Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control
暂无分享,去创建一个
J. Schmutz | E. Lindquist | R. Hamelin | I. Grigoriev | A. Aerts | H. Shapiro | A. Farmer | B. Dhillon | G. Kema | P. D. de Wit | S. B. Goodwin | R. Dietrich | R. Mehrabi | T. A. van der Lee | T. Lee | L. Zwiers | I. de Vries | J. Carlier | I. Stergiopoulos | G. Scalliet | M. Zapater | C. Crane | Stephen | I. D. Vries | Wit | M. Guzmán | S. Garcia | Rafael E Arango Isaza | M. Souza | R. A. Isaza | O. Quirós | T. D. Jong | Caucasella Diaz-Trujillo | Tristan V de Jong | Claudia Fortes Fereira | Elizabeth Reynolds | Claudia Fortes Fereira | RahimMehrabi | Pierre J. G. M. De | B. Goodwin | Braham Dhillon | E. Reynolds
[1] B. Henrissat,et al. Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen , 2015, Proceedings of the National Academy of Sciences.
[2] R. Hamelin,et al. The landscape of transposable elements in the finished genome of the fungal wheat pathogen Mycosphaerella graminicola , 2014, BMC Genomics.
[3] V. Barbe,et al. Transposable element-assisted evolution and adaptation to host plant within the Leptosphaeria maculans-Leptosphaeria biglobosa species complex of fungal pathogens , 2014, BMC Genomics.
[4] S. Soubeyrand,et al. Long-Distance Wind-Dispersal of Spores in a Fungal Plant Pathogen: Estimation of Anisotropic Dispersal Kernels from an Extensive Field Experiment , 2014, PloS one.
[5] G. Kema,et al. Positive selection and intragenic recombination contribute to high allelic diversity in effector genes of Mycosphaerella fijiensis, causal agent of the black leaf streak disease of banana. , 2014, Molecular plant pathology.
[6] Koichiro Tamura,et al. MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. , 2013, Molecular biology and evolution.
[7] Inna Dubchak,et al. MycoCosm portal: gearing up for 1000 fungal genomes , 2013, Nucleic Acids Res..
[8] B. Thomma,et al. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen , 2013, Genome research.
[9] T. Lenormand,et al. Using neutral cline decay to estimate contemporary dispersal: a generic tool and its application to a major crop pathogen , 2013, Ecology letters.
[10] Gordon Gremme,et al. GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations , 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.
[11] Wendy S. Schackwitz,et al. Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens , 2013, PLoS genetics.
[12] James K. Hane,et al. Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence , 2013, G3: Genes | Genomes | Genetics.
[13] G. D. da Silva,et al. Abundance, distribution and potential impact of transposable elements in the genome of Mycosphaerella fijiensis , 2012, BMC Genomics.
[14] A. Salamov,et al. Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi , 2012, PLoS pathogens.
[15] A. Salamov,et al. The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry , 2012, PLoS genetics.
[16] A. Rieux,et al. Recent range expansion and agricultural landscape heterogeneity have only minimal effect on the spatial genetic structure of the plant pathogenic fungus Mycosphaerella fijiensis , 2012, Heredity.
[17] G. Tuskan,et al. Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor , 2012, PloS one.
[18] Saravanaraj N. Ayyampalayam,et al. The banana (Musa acuminata) genome and the evolution of monocotyledonous plants , 2012, Nature.
[19] J. M. Torres,et al. Differential induction of pathogenesis-related proteins in banana in response to Mycosphaerella fijiensis infection , 2012, European Journal of Plant Pathology.
[20] M. Freitag,et al. Epigenetics of Filamentous Fungi , 2012 .
[21] M. Hood,et al. Patterns of Repeat-Induced Point Mutation in Transposable Elements of Basidiomycete Fungi , 2012, Genome biology and evolution.
[22] Paramvir S. Dehal,et al. Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis , 2011, PLoS genetics.
[23] Christina A. Cuomo,et al. Obligate biotrophy features unraveled by the genomic analysis of rust fungi , 2011, Proceedings of the National Academy of Sciences.
[24] A. Churchill. Mycosphaerella fijiensis, the black leaf streak pathogen of banana: progress towards understanding pathogen biology and detection, disease development, and the challenges of control. , 2011, Molecular plant pathology.
[25] Christina A. Cuomo,et al. Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici , 2011 .
[26] Manoel T. Souza,et al. Genome-wide BAC-end sequencing of Musa acuminata DH Pahang reveals further insights into the genome organization of banana , 2011, Tree Genetics & Genomes.
[27] Jean,et al. Effector diversification within compartments of the Leptosphaeria maculans genome affected by Repeat-Induced Point mutations , 2011, Nature communications.
[28] V. Bus,et al. Venturia inaequalis: the causal agent of apple scab. , 2011, Molecular plant pathology.
[29] Pari Skamnioti,et al. Genome Expansion and Gene Loss in Powdery Mildew Fungi Reveal Tradeoffs in Extreme Parasitism , 2010, Science.
[30] M. Schierup,et al. Whole-Genome and Chromosome Evolution Associated with Host Adaptation and Speciation of the Wheat Pathogen Mycosphaerella graminicola , 2010, PLoS genetics.
[31] James K. Hane,et al. A first genome assembly of the barley fungal pathogen Pyrenophora teres f. teres , 2010, Genome Biology.
[32] B. te Lintel Hekkert,et al. Variable number of tandem repeat markers in the genome sequence of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana (Musa spp). , 2010, Genetics and molecular research : GMR.
[33] J. Carlier,et al. Black Leaf Streak Disease is challenging the banana industry , 2010 .
[34] J. Carlier,et al. Genetic discontinuities and disequilibria in recently established populations of the plant pathogenic fungus Mycosphaerella fijiensis , 2010, Molecular ecology.
[35] Vincent Lombard,et al. Genome sequence of the model mushroom Schizophyllum commune , 2010, Nature Biotechnology.
[36] S. Schornack,et al. Recent developments in effector biology of filamentous plant pathogens , 2010, Cellular microbiology.
[37] G. Kema,et al. Tomato Cf resistance proteins mediate recognition of cognate homologous effectors from fungi pathogenic on dicots and monocots , 2010, Proceedings of the National Academy of Sciences.
[38] P. D. de Wit,et al. Fungal effector proteins: past, present and future. , 2009, Molecular plant pathology.
[39] S. Kurtz,et al. Fine-grained annotation and classification of de novo predicted LTR retrotransposons , 2009, Nucleic acids research.
[40] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[41] Nansheng Chen,et al. Using OrthoCluster for the Detection of Synteny Blocks Among Multiple Genomes , 2009, Current protocols in bioinformatics.
[42] Richard G. F. Visser,et al. Meiosis Drives Extraordinary Genome Plasticity in the Haploid Fungal Plant Pathogen Mycosphaerella graminicola , 2009, PloS one.
[43] James K. Hane,et al. RIPCAL: a tool for alignment-based analysis of repeat-induced point mutations in fungal genomic sequences , 2008, BMC Bioinformatics.
[44] L. Pignolet,et al. Artificial inoculation on plants and banana leaf pieces with Mycosphaerella spp., responsible for Sigatoka leaf spot diseases , 2008 .
[45] L. Jost. GST and its relatives do not measure differentiation , 2008, Molecular ecology.
[46] J. Simpson,et al. Construction of a genetic linkage map of the fungal pathogen of banana Mycosphaerella fijiensis, causal agent of black leaf streak disease , 2008, Current Genetics.
[47] P. Crous,et al. Multiple gene genealogies and phenotypic characters differentiate several novel species of Mycosphaerella and related anamorphs on banana , 2008, Persoonia.
[48] Stefan Kurtz,et al. LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposons , 2008, BMC Bioinformatics.
[49] Yoshihiro Yamanishi,et al. KEGG for linking genomes to life and the environment , 2007, Nucleic Acids Res..
[50] J. Bennetzen,et al. A unified classification system for eukaryotic transposable elements , 2007, Nature Reviews Genetics.
[51] S. B. Goodwin. Back to basics and beyond: increasing the level of resistance to Septoria tritici blotch in wheat , 2007, Australasian Plant Pathology.
[52] G. Kema,et al. Electrophoretic and cytological karyotyping of the foliar wheat pathogen Mycosphaerella graminicola reveals many chromosomes with a large size range. , 2007, Mycologia.
[53] James K. Hane,et al. Dothideomycete–Plant Interactions Illuminated by Genome Sequencing and EST Analysis of the Wheat Pathogen Stagonospora nodorum[W][OA] , 2007, The Plant Cell Online.
[54] Rodrigo Lopez,et al. Clustal W and Clustal X version 2.0 , 2007, Bioinform..
[55] M. Shaw,et al. Dynamics of QoI Sensitivity in Mycosphaerella fijiensis in Costa Rica During 2000 to 2003. , 2007, Phytopathology.
[56] B. Thomma,et al. The chitin-binding Cladosporium fulvum effector protein Avr4 is a virulence factor. , 2007, Molecular plant-microbe interactions : MPMI.
[57] Beat Keller,et al. Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families. , 2007, Genome research.
[58] R. ElkinBustamante,et al. Efecto de Sustratos Foliares Sobre la Sigatoka Negra (Mycosphaerella fijiensis Morelet) en Banano (Musa × paradisiacaL.) y Plátano (Musa acuminata Colla) , 2007 .
[59] Hua Ling,et al. Emergence of a new disease as a result of interspecific virulence gene transfer , 2006, Nature Genetics.
[60] B. Canto-Canché,et al. Variation in electrophoretic karyotype among Mexican isolates of Mycosphaerella fijiensis , 2006 .
[61] P. Smouse,et al. genalex 6: genetic analysis in Excel. Population genetic software for teaching and research , 2006 .
[62] J. Jurka,et al. Repbase Update, a database of eukaryotic repetitive elements , 2005, Cytogenetic and Genome Research.
[63] Jonathan D. G. Jones,et al. Cladosporium Avr2 Inhibits Tomato Rcr3 Protease Required for Cf-2-Dependent Disease Resistance , 2005, Science.
[64] P. Meirmans,et al. genotype and genodive: two programs for the analysis of genetic diversity of asexual organisms , 2004 .
[65] S. Brunak,et al. Improved prediction of signal peptides: SignalP 3.0. , 2004, Journal of molecular biology.
[66] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[67] S. Salzberg,et al. Versatile and open software for comparing large genomes , 2004, Genome Biology.
[68] Jodie J. Yin,et al. A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes , 2004, Genome Biology.
[69] C. Stoeckert,et al. OrthoMCL: identification of ortholog groups for eukaryotic genomes. , 2003, Genome research.
[70] A. Krogh,et al. Reliability measures for membrane protein topology prediction algorithms. , 2003, Journal of molecular biology.
[71] M. Guzmán,et al. Black Sigatoka: An Increasing Threat to Banana Cultivation. , 2003, Plant disease.
[72] T. White,et al. Estimation of nucleotide substitution rates in Eurotiomycete fungi. , 2002, Molecular biology and evolution.
[73] H. Sierotzki,et al. Mechanisms influencing the evolution of resistance to Qo inhibitor fungicides. , 2002, Pest management science.
[74] S. Eddy,et al. Automated de novo identification of repeat sequence families in sequenced genomes. , 2002, Genome research.
[75] Anton J. Enright,et al. An efficient algorithm for large-scale detection of protein families. , 2002, Nucleic acids research.
[76] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[77] B. Howlett,et al. Leptosphaeria maculans, the causal agent of blackleg disease of Brassicas. , 2001, Fungal genetics and biology : FG & B.
[78] G. Kema,et al. Avirulence in the wheat septoria tritici leaf blotch fungus Mycosphaerella graminicola is controlled by a single locus. , 2000, Molecular plant-microbe interactions : MPMI.
[79] H. Sierotzki,et al. Mode of resistance to respiration inhibitors at the cytochrome bc1 enzyme complex of Mycosphaerella fijiensis field isolates , 2000 .
[80] F. Lapeyre,et al. Septoria Leaf Spot of Banana: A Newly Discovered Disease Caused by Mycosphaerella eumusae (Anamorph Septoria eumusae). , 2000, Phytopathology.
[81] I. Longden,et al. EMBOSS: the European Molecular Biology Open Software Suite. , 2000, Trends in genetics : TIG.
[82] Phillip SanMiguel,et al. The paleontology of intergene retrotransposons of maize , 1998, Nature Genetics.
[83] P. Green,et al. Base-calling of automated sequencer traces using phred. I. Accuracy assessment. , 1998, Genome research.
[84] P Green,et al. Base-calling of automated sequencer traces using phred. II. Error probabilities. , 1998, Genome research.
[85] B. Okole,et al. Selection ofMycosphaerella fijiensis-resistant cell lines from micro-cross sections of banana and plantain , 1997, Plant Cell Reports.
[86] G. Kema,et al. Successful crosses and molecular tetrad and progeny analyses demonstrate heterothallism in Mycosphaerella graminicola , 1996, Current Genetics.
[87] M. Lebrun,et al. Genetic structure of the global population of banana black leaf streak fungus, Mycosphaerella fijiensis , 1996 .
[88] M. Zolan. Chromosome-length polymorphism in fungi. , 1995, Microbiological reviews.
[89] H. Y. Steensma,et al. Genome comparisons in the yeastlike fungal genus Galactomyces Redhead et Malloch. , 1995, International journal of systematic bacteriology.
[90] M. Gullino,et al. Electrophoretic karyotype variation among pathotypes of Fusarium oxysporum f.sp. dianthi , 1995 .
[91] R. A. Fullerton,et al. Pathogenic variability in Mycosphaerella fijiensis Morelet, cause of black Sigatoka in banana and plantain , 1995 .
[92] R. Ortiz,et al. Inheritance of black sigatoka disease resistance in plantain-banana (Musa spp.) hybrids , 1994, Theoretical and Applied Genetics.
[93] N. Talbot,et al. Karyotypic Variation within Clonal Lineages of the Rice Blast Fungus, Magnaporthe grisea , 1993, Applied and environmental microbiology.
[94] C. Caten,et al. Variation in electrophoretic karyotype between strains of Septoria nodorum , 1991, Molecular and General Genetics MGG.
[95] M. Homma,et al. Variation in the electrophoretic karyotype analysed by the assignment of DNA probes in Candida albicans. , 1990, Journal of general microbiology.
[96] E. Cox,et al. Electrophoretic karyotype for Dictyostelium discoideum. , 1990, Proceedings of the National Academy of Sciences of the United States of America.
[97] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[98] E. Selker,et al. A natural case of RIP: degeneration of the DNA sequence in an ancestral tandem duplication , 1989, Molecular and cellular biology.
[99] C. Goyon,et al. Targeted transformation of Ascobolus immersus and de novo methylation of the resulting duplicated DNA sequences , 1989, Molecular and cellular biology.
[100] E. Selker,et al. Repeat-induced G-C to A-T mutations in Neurospora. , 1989, Science.
[101] C. Yanofsky,et al. An electrophoretic karyotype of Neurospora crassa , 1988, Molecular and cellular biology.
[102] E. Selker,et al. Rearrangement of duplicated DNA in specialized cells of Neurospora , 1987, Cell.
[103] M. Nei. Molecular Evolutionary Genetics , 1987 .
[104] P. Broda,et al. Rapid preparation of DNA from filamentous fungi , 1985 .
[105] M S Waterman,et al. Identification of common molecular subsequences. , 1981, Journal of molecular biology.
[106] R. Owen,et al. Determination of DNA base compositions from melting profiles in dilute buffers , 1969, Biopolymers.
[107] P. Doty,et al. Determination of the base composition of deoxyribonucleic acid from its thermal denaturation temperature. , 1962, Journal of molecular biology.
[108] N. Simmonds. Segregations in some diploid bananas , 1953, Journal of Genetics.
[109] Tarla Divine Nfor,et al. Evaluation of varietal response to black sigatoka caused by Mycosphaerella fijiensis Morelet in banana nursery , 2011 .
[110] P. Crous,et al. Isolation and characterization of the mating type locus of Mycosphaerella fijiensis, the causal agent of black leaf streak disease of banana. , 2007, Molecular plant pathology.
[111] D. Hollomon,et al. Fungicide Resistance In Crop Pathogens How Can It Be Managed , 2007 .
[112] S. B. Ware. Aspects of sexual reproduction in Mycosphaerella species on wheat and barley : genetic studies on specificity, mapping, and fungicide resistance , 2006 .
[113] J. Spatafora,et al. A multigene phylogeny of the Dothideomycetes using four nuclear loci. , 2006, Mycologia.
[114] BIOINFORMATICS APPLICATIONS NOTE , 2005 .
[115] Pavel A. Pevzner,et al. De novo identification of repeat families in large genomes , 2005, ISMB.
[116] P. Crous,et al. Mycosphaerella eumusae and its anamorph Pseudocercospora eumusae spp. nov. : causal agent of Eumusae leaf spot disease of banana , 2002 .
[117] Roeland E. Voorrips,et al. Software for the calculation of genetic linkage maps , 2001 .
[118] S. Brunak,et al. SHORT COMMUNICATION Identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites , 1997 .
[119] T. Sutton,et al. Sensitivity of Mycosphaerella fijiensis, Causal Agent of Black Sigatoka of Banana, to Propiconazole. , 1997, Phytopathology.
[120] O. Eriksson,et al. Supraordinal taxa of Ascomycota , 1997 .
[121] M. Shaw,et al. Histology of the pathogenesis of Mycosphaerella graminicola in wheat , 1996 .
[122] X. Mourichon,et al. Study of host-parasite interactions in susceptible and resistant banana inoculated with Cercospora fijiensis pathogen of Black Leaf Streak Disease , 1993 .
[123] Christina A. Cuomo,et al. Source (or Part of the following Source): Type Article Title Comparative Genomics Reveals Mobile Pathogenicity Chromosomes in Fusarium Author(s) , 2022 .