Structural studies of “aggregation‐prone” peptide‐analogues of teleostean egg chorion ZPB proteins

Egg envelopes of vertebrates are composed of a family of proteins called zona pellucida (ZP) proteins, which are distinguished by the presence of a common structural polymerizing motif, known as ZP domain. Teleostean fish chorion is a fibrous structure, consisting of protein members of the ZPB/ZP1 and the ZPC/ZP3 families, which are incorporated as tandemly repeating heterodimers inside chorion fibers. Computational analysis of multiple ZPB/ZP1 proteins from several teleostean species, reveals two potential “aggregation‐prone” sequence segments, forming a specific polymerization interface (AG interface). These two peptides were synthesized and results are presented in this work from transmission electron microscopy, Congo red staining, X‐ray fiber diffraction and ATR FT‐IR, which clearly display the ability of these peptides to self‐aggregate, forming amyloid‐like fibrils. This, most probably implies that the AG interface of ZPB/ZP1 proteins plays an important role for the formation of the repeating ZPB‐ZPC heterodimers, which constitute teleostean chorion fibrils. © 2014 Wiley Periodicals, Inc. Biopolymers (Pept Sci) 102: 427–436, 2014.

[1]  Atanas V Koulov,et al.  Functional amyloid--from bacteria to humans. , 2007, Trends in biochemical sciences.

[2]  James C Sacchettini,et al.  Structural insight into pH-induced conformational changes within the native human transthyretin tetramer. , 2008, Journal of molecular biology.

[3]  S. Hamodrakas,et al.  The silkmoth eggshell as a natural amyloid shield for the safe development of insect oocyte and embryo: Insights from studies of silkmoth chorion protein peptide‐analogues of the B famil , 2011, Biopolymers.

[4]  C. Sander,et al.  A large domain common to sperm receptors (Zp2 and Zp3) and TGF‐β type III receptor , 1992 .

[5]  T. Sasaki,et al.  Cloning of cDNAs for the precursor protein of a low-molecular-weight subunit of the inner layer of the egg envelope (chorion) of the fish Oryzias latipes. , 1995, Developmental biology.

[6]  H. Mantsch,et al.  The use and misuse of FTIR spectroscopy in the determination of protein structure. , 1995, Critical reviews in biochemistry and molecular biology.

[7]  L. Jovine,et al.  Tracking Down the ZP Domain: From the Mammalian Zona Pellucida to the Molluscan Vitelline Envelope , 2006, Seminars in reproductive medicine.

[8]  M. Fändrich On the structural definition of amyloid fibrils and other polypeptide aggregates , 2007, Cellular and Molecular Life Sciences.

[9]  L. Lefièvre,et al.  Cracking the egg: increased complexity in the zona pellucida. , 2005, Human reproduction.

[10]  C. Dobson Protein folding and misfolding , 2003, Nature.

[11]  C. Dobson Protein misfolding, evolution and disease. , 1999, Trends in biochemical sciences.

[12]  David Eisenberg,et al.  Identifying the amylome, proteins capable of forming amyloid-like fibrils , 2010, Proceedings of the National Academy of Sciences.

[13]  R J Read,et al.  Crystallography & NMR system: A new software suite for macromolecular structure determination. , 1998, Acta crystallographica. Section D, Biological crystallography.

[14]  Pawel Sikorski,et al.  The common architecture of cross-beta amyloid. , 2010, Journal of molecular biology.

[15]  C. Haux,et al.  Eggshell zona radiata-proteins from cod (Gadus morhua): extra-ovarian origin and induction by estradiol-17 beta. , 1992, The International journal of developmental biology.

[16]  J. Gerrard,et al.  Protein β-interfaces as a generic source of native peptide tectons. , 2013, Chemical communications.

[17]  Collaborative Computational,et al.  The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.

[18]  E. Boja,et al.  Structural Characterization of Native Mouse Zona Pellucida Proteins Using Mass Spectrometry* , 2003, Journal of Biological Chemistry.

[19]  C. Blake,et al.  The structure of amyloid fibrils by electron microscopy and X-ray diffraction. , 1997, Advances in protein chemistry.

[20]  W N Hunter,et al.  Structure of trypanothione reductase from Crithidia fasciculata at 2.6 A resolution; enzyme-NADP interactions at 2.8 A resolution. , 1994, Acta crystallographica. Section D, Biological crystallography.

[21]  J. Carpenter,et al.  Survival of water stress in annual fish embryos: dehydration avoidance and egg envelope amyloid fibers. , 2001, American journal of physiology. Regulatory, integrative and comparative physiology.

[22]  P. Wassarman,et al.  Egg extracellular coat proteins: from fish to mammals. , 2007, Histology and histopathology.

[23]  L. Jovine,et al.  Insights into Egg Coat Assembly and Egg-Sperm Interaction from the X-Ray Structure of Full-Length ZP3 , 2010, Cell.

[24]  J. Thompson,et al.  CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. , 1994, Nucleic acids research.

[25]  J. Bandekar,et al.  Vibrational spectroscopy and conformation of peptides, polypeptides, and proteins. , 1986, Advances in protein chemistry.

[26]  W. L. Jorgensen,et al.  The OPLS [optimized potentials for liquid simulations] potential functions for proteins, energy minimizations for crystals of cyclic peptides and crambin. , 1988, Journal of the American Chemical Society.

[27]  E. Atkins,et al.  “Cross-β” conformation in proteins☆ , 1968 .

[28]  Glyn L. Devlin,et al.  Functionalised amyloid fibrils for roles in cell adhesion. , 2008, Biomaterials.

[29]  G. Vriend,et al.  Amyloids protect the silkmoth oocyte and embryo , 2000, FEBS letters.

[30]  L. Jovine,et al.  A Structural View of Egg Coat Architecture and Function in Fertilization1 , 2011, Biology of reproduction.

[31]  S. J. Conner,et al.  Analysis of fish ZP1/ZPB homologous genes--evidence for both genome duplication and species-specific amplification models of evolution. , 2003, Reproduction.

[32]  Markus J Buehler,et al.  Nanomechanics of functional and pathological amyloid materials. , 2011, Nature nanotechnology.

[33]  A. Arukwe,et al.  Salmon Eggshell Protein Expression: A Marker for Environmental Estrogens , 1999, Marine Biotechnology.

[34]  C. E. Lyons,et al.  Expression and structural analysis of a teleost homolog of a mammalian zona pellucida gene. , 1993, The Journal of biological chemistry.

[35]  C. Haux,et al.  Oestradiol-17 beta induces the major vitelline envelope proteins in both sexes in teleosts. , 1991, The Journal of endocrinology.

[36]  T. Blundell,et al.  Comparative protein modelling by satisfaction of spatial restraints. , 1993, Journal of molecular biology.

[37]  Alexandre M J J Bonvin,et al.  HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets , 2007, Proteins.

[38]  C. Dobson,et al.  Protein misfolding, functional amyloid, and human disease. , 2006, Annual review of biochemistry.

[39]  A. Neville,et al.  Helicoidal architecture of fish eggshell. , 1981, Tissue & cell.

[40]  Alexandre M J J Bonvin,et al.  Solvated protein–protein docking using Kyte‐Doolittle‐based water preferences , 2013, Proteins.

[41]  A. Mitraki Protein aggregation from inclusion bodies to amyloid and biomaterials. , 2010, Advances in protein chemistry and structural biology.

[42]  J. Richardson,et al.  Natural β-sheet proteins use negative design to avoid edge-to-edge aggregation , 2002, Proceedings of the National Academy of Sciences of the United States of America.

[43]  P. Wassarman,et al.  Mouse egg extracellular coat is a matrix of interconnected filaments possessing a structural repeat. , 1985, Journal of molecular biology.

[44]  P. Wassarman,et al.  Structure and function of the zona pellucida: identification and characterization of the proteins of the mouse oocyte's zona pellucida. , 1980, Developmental biology.

[45]  H. Mantsch,et al.  Determination of protein secondary structure by Fourier transform infrared spectroscopy: a critical assessment. , 1993, Biochemistry.

[46]  J. V. Helvik,et al.  The major structural proteins of cod (Gadus morhua) eggshells and protein crosslinking during teleost egg hardening. , 1990, Developmental biology.

[47]  Ehud Gazit,et al.  Amyloids: not only pathological agents but also ordered nanomaterials. , 2008, Angewandte Chemie.

[48]  S. Yasumasu,et al.  The third egg envelope subunit in fish: cDNA cloning and analysis, and gene expression , 1998, Development, growth & differentiation.

[49]  F. Huang,et al.  Molecular cloning, structural analysis, and expression of carp ZP3 gene , 1996, Molecular reproduction and development.

[50]  Marc A. Martí-Renom,et al.  Tools for comparative protein structure modeling and analysis , 2003, Nucleic Acids Res..

[51]  Stavros J Hamodrakas,et al.  Natural protective amyloids. , 2008, Current protein & peptide science.

[52]  Alexandre M. J. J. Bonvin,et al.  Solvated docking: introducing water into the modelling of biomolecular complexes , 2006, Bioinform..

[53]  Sofia Burendahl,et al.  Crystal structure of the ZP-N domain of ZP3 reveals the core fold of animal egg coats , 2008, Nature.

[54]  R. Hope,et al.  Evolution and Nomenclature of the Zona Pellucida Gene Family , 2003, Biology of reproduction.

[55]  S. Sen,et al.  Nanomaterials: amyloids reflect their brighter side , 2011, Nano reviews.

[56]  G. Romhányi Selective differentiation between amyloid and connective tissue structures based on the collagen specific topo-optical staining reaction with Congo red , 2004, Virchows Archiv A.

[57]  Costel C. Darie,et al.  Zona pellucida domain proteins. , 2005, Annual review of biochemistry.

[58]  A. Savitzky,et al.  Smoothing and Differentiation of Data by Simplified Least Squares Procedures. , 1964 .

[59]  Stavros J. Hamodrakas,et al.  Structural Analysis of Peptide-Analogues of Human Zona Pellucida ZP1 Protein with Amyloidogenic Properties: Insights into Mammalian Zona Pellucida Formation , 2013, PloS one.

[60]  P. Wassarman,et al.  The PLAC1-homology region of the ZP domain is sufficient for protein polymerisation , 2006, BMC Biochemistry.

[61]  S. Yasumasu,et al.  Cloning of cDNA and estrogen-induced hepatic gene expression for choriogenin H, a precursor protein of the fish egg envelope (chorion). , 1997, Proceedings of the National Academy of Sciences of the United States of America.

[62]  P. Wassarman,et al.  A duplicated motif controls assembly of zona pellucida domain proteins. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[63]  J. Kelly,et al.  Amyloid as a natural product , 2003, The Journal of cell biology.

[64]  P. Wassarman,et al.  Structure of the mouse egg extracellular coat, the zona pellucida. , 1991, International review of cytology.

[65]  E. Boja,et al.  Structural conservation of mouse and rat zona pellucida glycoproteins. Probing the native rat zona pellucida proteome by mass spectrometry. , 2005, Biochemistry.

[66]  G. Vriend,et al.  Amyloid‐like fibrils from an 18‐residue peptide analogue of a part of the central domain of the B‐family of silkmoth chorion proteins , 2001, FEBS letters.

[67]  F. Cotelli,et al.  Identification and characterization of the major components of the Oncorhynchus mykiss Egg Chorion , 1991, Molecular reproduction and development.

[68]  P. Olsson,et al.  Cloning of Rainbow Trout Egg Envelope Proteins: Members of a Unique Group of Structural Proteins1 , 2001, Biology of reproduction.

[69]  P. Wassarman,et al.  Fertilization in mammals. , 1988, Scientific American.

[70]  S. S. Malhotra,et al.  Mammalian zona pellucida glycoproteins: structure and function during fertilization , 2012, Cell and Tissue Research.

[71]  J. Dean,et al.  ZP2 and ZP3 cytoplasmic tails prevent premature interactions and ensure incorporation into the zona pellucida , 2011, Journal of Cell Science.

[72]  Stavros J. Hamodrakas,et al.  A Consensus Method for the Prediction of ‘Aggregation-Prone’ Peptides in Globular Proteins , 2013, PloS one.

[73]  C. Maury The emerging concept of functional amyloid , 2009, Journal of internal medicine.