Mapping co-ancestry connections between the genome of a Medieval individual and modern Europeans

[1]  Fernando Racimo,et al.  Beyond broad strokes: sociocultural insights from the study of ancient genomes , 2019, Nature Reviews Genetics.

[2]  Domingo C. Salazar-García,et al.  The genomic history of the Iberian Peninsula over the past 8000 years , 2019 .

[3]  C. Lalueza-Fox,et al.  Genome-wide data from the Bubi of Bioko Island clarifies the Atlantic fringe of the Bantu dispersal , 2019, BMC Genomics.

[4]  Valdis B. Guðmundsdóttir,et al.  Ancient genomes from Iceland reveal the making of a human population , 2018, Science.

[5]  Mattias Jakobsson,et al.  Four millennia of Iberian biomolecular prehistory illustrate the impact of prehistoric migrations at the far end of Eurasia , 2018, Proceedings of the National Academy of Sciences.

[6]  K. Veeramah,et al.  Understanding 6th-century barbarian social organization and migration through paleogenomics , 2018, Nature Communications.

[7]  Mattias Jakobsson,et al.  Population genomics of Mesolithic Scandinavia: Investigating early postglacial migration routes and high-latitude adaptation , 2018, PLoS biology.

[8]  John R. Stevens,et al.  A comparison of multiple testing adjustment methods with block-correlation positively-dependent tests , 2017, PloS one.

[9]  R. Francis,et al.  pophelper: an R package and web app to analyse and visualize population structure , 2017, Molecular ecology resources.

[10]  D. Fernandes,et al.  The Identification of a 1916 Irish Rebel: New Approach for Estimating Relatedness From Low Coverage Homozygous Genomes , 2016, Scientific Reports.

[11]  G. Coop,et al.  Inferring Recent Demography from Isolation by Distance of Long Shared Sequence Blocks , 2016, Genetics.

[12]  Wenqing Fu,et al.  Robust Inference of Identity by Descent from Exome-Sequencing Data. , 2016, American journal of human genetics.

[13]  Swapan Mallick,et al.  Genomic insights into the origin of farming in the ancient Near East , 2016, Nature.

[14]  Hans-Jürgen Bandelt,et al.  HaploGrep 2: mitochondrial haplogroup classification in the era of high-throughput sequencing , 2016, Nucleic Acids Res..

[15]  Guy Cochrane,et al.  Biocuration of functional annotation at the European nucleotide archive , 2015, Nucleic Acids Res..

[16]  R. Durbin,et al.  Iron Age and Anglo-Saxon genomes from East England reveal British migration history , 2015, Nature Communications.

[17]  D. Reich,et al.  Genome-wide patterns of selection in 230 ancient Eurasians , 2015, Nature.

[18]  G. Renaud,et al.  Schmutzi: estimation of contamination and endogenous mitochondrial consensus calling for ancient DNA , 2015, Genome Biology.

[19]  Søren Brunak,et al.  Population genomics of Bronze Age Eurasia , 2015, Nature.

[20]  Swapan Mallick,et al.  Massive migration from the steppe was a source for Indo-European languages in Europe , 2015, Nature.

[21]  Eske Willerslev,et al.  Improving access to endogenous DNA in ancient bones and teeth , 2015, Scientific Reports.

[22]  János Dani,et al.  Genome flux and stasis in a five millennium transect of European prehistory , 2014, Nature Communications.

[23]  Christopher R. Gignoux,et al.  The genetics of Mexico recapitulates Native American substructure and affects biomedical traits , 2014, Science.

[24]  J. Stamatoyannopoulos,et al.  Maritime route of colonization of Europe , 2014, Proceedings of the National Academy of Sciences.

[25]  Arcadi Navarro,et al.  Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European , 2014, Nature.

[26]  Bonnie Berger,et al.  Ancient human genomes suggest three ancestral populations for present-day Europeans , 2013, Nature.

[27]  R Core Team,et al.  R: A language and environment for statistical computing. , 2014 .

[28]  M. Jakobsson,et al.  Accurate sex identification of ancient human remains using DNA shotgun sequencing , 2013 .

[29]  D. Reich,et al.  A Novel Approach to Estimating Heterozygosity from Low-Coverage Genome Sequence , 2013, Genetics.

[30]  B. Browning,et al.  Improving the Accuracy and Efficiency of Identity-by-Descent Detection in Population Data , 2013, Genetics.

[31]  Christopher R. Gignoux,et al.  Gene flow from North Africa contributes to differential human genetic diversity in southern Europe , 2013, Proceedings of the National Academy of Sciences.

[32]  Philip L. F. Johnson,et al.  mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters , 2013, Bioinform..

[33]  Nicolaas Gerardus Hendricus Deen.  "Glossaria duo Vasco-Islandica" , 2013 .

[34]  Sergi Valverde,et al.  Phage-bacteria infection networks. , 2013, Trends in microbiology.

[35]  Peter L. Ralph,et al.  The Geography of Recent Genetic Ancestry across Europe , 2012, PLoS biology.

[36]  Gonçalo R. Abecasis,et al.  The variant call format and VCFtools , 2011, Bioinform..

[37]  Marcel Martin.  Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .

[38]  Anders Albrechtsen,et al.  Natural Selection and the Distribution of Identity-by-Descent in the Human Genome , 2010, Genetics.

[39]  M. DePristo,et al.  The Genome Analysis Toolkit: a MapReduce framework for analyzing next-generation DNA sequencing data. , 2010, Genome research.

[40]  Pedro M. Valero-Mora,et al.  ggplot2: Elegant Graphics for Data Analysis , 2010 .

[41]  Mark Newman,et al.  Networks: An Introduction , 2010 .

[42]  Brian L. Browning,et al.  High-resolution detection of identity by descent in unrelated individuals. , 2010, American journal of human genetics.

[43]  Hadley Wickham,et al.  ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .

[44]  David H. Alexander,et al.  Fast model-based estimation of ancestry in unrelated individuals. , 2009, Genome research.

[45]  Gonçalo R. Abecasis,et al.  The Sequence Alignment/Map format and SAMtools , 2009, Bioinform..

[46]  Richard Durbin,et al.  Sequence analysis Fast and accurate short read alignment with Burrows – Wheeler transform , 2009 .

[47]  Inmaculada Ollich i Castanyer.  La necròpolis medieval de l´Esquerda (segles VIII- XIV dC). Cronologia i noves perspectives de recerca , 2009 .

[48]  A C C Gibbs,et al.  Data Analysis , 2009, Encyclopedia of Database Systems.

[49]  Amit R. Indap,et al.  Genes mirror geography within Europe , 2008, Nature.

[50]  Christian Gieger,et al.  Correlation between Genetic and Geographic Structure in Europe , 2008, Current Biology.

[51]  Aric Hagberg,et al.  Exploring Network Structure, Dynamics, and Function using NetworkX , 2008, Proceedings of the Python in Science Conference.

[52]  B. Browning,et al.  Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. , 2007, American journal of human genetics.

[53]  Manuel A. R. Ferreira,et al.  PLINK: a tool set for whole-genome association and population-based linkage analyses. , 2007, American journal of human genetics.

[54]  D. Reich,et al.  Population Structure and Eigenanalysis , 2006, PLoS genetics.

[55]  Y. Benjamini,et al.  Adaptive linear step-up procedures that control the false discovery rate , 2006 .

[56]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[57]  Sandrine Dudoit,et al.  Multiple Testing Procedures: the multtest Package and Applications to Genomics , 2005 .

[58]  D. Turnbull,et al.  Reanalysis and revision of the Cambridge reference sequence for human mitochondrial DNA , 1999, Nature Genetics.

[59]  Seymour Geisser,et al.  Statistical Principles in Experimental Design , 1963 .