Dichroism Spectra Using Density Functional Force Fields , 1994 .
[87] Anand Chandrasekaran,et al. Solving the electronic structure problem with machine learning , 2019, npj Computational Materials.
[88] M. Levy. Universal variational functionals of electron densities, first-order density matrices, and natural spin-orbitals and solution of the v-representability problem. , 1979, Proceedings of the National Academy of Sciences of the United States of America.
[89] Michele Parrinello,et al. Generalized neural-network representation of high-dimensional potential-energy surfaces. , 2007, Physical review letters.
[90] M. Head‐Gordon,et al. Long-range corrected hybrid density functionals with damped atom-atom dispersion corrections. , 2008, Physical chemistry chemical physics : PCCP.
[91] Hong Li,et al. Review on modeling of the anode solid electrolyte interphase (SEI) for lithium-ion batteries , 2018, npj Computational Materials.
[92] Mengyun Nie,et al. Lithium Ion Battery Graphite Solid Electrolyte Interphase Revealed by Microscopy and Spectroscopy , 2013 .
[93] Li Li,et al. Bypassing the Kohn-Sham equations with machine learning , 2016, Nature Communications.
[94] Alireza Khorshidi,et al. Amp: A modular approach to machine learning in atomistic simulations , 2016, Comput. Phys. Commun..
[95] Christian Trott,et al. Spectral neighbor analysis method for automated generation of quantum-accurate interatomic potentials , 2014, J. Comput. Phys..
[96] Alán Aspuru-Guzik,et al. Advances in molecular quantum chemistry contained in the Q-Chem 4 program package , 2014, Molecular Physics.
[97] Wibe A. de Jong,et al. Prediction of Atomization Energy Using Graph Kernel and Active Learning , 2018, The Journal of chemical physics.
[98] Cheng Shang,et al. LASP: Fast global potential energy surface exploration , 2019, WIREs Computational Molecular Science.
[99] Emanuel Peled,et al. The Electrochemical Behavior of Alkali and Alkaline Earth Metals in Nonaqueous Battery Systems—The Solid Electrolyte Interphase Model , 1979 .
[100] Chi Chen,et al. Graph Networks as a Universal Machine Learning Framework for Molecules and Crystals , 2018, Chemistry of Materials.
[101] Stefan Grimme,et al. Effect of the damping function in dispersion corrected density functional theory , 2011, J. Comput. Chem..
[102] J S Smith,et al. ANI-1: an extensible neural network potential with DFT accuracy at force field computational cost , 2016, Chemical science.
[103] Kipton Barros,et al. Approaching coupled cluster accuracy with a general-purpose neural network potential through transfer learning , 2019, Nature Communications.
[104] Anders S. Christensen,et al. Alchemical and structural distribution based representation for universal quantum machine learning. , 2017, The Journal of chemical physics.
[105] Gábor Csányi,et al. Edge-functionalized and substitutionally doped graphene nanoribbons: Electronic and spin properties , 2007, Physical Review B.
[106] Y. Aso,et al. Synthesis and spectroscopic properties of a series of beta-blocked long oligothiophenes up to the 96-mer: revaluation of effective conjugation length. , 2003, Journal of the American Chemical Society.
[107] J. Behler. First Principles Neural Network Potentials for Reactive Simulations of Large Molecular and Condensed Systems. , 2017, Angewandte Chemie.
[108] G. R. Schleder,et al. From DFT to machine learning: recent approaches to materials science–a review , 2019, Journal of Physics: Materials.
[109] Gerbrand Ceder,et al. Efficient and accurate machine-learning interpolation of atomic energies in compositions with many species , 2017, 1706.06293.
[110] K. Müller,et al. Machine Learning Predictions of Molecular Properties: Accurate Many-Body Potentials and Nonlocality in Chemical Space , 2015, The journal of physical chemistry letters.
[111] Kristof T. Schütt,et al. Unifying machine learning and quantum chemistry with a deep neural network for molecular wavefunctions , 2019, Nature Communications.
[112] Michael Gastegger,et al. Machine learning molecular dynamics for the simulation of infrared spectra† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c7sc02267k , 2017, Chemical science.
[113] Garnet Kin-Lic Chan,et al. The radical character of the acenes: a density matrix renormalization group study. , 2007, The Journal of chemical physics.
[114] J. Behler. Atom-centered symmetry functions for constructing high-dimensional neural network potentials. , 2011, The Journal of chemical physics.
[115] William A Goddard,et al. Polarizable charge equilibration model for predicting accurate electrostatic interactions in molecules and solids. , 2017, The Journal of chemical physics.
[116] Car,et al. Unified approach for molecular dynamics and density-functional theory. , 1985, Physical review letters.
[117] R. Kondor,et al. On representing chemical environments , 2012, 1209.3140.
[118] Oded Hod,et al. Electronic structure and stability of semiconducting graphene nanoribbons. , 2006, Nano letters.
[119] Li Li,et al. Understanding Machine-learned Density Functionals , 2014, ArXiv.
[120] T. Inabe,et al. What Happens at the Interface between TTF and TCNQ Crystals (TTF = Tetrathiafulvalene and TCNQ = 7,7,8,8-Tetracyanoquinodimethane)? , 2012 .
[121] Yoshua Bengio,et al. Deep Sparse Rectifier Neural Networks , 2011, AISTATS.
[122] Klaus-Robert Müller,et al. Assessment and Validation of Machine Learning Methods for Predicting Molecular Atomization Energies. , 2013, Journal of chemical theory and computation.
[123] V. Ozoliņš,et al. First-principles calculated decomposition pathways for LiBH4 nanoclusters , 2016, Scientific Reports.
[124] Sereina Riniker,et al. Machine Learning of Partial Charges Derived from High-Quality Quantum-Mechanical Calculations , 2018, J. Chem. Inf. Model..
[125] Randall Q Snurr,et al. An Extended Charge Equilibration Method. , 2012, The journal of physical chemistry letters.
[126] John E. Herr,et al. Intrinsic Bond Energies from a Bonds-in-Molecules Neural Network. , 2017, The journal of physical chemistry letters.
[127] Jonathan Schmidt,et al. Machine Learning the Physical Nonlocal Exchange-Correlation Functional of Density-Functional Theory. , 2019, The journal of physical chemistry letters.