m(6)A RNA methylation is regulated by microRNAs and promotes reprogramming to pluripotency.
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Qi Zhou | Yun-Gui Yang | Ying Zhang | Xu Zhao | Xiu-Jie Wang | Yun-Gui Yang | Jie Hao | Ang Li | Ying Yang | Hai-Lin Wang | Ya-Juan Hao | Guibin Jiang | Ying Zhang | W. Lai | Qi Zhou | Xiu-Jie Wang | Li-gang Wu | Tong Chen | Miao-Miao Li | Meng Wang | Weifang Han | Yong-Sheng Wu | Ying Lv | Libin Wang | Kang-Xuan Jin | Xu Zhao | Yuhuan Li | X. Ping | Lisi Sang | Tong Chen | Ya-Juan Hao | Miao-Miao Li | Meng Wang | Weifang Han | Yongsheng Wu | Ying Lv | Jie Hao | Libin Wang | Ang Li | Ying Yang | Kang-Xuan Jin | Yuhuan Li | Xiao-Li Ping | Wei-Yi Lai | Li-Gang Wu | Guibin Jiang | Hai-Lin Wang | Lisi Sang | Li-Bin Wang | Yun‐Gui Yang | Weiyi Lai
[1] Y. Groner,et al. Methylations of adenosine residues (m6A) in pre-mRNA are important for formation of late simian virus 40 mRNAs. , 1983, Virology.
[2] Erez Y. Levanon,et al. m6A mRNA methylation facilitates resolution of naïve pluripotency toward differentiation , 2015, Science.
[3] C. Glass,et al. Simple combinations of lineage-determining transcription factors prime cis-regulatory elements required for macrophage and B cell identities. , 2010, Molecular cell.
[4] Brad T. Sherman,et al. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources , 2008, Nature Protocols.
[5] Cole Trapnell,et al. TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions , 2013, Genome Biology.
[6] Donald Grierson,et al. Yeast targets for mRNA methylation , 2010, Nucleic acids research.
[7] R. Roeder,et al. Accurate transcription initiation by RNA polymerase II in a soluble extract from isolated mammalian nuclei. , 1983, Nucleic acids research.
[8] C. Mayr,et al. Widespread Shortening of 3′UTRs by Alternative Cleavage and Polyadenylation Activates Oncogenes in Cancer Cells , 2009, Cell.
[9] Marius Wernig,et al. A drug-inducible transgenic system for direct reprogramming of multiple somatic cell types , 2008, Nature Biotechnology.
[10] Thomas Preiss,et al. Mapping and significance of the mRNA methylome , 2013, Wiley interdisciplinary reviews. RNA.
[11] Jef Rozenski,et al. The RNA modification database, RNAMDB: 2011 update , 2010, Nucleic Acids Res..
[12] Austin G Smith,et al. Niche-Independent Symmetrical Self-Renewal of a Mammalian Tissue Stem Cell , 2005, PLoS biology.
[13] R. Desrosiers,et al. Identification of methylated nucleosides in messenger RNA from Novikoff hepatoma cells. , 1974, Proceedings of the National Academy of Sciences of the United States of America.
[14] G. Crooks,et al. WebLogo: a sequence logo generator. , 2004, Genome research.
[15] Chuan He,et al. Grand challenge commentary: RNA epigenetics? , 2010, Nature chemical biology.
[16] Michael Q. Zhang,et al. Epigenomic Analysis of Multilineage Differentiation of Human Embryonic Stem Cells , 2013, Cell.
[17] J. Bujnicki,et al. MODOMICS: a database of RNA modification pathways—2013 update , 2012, Nucleic Acids Res..
[18] S. Camper,et al. Effect of undermethylation on mRNA cytoplasmic appearance and half-life , 1984, Molecular and cellular biology.
[19] Nian Liu,et al. Probing N6-methyladenosine RNA modification status at single nucleotide resolution in mRNA and long noncoding RNA , 2013, RNA.
[20] Tao Pan,et al. Identification of recognition residues for ligation-based detection and quantitation of pseudouridine and N6-methyladenosine , 2007, Nucleic acids research.
[21] J. Hurwitz,et al. Messenger RNA. , 1962, Scientific American.
[22] Schraga Schwartz,et al. High-Resolution Mapping Reveals a Conserved, Widespread, Dynamic mRNA Methylation Program in Yeast Meiosis , 2013, Cell.
[23] P. Zamore,et al. Argonaute proteins , 2011, Current Biology.
[24] Jun Liu,et al. Methylation modifications in eukaryotic messenger RNA. , 2014, Journal of genetics and genomics = Yi chuan xue bao.
[25] Wenjun Guo,et al. Induction of pluripotent stem cells by defined factors is greatly improved by small-molecule compounds , 2008, Nature Biotechnology.
[26] Simon Hess,et al. The fat mass and obesity associated gene (Fto) regulates activity of the dopaminergic midbrain circuitry , 2013, Nature Neuroscience.
[27] Zhike Lu,et al. m6A-dependent regulation of messenger RNA stability , 2013, Nature.
[28] R J Roberts,et al. Sequence specificity of the human mRNA N6-adenosine methylase in vitro. , 1990, Nucleic acids research.
[29] Xiaodong Wang,et al. Argonaute2 Cleaves the Anti-Guide Strand of siRNA during RISC Activation , 2005, Cell.
[30] G. Meister. Argonaute proteins: functional insights and emerging roles , 2013, Nature Reviews Genetics.
[31] O. Elemento,et al. Comprehensive Analysis of mRNA Methylation Reveals Enrichment in 3′ UTRs and near Stop Codons , 2012, Cell.
[32] B. Moss,et al. Methylated nucleotides block 5′ terminus of HeLa cell messenger RNA , 1975, Cell.
[33] K. Sanderson,et al. RNase III deficient Salmonella typhimurium LT2 contains intervening sequences (IVSs) in its 23S rRNA. , 1998, FEMS microbiology letters.
[34] Arne Klungland,et al. ALKBH5 is a mammalian RNA demethylase that impacts RNA metabolism and mouse fertility. , 2013, Molecular cell.
[35] M. Tuck,et al. Inhibition of 6-methyladenine formation decreases the translation efficiency of dihydrofolate reductase transcripts. , 1999, The international journal of biochemistry & cell biology.
[36] T. Carell,et al. Systems-based analysis of modified tRNA bases. , 2011, Angewandte Chemie.
[37] Wei Li,et al. Activation of the Imprinted Dlk1-Dio3 Region Correlates with Pluripotency Levels of Mouse Stem Cells , 2010, The Journal of Biological Chemistry.
[38] H. Kleinman,et al. Basement membrane gene expression by Sertoli and peritubular myoid cells in vitro in the rat. , 1995, Biology of reproduction.
[39] Miao Yu,et al. A METTL3-METTL14 complex mediates mammalian nuclear RNA N6-adenosine methylation , 2013, Nature chemical biology.
[40] S. Zhong,et al. Adenosine Methylation in Arabidopsis mRNA is Associated with the 3′ End and Reduced Levels Cause Developmental Defects , 2012, Front. Plant Sci..
[41] Aaron R. Quinlan,et al. BIOINFORMATICS APPLICATIONS NOTE , 2022 .
[42] Ana Kozomara,et al. miRBase: integrating microRNA annotation and deep-sequencing data , 2010, Nucleic Acids Res..
[43] Schraga Schwartz,et al. Perturbation of m6A writers reveals two distinct classes of mRNA methylation at internal and 5' sites. , 2014, Cell reports.
[44] Chengqi Yi,et al. N6-Methyladenosine in Nuclear RNA is a Major Substrate of the Obesity-Associated FTO , 2011, Nature chemical biology.
[45] Samir Adhikari,et al. Mammalian WTAP is a regulatory subunit of the RNA N6-methyladenosine methyltransferase , 2014, Cell Research.
[46] Yang Wang,et al. N6-methyladenosine modification destabilizes developmental regulators in embryonic stem cells , 2014, Nature Cell Biology.
[47] Yun-Gui Yang,et al. N6-methyl-adenosine (m6A) in RNA: An Old Modification with A Novel Epigenetic Function , 2012, Genom. Proteom. Bioinform..
[48] Li Wang,et al. Crystal structure of the YTH domain of YTHDF2 reveals mechanism for recognition of N6-methyladenosine , 2014, Cell Research.
[49] Bing Ren,et al. N6-methyladenosine-dependent regulation of messenger RNA stability , 2013 .
[50] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[51] Chuan He,et al. FTO-dependent demethylation of N6-methyladenosine regulates mRNA splicing and is required for adipogenesis , 2014, Cell Research.
[52] Michel Herzog,et al. MTA Is an Arabidopsis Messenger RNA Adenosine Methylase and Interacts with a Homolog of a Sex-Specific Splicing Factor[W][OA] , 2008, The Plant Cell Online.
[53] Yi Xing,et al. m(6)A RNA modification controls cell fate transition in mammalian embryonic stem cells. , 2014, Cell stem cell.
[54] M. Kupiec,et al. Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq , 2012, Nature.
[55] S. Kane,et al. Precise localization of m6A in Rous sarcoma virus RNA reveals clustering of methylation sites: implications for RNA processing , 1985, Molecular and cellular biology.
[56] Anton J. Enright,et al. MicroRNA targets in Drosophila , 2003, Genome Biology.
[57] D. Bartel. MicroRNAs Genomics, Biogenesis, Mechanism, and Function , 2004, Cell.
[58] David G Hendrickson,et al. Differential analysis of gene regulation at transcript resolution with RNA-seq , 2012, Nature Biotechnology.
[59] F. Rottman,et al. Purification and cDNA cloning of the AdoMet-binding subunit of the human mRNA (N6-adenosine)-methyltransferase. , 1997, RNA.
[60] B. Moss,et al. Nucleotide sequences at the N6-methyladenosine sites of HeLa cell messenger ribonucleic acid. , 1977, Biochemistry.
[61] Ke Liu,et al. Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain. , 2014, Nature chemical biology.
[62] Hadley Wickham,et al. ggplot2 - Elegant Graphics for Data Analysis (2nd Edition) , 2017 .
[63] Minoru Yoshida,et al. RNA-Methylation-Dependent RNA Processing Controls the Speed of the Circadian Clock , 2013, Cell.
[64] J. Bokar. The biosynthesis and functional roles of methylated nucleosides in eukaryotic mRNA , 2005 .