IMSEQ - a fast and error aware approach to immunogenetic sequence analysis
暂无分享,去创建一个
Peter N. Robinson | Knut Reinert | Jochen Hecht | Nina Babel | Avidan U. Neumann | Léon Kuchenbecker | Mikalai Nienen | K. Reinert | P. Robinson | A. Neumann | L. Kuchenbecker | N. Babel | J. Hecht | M. Nienen | Léon Kuchenbecker
[1] Eugene W. Myers,et al. A fast bit-vector algorithm for approximate string matching based on dynamic programming , 1998, JACM.
[2] Yi Shi,et al. TCRklass: A New K-String–Based Algorithm for Human and Mouse TCR Repertoire Characterization , 2015, The Journal of Immunology.
[3] Mikhail Shugay,et al. MiTCR: software for T-cell receptor sequencing data analysis , 2013, Nature Methods.
[4] Eugene W. Myers,et al. Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length , 2005, RECOMB.
[5] Stephen R. Quake,et al. Genetic measurement of memory B-cell recall using antibody repertoire sequencing , 2013, Proceedings of the National Academy of Sciences.
[6] Mark M. Davis,et al. Human responses to influenza vaccination show seroconversion signatures and convergent antibody rearrangements. , 2014, Cell host & microbe.
[7] Manuel Holtgrewe,et al. Mason – A Read Simulator for Second Generation Sequencing Data , 2010 .
[8] Eugene W. Myers,et al. Efficient q-Gram Filters for Finding All epsilon-Matches over a Given Length , 2006, J. Comput. Biol..
[9] Juliane C. Dohm,et al. Substantial biases in ultra-short read data sets from high-throughput DNA sequencing , 2008, Nucleic acids research.
[10] Marie-Paule Lefranc,et al. IMGT/V-QUEST: the highly customized and integrated system for IG and TR standardized V-J and V-D-J sequence analysis , 2008, Nucleic Acids Res..
[11] John Shawe-Taylor,et al. Decombinator: a tool for fast, efficient gene assignment in T-cell receptor sequences using a finite state machine , 2013, Bioinform..
[12] P. Robinson,et al. TCR Repertoire Analysis by Next Generation Sequencing Allows Complex Differential Diagnosis of T Cell–Related Pathology , 2013, American journal of transplantation : official journal of the American Society of Transplantation and the American Society of Transplant Surgeons.
[13] Mikhail Shugay,et al. Towards error-free profiling of immune repertoires , 2014, Nature Methods.
[14] S. Tonegawa. Somatic generation of antibody diversity , 1983, Nature.
[15] Marie-Paule Lefranc,et al. IMGT , the international ImMunoGeneTics information system , 2003 .
[16] Jiajie Zhang,et al. PEAR: a fast and accurate Illumina Paired-End reAd mergeR , 2013, Bioinform..
[17] Kun-Mao Chao,et al. Aligning two sequences within a specified diagonal band , 1992, Comput. Appl. Biosci..
[18] David Wu,et al. High-Throughput Sequencing Detects Minimal Residual Disease in Acute T Lymphoblastic Leukemia , 2012, Science Translational Medicine.
[19] C. Janeway. Immunobiology: The Immune System in Health and Disease , 1996 .
[20] Ning Ma,et al. IgBLAST: an immunoglobulin variable domain sequence analysis tool , 2013, Nucleic Acids Res..
[21] C. Ponting,et al. Sequencing depth and coverage: key considerations in genomic analyses , 2014, Nature Reviews Genetics.
[22] Knut Reinert,et al. SeqAn An efficient, generic C++ library for sequence analysis , 2008, BMC Bioinformatics.
[23] A. Casrouge,et al. A Direct Estimate of the Human αβ T Cell Receptor Diversity , 1999 .
[24] Patrice Duroux,et al. IMGT/HighV QUEST paradigm for T cell receptor IMGT clonotype diversity and next generation repertoire immunoprofiling , 2013, Nature Communications.