Programmed Death in Bacteria

SUMMARY Programmed cell death (PCD) in bacteria plays an important role in developmental processes, such as lysis of the mother cell during sporulation of Bacillus subtilis and lysis of vegetative cells in fruiting body formation of Myxococcus xanthus. The signal transduction pathway leading to autolysis of the mother cell includes the terminal sporulation sigma factor EςK, which induces the synthesis of autolysins CwlC and CwlH. An activator of autolysin in this and other PCD processes is yet to be identified. Autolysis plays a role in genetic exchange in Streptococcus pneumoniae, and the gene for the major autolysin, lytA, is located in the same operon with recA. DNA from lysed cells is picked up by their neighbors and recombined into the chromosome by RecA. LytA requires an unknown activator controlled by a sensory kinase, VncS. Deletion of vncS inhibits autolysis and also decreases killing by unrelated antibiotics. This observation suggests that PCD in bacteria serves to eliminate damaged cells, similar to apoptosis of defective cells in metazoa. The presence of genes affecting survival without changing growth sensitivity to antibiotics (vncS, lytA, hipAB, sulA, and mar) indicates that bacteria are able to control their fate. Elimination of defective cells could limit the spread of a viral infection and donate nutrients to healthy kin cells. An altruistic suicide would be challenged by the appearance of asocial mutants without PCD and by the possibility of maladaptive total suicide in response to a uniformly present lethal factor or nutrient depletion. It is proposed that a low rate of mutation serves to decrease the probability that asocial mutants without PCD will take over the population. It is suggested that PCD is disabled in persistors, rare cells that are resistant to killing, to ensure population survival. It is suggested that lack of nutrients leads to the stringent response that suppresses PCD, producing a state of tolerance to antibiotics, allowing cells to discriminate between nutrient deprivation and unrepairable damage. High levels of persistors are apparently responsible for the extraordinary survival properties of bacterial biofilms, and genes affecting persistence appear to be promising targets for development of drugs aimed at eradicating recalcitrant infections. PCD in unicellular eukaryotes is also considered, including aging in Saccharomyces cerevisiae. Apoptosis-like elimination of defective cells in S. cerevisiae and protozoa suggests that all unicellular life forms evolved altruistic programmed death that serves a variety of useful functions.

[1]  R. Lenski,et al.  Developmental cheating in the social bacterium Myxococcus xanthus , 2000, Nature.

[2]  M. Gartenberg The Sir proteins of Saccharomyces cerevisiae: mediators of transcriptional silencing and much more. , 2000, Current opinion in microbiology.

[3]  A. Brooun,et al.  A Dose-Response Study of Antibiotic Resistance inPseudomonas aeruginosa Biofilms , 2000, Antimicrobial Agents and Chemotherapy.

[4]  K. Gerdes Toxin-Antitoxin Modules May Regulate Synthesis of Macromolecules during Nutritional Stress , 2000, Journal of bacteriology.

[5]  R. Kolter,et al.  Genetic analyses of bacterial biofilm formation. , 1999, Current opinion in microbiology.

[6]  G. Kroemer,et al.  Mitochondrial Membrane Permeabilization during the Apoptotic Process , 1999, Annals of the New York Academy of Sciences.

[7]  K. Alibek,et al.  The Soviet Union's Anti‐Agricultural Biological Weapons , 1999, Annals of the New York Academy of Sciences.

[8]  Ronit Vogt Sionov,et al.  The cellular response to p53: the decision between life and death , 1999, Oncogene.

[9]  Yasuo Kobayashi,et al.  Characterization of a New Sigma-K-Dependent Peptidoglycan Hydrolase Gene That Plays a Role in Bacillus subtilis Mother Cell Lysis , 1999, Journal of bacteriology.

[10]  R. Kolter,et al.  Mutations Enhancing Amino Acid Catabolism Confer a Growth Advantage in Stationary Phase , 1999, Journal of bacteriology.

[11]  S. Kornbluth,et al.  Mitochondria at the Crossroad of Apoptotic Cell Death , 1999, Journal of bioenergetics and biomembranes.

[12]  M. Sherman,et al.  The Function of HSP72 in Suppression of c-Jun N-terminal Kinase Activation Can Be Dissociated from Its Role in Prevention of Protein Damage* , 1999, The Journal of Biological Chemistry.

[13]  M Crompton,et al.  The mitochondrial permeability transition pore and its role in cell death. , 1999, The Biochemical journal.

[14]  S. Normark,et al.  Emergence of vancomycin tolerance in Streptococcus pneumoniae , 1999, Nature.

[15]  K. Gerdes,et al.  Multiple hok genes on the chromosome of Escherichia coli , 1999, Molecular microbiology.

[16]  D A Turner,et al.  Use of intrinsic optical signals to monitor physiological changes in brain tissue slices. , 1999, Methods.

[17]  Jazwinski Sm Molecular mechanisms of yeast longevity. , 1999 .

[18]  J. Costerton,et al.  Bacterial biofilms: a common cause of persistent infections. , 1999, Science.

[19]  Stephan J. Sigrist,et al.  Oxygen Stress: A Regulator of Apoptosis in Yeast , 1999, The Journal of cell biology.

[20]  I. Booth,et al.  Protection of Escherichia coli cells against extreme turgor by activation of MscS and MscL mechanosensitive channels: identification of genes required for MscS activity , 1999, The EMBO journal.

[21]  L. Kroos,et al.  Control of σ factor activity during Bacillus subtilis sporulation , 1999, Molecular microbiology.

[22]  E. Koonin,et al.  The domains of death: evolution of the apoptosis machinery. , 1999, Trends in biochemical sciences.

[23]  H. Engelberg-Kulka,et al.  rexB of bacteriophage λ is an anti-cell death gene , 1998 .

[24]  I. Chopra,et al.  Joint Tolerance to β-Lactam and Fluoroquinolone Antibiotics in Escherichia coli Results from Overexpression of hipA , 1998, Antimicrobial Agents and Chemotherapy.

[25]  A. Grossman,et al.  Cell cycle and sporulation in Bacillus subtilis. , 1998, Current opinion in microbiology.

[26]  H. Horvitz,et al.  Genetics of programmed cell death in C. elegans: past, present and future. , 1998, Trends in genetics : TIG.

[27]  E. Charpentier,et al.  Penicillin tolerance genes of Streptococcus pneumoniae: the ABC‐type manganese permease complex Psa , 1998, Molecular microbiology.

[28]  F. Durrieu,et al.  Apparent caspase independence of programmed cell death in Dictyostelium , 1998, Current Biology.

[29]  K. Gerdes,et al.  The Escherichia coli relBE genes belong to a new toxin–antitoxin gene family , 1998, Molecular microbiology.

[30]  K. Lewis,et al.  Pathogen resistance as the origin of kin altruism. , 1998, Journal of theoretical biology.

[31]  K. Bayles,et al.  Opposing Roles of the Staphylococcus aureus Virulence Regulators, Agr and Sar, in Triton X-100- and Penicillin-Induced Autolysis , 1998, Journal of bacteriology.

[32]  K. Kristiansen,et al.  STAUROSPORINE‐INDUCED CELL DEATH IN TETRAHYMENA THERMOPHILA HAS MIXED CHARACTERISTICS OF BOTH APOPTOTIC AND AUTOPHAGIC DEGENERATION , 1998, Cell biology international.

[33]  J. Claverys,et al.  Development of competence in Streptococcus pneumoniae: pheromone autoinduction and control of quorum sensing by the oligopeptide permease , 1998, Molecular microbiology.

[34]  J. Struthers,et al.  The growth of Gardnerella vaginalis and Lactobacillus acidophilus in Sorbarod biofilms. , 1998, Journal of medical microbiology.

[35]  J. Costerton,et al.  The involvement of cell-to-cell signals in the development of a bacterial biofilm. , 1998, Science.

[36]  E. Greenberg,et al.  Self perception in bacteria: quorum sensing with acylated homoserine lactones. , 1998, Current opinion in microbiology.

[37]  D A Sinclair,et al.  Molecular mechanisms of yeast aging. , 1998, Trends in biochemical sciences.

[38]  B. Ames,et al.  The free radical theory of aging matures. , 1998, Physiological reviews.

[39]  S. Levy,et al.  The challenge of antibiotic resistance. , 1998, Scientific American.

[40]  J. Claverys,et al.  Competence‐specific induction of recA is required for full recombination proficiency during transformation in Streptococcus pneumoniae , 1998, Molecular microbiology.

[41]  T. Beveridge,et al.  Natural release of virulence factors in membrane vesicles by Pseudomonas aeruginosa and the effect of aminoglycoside antibiotics on their release. , 1997, The Journal of antimicrobial chemotherapy.

[42]  P. Ambroise‐Thomas,et al.  Apoptosis related to chloroquine sensitivity of the human malaria parasite Plasmodium falciparum. , 1997, Transactions of the Royal Society of Tropical Medicine and Hygiene.

[43]  L. Ellerby,et al.  Human Bcl-2 Reverses Survival Defects in Yeast Lacking Superoxide Dismutase and Delays Death of Wild-Type Yeast , 1997, The Journal of cell biology.

[44]  R. Lenski,et al.  Evolution of high mutation rates in experimental populations of E. coli , 1997, Nature.

[45]  G. Evan,et al.  Human Bak induces cell death in Schizosaccharomyces pombe with morphological changes similar to those with apoptosis in mammalian cells , 1997, Molecular and cellular biology.

[46]  A. Fraser,et al.  CED-4 induces chromatin condensation in Schizosaccharomyces pombe and is inhibited by direct physical association with CED-9 , 1997, Current Biology.

[47]  B. Iglewski,et al.  The chain of command in Pseudomonas quorum sensing. , 1997, Trends in microbiology.

[48]  J. Miller,et al.  Proliferation of mutators in A cell population , 1997, Journal of bacteriology.

[49]  P. Stewart,et al.  Theoretical aspects of antibiotic diffusion into microbial biofilms , 1996, Antimicrobial agents and chemotherapy.

[50]  M. Winkler,et al.  Transcription of the mutL repair, miaA tRNA modification, hfq pleiotropic regulator, and hflA region protease genes of Escherichia coli K-12 from clustered Esigma32-specific promoters during heat shock , 1996, Journal of bacteriology.

[51]  J. Wells,et al.  Why do many ruminal bacteria die and lyse so quickly? , 1996, Journal of dairy science.

[52]  H. Engelberg-Kulka,et al.  An Escherichia coli chromosomal "addiction module" regulated by guanosine [corrected] 3',5'-bispyrophosphate: a model for programmed bacterial cell death. , 1996, Proceedings of the National Academy of Sciences of the United States of America.

[53]  S. Levy,et al.  Multiple antibiotic resistance (mar) locus protects Escherichia coli from rapid cell killing by fluoroquinolones , 1996, Antimicrobial agents and chemotherapy.

[54]  W. Greenhalf,et al.  Role of mitochondria and C‐terminal membrane anchor of Bcl‐2 in Bax induced growth arrest and mortality in Saccharomyces cerevisiae , 1996, FEBS letters.

[55]  H. Nikaido,et al.  AcrAB efflux pump plays a major role in the antibiotic resistance phenotype of Escherichia coli multiple-antibiotic-resistance (Mar) mutants , 1996, Journal of bacteriology.

[56]  E. Ishiguro,et al.  Direct correlation between overproduction of guanosine 3',5'-bispyrophosphate (ppGpp) and penicillin tolerance in Escherichia coli , 1995, Journal of bacteriology.

[57]  S. Foster,et al.  Characterization of the involvement of two compensatory autolysins in mother cell lysis during sporulation of Bacillus subtilis 168 , 1995, Journal of bacteriology.

[58]  John Calvin Reed,et al.  Structure-Function Analysis of Bcl-2 Protein , 1995, The Journal of Biological Chemistry.

[59]  D. Toal,et al.  Branched‐chain fatty acids: the case for a novel form of cell‐cell signalling during Myxococcus xanthus development , 1995, Molecular microbiology.

[60]  L. Snyder Phage‐exclusion enzymes: a bonanza of biochemical and cell biology reagents? , 1995, Molecular microbiology.

[61]  J. Davoust,et al.  Programmed cell death in Dictyostelium. , 1994, Journal of cell science.

[62]  John Calvin Reed,et al.  Interactions among members of the Bcl-2 protein family analyzed with a yeast two-hybrid system , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[63]  D. Musher,et al.  Vancomycin penetration into biofilm covering infected prostheses and effect on bacteria. , 1994, The Journal of infectious diseases.

[64]  B. Irwin,et al.  Autoregulation of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis , 1994, Journal of bacteriology.

[65]  Boris Martinac,et al.  A large-conductance mechanosensitive channel in E. coli encoded by mscL alone , 1994, Nature.

[66]  S. J. Knott,et al.  Effect of antibiotics on non-growing planktonic cells and biofilms of Escherichia coli. , 1994, The Journal of antimicrobial chemotherapy.

[67]  L. Snyder,et al.  Translation elongation factor Tu cleaved by a phage-exclusion system. , 1994, Proceedings of the National Academy of Sciences of the United States of America.

[68]  E. Ohtsubo,et al.  chpA and chpB, Escherichia coli chromosomal homologs of the pem locus responsible for stable maintenance of plasmid R100 , 1993, Journal of bacteriology.

[69]  D A Siegele,et al.  Microbial competition: Escherichia coli mutants that take over stationary phase cultures. , 1993, Science.

[70]  C. Allis,et al.  Programmed nuclear death: apoptotic-like degradation of specific nuclei in conjugating Tetrahymena. , 1992, Developmental biology.

[71]  R. N. Walters,et al.  Bactericidal activities of five quinolones for Escherichia coli strains with mutations in genes encoding the SOS response or cell division , 1992, Antimicrobial Agents and Chemotherapy.

[72]  M. Dworkin,et al.  Effects of glucosamine on lysis, glycerol formation, and sporulation in Myxococcus xanthus , 1991, Journal of bacteriology.

[73]  M. Mardis,et al.  Structure and organization of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis , 1991, Journal of bacteriology.

[74]  S. Vincent,et al.  Lytic effect of two fluoroquinolones, ofloxacin and pefloxacin, on Escherichia coli W7 and its consequences on peptidoglycan composition , 1991, Antimicrobial Agents and Chemotherapy.

[75]  K. Young,et al.  Lysis of Escherichia coli by beta-lactams which bind penicillin-binding proteins 1a and 1b: inhibition by heat shock proteins , 1991, Journal of bacteriology.

[76]  H. Berg,et al.  Complex patterns formed by motile cells of Escherichia coli , 1991, Nature.

[77]  R. Kolter,et al.  surA, an Escherichia coli gene essential for survival in stationary phase , 1990, Journal of bacteriology.

[78]  E. Rosenberg,et al.  Role of autocide AMI in development of Myxococcus xanthus , 1990, Journal of bacteriology.

[79]  J. Costerton,et al.  The biofilm glycocalyx as a resistance factor. , 1990, The Journal of antimicrobial chemotherapy.

[80]  L. Snyder,et al.  A site in the T4 bacteriophage major head protein gene that can promote the inhibition of all translation in Escherichia coli. , 1990, Journal of molecular biology.

[81]  L. Ferreira,et al.  Control of the activity of the soluble lytic transglycosylase by the stringent response in Escherichia coli. , 1990, FEMS microbiology letters.

[82]  F. Champlin,et al.  Adaptive resistance to aminoglycoside antibiotics in Pseudomonas aeruginosa. , 1989, Journal of medical microbiology.

[83]  H L Walmsley,et al.  The penetration of antibiotics into aggregates of mucoid and non-mucoid Pseudomonas aeruginosa. , 1989, Journal of general microbiology.

[84]  H. Moyed,et al.  Conditional impairment of cell division and altered lethality in hipA mutants of Escherichia coli K-12 , 1988, Journal of bacteriology.

[85]  H. Moyed,et al.  Molecular cloning and expression of hipA, a gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis , 1986, Journal of bacteriology.

[86]  T. Ogura,et al.  F plasmid ccd mechanism in Escherichia coli , 1986, Journal of bacteriology.

[87]  H. Moyed,et al.  hipA, a newly recognized gene of Escherichia coli K-12 that affects frequency of persistence after inhibition of murein synthesis , 1983, Journal of bacteriology.

[88]  L. Jolliffe,et al.  The energized membrane and cellular autolysis in Bacillus subtilis , 1981, Cell.

[89]  A. Tomasz,et al.  Mechanism of action of penicillin: triggering of the pneumococcal autolytic enzyme by inhibitors of cell wall synthesis. , 1975, Proceedings of the National Academy of Sciences of the United States of America.

[90]  A. Tomasz,et al.  Multiple Antibiotic Resistance in a Bacterium with Suppressed Autolytic System , 1970, Nature.

[91]  S. Luria,et al.  Ultraviolet Irradiation of Bacteriophage During Intracellular Growth , 1947, Journal of bacteriology.

[92]  J. Bigger TREATMENT OF STAPHYLOCOCCAL INFECTIONS WITH PENICILLIN BY INTERMITTENT STERILISATION , 1944 .

[93]  S. Jazwinski Molecular mechanisms of yeast longevity. , 1999, Trends in microbiology.

[94]  P. Watnick,et al.  Genetic approaches to study of biofilms. , 1999, Methods in enzymology.

[95]  H. Engelberg-Kulka,et al.  Addiction modules and programmed cell death and antideath in bacterial cultures. , 1999, Annual review of microbiology.

[96]  M. Lutter,et al.  Biochemical pathways of caspase activation during apoptosis. , 1999, Annual review of cell and developmental biology.

[97]  H. Engelberg-Kulka,et al.  rexB of bacteriophage lambda is an anti-cell death gene. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[98]  L. Guarente,et al.  Aging in Saccharomyces cerevisiae. , 1998, Annual review of microbiology.

[99]  R. Losick,et al.  Molecular genetics of sporulation in Bacillus subtilis. , 1996, Annual review of genetics.

[100]  O. Massidda,et al.  Bacterial walls, peptidoglycan hydrolases, autolysins, and autolysis. , 1996, Microbial drug resistance.

[101]  M. Cashel,et al.  The stringent response , 1996 .

[102]  J. Bion,et al.  Antibiotic-induced release of endotoxin from bacteria in vitro. , 1994, Journal of medical microbiology.

[103]  E. O. Budrene [Formation of space-ordered structures in colonies of motile bacteria on agar]. , 1985, Doklady Akademii nauk SSSR.

[104]  N. T. Gridgeman,et al.  A kinetic analysis of spontaneous rho- mutations in yeast. , 1975, Mutation research.

[105]  N. T. Gridgeman,et al.  A kinetic analysis of spontaneous ρ− mutations in yeast , 1975 .