Deep Learning Based Supervised Semantic Segmentation of Electron Cryo-Subtomograms
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Eric P. Xing | Chang Liu | Min Xu | Xiaodan Liang | Xiangrui Zeng | Ruogu Lin | Zachary Freyberg | E. Xing | Min Xu | Xiaodan Liang | Z. Freyberg | Chang Liu | Xiangrui Zeng | Ruogu Lin
[1] J. Frank,et al. Signal-to-noise ratio of electron micrographs obtained by cross correlation , 1975, Nature.
[2] T. Bhat,et al. The Protein Data Bank and the challenge of structural genomics , 2000, Nature Structural Biology.
[3] W. Baumeister,et al. Prospects of electron cryotomography to visualize macromolecular complexes inside cellular compartments: implications of crowding. , 2002, Biophysical chemistry.
[4] G Sapiro,et al. Classification and 3D averaging with missing wedge correction in biological electron tomography. , 2008, Journal of structural biology.
[5] R. Aebersold,et al. Visual proteomics of the human pathogen Leptospira interrogans , 2009, Nature Methods.
[6] M. Valle,et al. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. , 2009, Structure.
[7] G. Jensen,et al. Electron tomography of cells , 2011, Quarterly Reviews of Biophysics.
[8] Frank Alber,et al. High-throughput subtomogram alignment and classification by Fourier space constrained fast volumetric matching. , 2012, Journal of structural biology.
[9] V. Lučić,et al. Cryo-electron tomography: The challenge of doing structural biology in situ , 2013, The Journal of cell biology.
[10] J. Briggs. Structural biology in situ--the potential of subtomogram averaging. , 2013, Current opinion in structural biology.
[11] Min Xu,et al. Automated target segmentation and real space fast alignment methods for high-throughput classification and averaging of crowded cryo-electron subtomograms , 2013, Bioinform..
[12] Yuxiang Chen,et al. Autofocused 3D classification of cryoelectron subtomograms. , 2014, Structure.
[13] Peijun Zhang,et al. Correlative Fluorescence and Electron Microscopy , 2014, Current protocols in cytometry.
[14] Trevor Darrell,et al. Fully convolutional networks for semantic segmentation , 2015, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).
[15] Andrew Zisserman,et al. Very Deep Convolutional Networks for Large-Scale Image Recognition , 2014, ICLR.
[16] Y. Sugita,et al. Biomolecular interactions modulate macromolecular structure and dynamics in atomistic model of a bacterial cytoplasm , 2016, eLife.
[17] Yuan Yu,et al. TensorFlow: A system for large-scale machine learning , 2016, OSDI.
[18] Min Xu,et al. Simulating cryo electron tomograms of crowded cell cytoplasm for assessment of automated particle picking , 2016, BMC Bioinformatics.
[19] Min Xu,et al. De Novo Structural Pattern Mining in Cellular Electron Cryotomograms. , 2015, Structure.
[20] Roberto Cipolla,et al. SegNet: A Deep Convolutional Encoder-Decoder Architecture for Image Segmentation , 2015, IEEE Transactions on Pattern Analysis and Machine Intelligence.
[21] Wei Dai,et al. Convolutional Neural Networks for Automated Annotation of Cellular Cryo-Electron Tomograms , 2017, Nature Methods.
[22] Karim Elmaaroufi,et al. Improved deep learning-based macromolecules structure classification from electron cryo-tomograms , 2017, Machine Vision and Applications.
[23] Min Xu,et al. A convolutional autoencoder approach for mining features in cellular electron cryo-tomograms and weakly supervised coarse segmentation , 2017, Journal of structural biology.
[24] Min Xu,et al. De Novo Structural Pattern Mining in Cellular Electron Cryotomograms. , 2019, Structure.