Time-resolved characterization of cAMP/PKA-dependent signaling reveals that platelet inhibition is a concerted process involving multiple signaling pathways.

One of the most important physiological platelet inhibitors is endothelium-derived prostacyclin which stimulates the platelet cyclic adenosine monophosphate/protein kinase A (cAMP/PKA)-signaling cascade and inhibits virtually all platelet-activating key mechanisms. Using quantitative mass spectrometry, we analyzed time-resolved phosphorylation patterns in human platelets after treatment with iloprost, a stable prostacyclin analog, for 0, 10, 30, and 60 seconds to characterize key mediators of platelet inhibition and activation in 3 independent biological replicates. We quantified over 2700 different phosphorylated peptides of which 360 were significantly regulated upon stimulation. This comprehensive and time-resolved analysis indicates that platelet inhibition is a multipronged process involving different kinases and phosphatases as well as many previously unanticipated proteins and pathways.

[1]  O. McCarty,et al.  GPVI and integrin αIIbβ3 signaling in platelets , 2005, Journal of thrombosis and haemostasis : JTH.

[2]  M. Walsh,et al.  The α, but Not the β, Isoform of the Human Thromboxane A2 Receptor Is a Target for Prostacyclin-mediated Desensitization* , 2000, The Journal of Biological Chemistry.

[3]  U. Walter,et al.  Phosphorylation of CalDAG‐GEFI by protein kinase A prevents Rap1b activation , 2013, Journal of thrombosis and haemostasis : JTH.

[4]  A. Dutta-Roy,et al.  Purification and properties of prostaglandin E1/prostacyclin receptor of human blood platelets. , 1987, The Journal of biological chemistry.

[5]  H. Varmus,et al.  Association of the amino‐terminal half of c‐Src with focal adhesions alters their properties and is regulated by phosphorylation of tyrosine 527. , 1994, The EMBO journal.

[6]  C. Dermardirossian,et al.  p21-activated Kinase 1 Phosphorylates and Regulates 14-3-3 Binding to GEF-H1, a Microtubule-localized Rho Exchange Factor* , 2004, Journal of Biological Chemistry.

[7]  Albert Sickmann,et al.  Systematic and quantitative comparison of digest efficiency and specificity reveals the impact of trypsin quality on MS-based proteomics. , 2012, Journal of proteomics.

[8]  S. Steinhubl,et al.  A brief review of the past and future of platelet P2Y12 antagonist , 2012, Coronary artery disease.

[9]  M. Chen,et al.  In situ phosphorylation of platelet actin-binding protein by cAMP-dependent protein kinase stabilizes it against proteolysis by calpain. , 1989, The Journal of biological chemistry.

[10]  M. Walsh,et al.  The alpha, but not the beta, isoform of the human thromboxane A2 receptor is a target for prostacyclin-mediated desensitization. , 2000, The Journal of biological chemistry.

[11]  Yu Xue,et al.  GPS 2.0, a Tool to Predict Kinase-specific Phosphorylation Sites in Hierarchy *S , 2008, Molecular & Cellular Proteomics.

[12]  T. Lincoln,et al.  Phosphorylation of mammalian myosin light chain kinases by the catalytic subunit of cyclic AMP-dependent protein kinase and by cyclic GMP-dependent protein kinase. , 1984, The Journal of biological chemistry.

[13]  Tony Pawson,et al.  Specificity in Signal Transduction From Phosphotyrosine-SH2 Domain Interactions to Complex Cellular Systems , 2004, Cell.

[14]  Thomas Dandekar,et al.  Time-resolved in silico modeling of fine-tuned cAMP signaling in platelets: feedback loops, titrated phosphorylations and pharmacological modulation , 2011, BMC Systems Biology.

[15]  B. Snel,et al.  STRING: a web-server to retrieve and display the repeatedly occurring neighbourhood of a gene. , 2000, Nucleic acids research.

[16]  J. Fain,et al.  Effects of adenosine deaminase on cyclic adenosine monophosphate accumulation, lipolysis, and glucose metabolism of fat cells. , 1975, The Journal of biological chemistry.

[17]  N. Hay,et al.  ADP-Stimulated Activation of Akt During Integrin Outside-In Signaling Promotes Platelet Spreading by Inhibiting Glycogen Synthase Kinase-3&bgr; , 2012, Arteriosclerosis, thrombosis, and vascular biology.

[18]  C. Harley,et al.  Phosphorylation of human pleckstrin on Ser-113 and Ser-117 by protein kinase C. , 1996, The Biochemical journal.

[19]  M. Wilm,et al.  IRAG mediates NO/cGMP-dependent inhibition of platelet aggregation and thrombus formation. , 2007, Blood.

[20]  K. Nakayama,et al.  Phosphorylation of β-Catenin by Cyclic AMP-Dependent Protein Kinase Stabilizes β-Catenin through Inhibition of Its Ubiquitination , 2005, Molecular and Cellular Biology.

[21]  A. Burlingame,et al.  Phosphopeptide Screen Uncovers Novel Phosphorylation Sites of Nedd4-2 That Potentiate Its Inhibition of the Epithelial Na+ Channel* , 2010, The Journal of Biological Chemistry.

[22]  Albert Sickmann,et al.  The good, the bad, the ugly: Validating the mass spectrometric analysis of modified peptides , 2011, Proteomics.

[23]  J. Vane,et al.  An Enzyme Isolated from Arteries Transforms Prostaglandin Endoperoxides to an Unstable Substance that Inhibits Platelet Aggregation. , 1977 .

[24]  C. Van Geet,et al.  Human platelet pathology related to defects in the G‐protein signaling cascade , 2009, Journal of thrombosis and haemostasis : JTH.

[25]  J. Geiger,et al.  A protein phosphorylation-based assay for screening and monitoring of drugs modulating cyclic nucleotide pathways. , 2010, Analytical biochemistry.

[26]  T. Suda,et al.  Translocation of the Csk homologous kinase (Chk/Hyl) controls activity of CD36‐anchored Lyn tyrosine kinase in thrombin‐stimulated platelets , 1997, The EMBO journal.

[27]  K. Naseem,et al.  Thrombospondin-1 induces platelet activation through CD36-dependent inhibition of the cAMP/protein kinase A signaling cascade. , 2010, Blood.

[28]  T. Köcher,et al.  Universal and confident phosphorylation site localization using phosphoRS. , 2011, Journal of proteome research.

[29]  I. Hers,et al.  Protein Kinase C-mediated Phosphorylation and Activation of PDE3A Regulate cAMP Levels in Human Platelets* , 2009, Journal of Biological Chemistry.

[30]  J. Chen,et al.  A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. , 2006, Molecular cell.

[31]  Hanno Steen,et al.  Proteomic analysis of palmitoylated platelet proteins. , 2010, Blood.

[32]  E. Lapetina,et al.  Functional relationship between cyclic AMP-dependent protein phosphorylation and platelet inhibition. , 1990, The Biochemical journal.

[33]  A. Ridley Rho GTPases and cell migration. , 2001, Journal of cell science.

[34]  K. Nakayama,et al.  Phosphorylation of beta-catenin by cyclic AMP-dependent protein kinase stabilizes beta-catenin through inhibition of its ubiquitination. , 2005, Molecular and cellular biology.

[35]  References , 1971 .

[36]  Jung Hwan Kim,et al.  Mechanism of Regulation of Group IVA Phospholipase A2 Activity by Ser727 Phosphorylation* , 2008, Journal of Biological Chemistry.

[37]  E. Nishida,et al.  Cofilin phosphorylation by LIM-kinase 1 and its role in Rac-mediated actin reorganization , 1998, Nature.

[38]  N. Myeku,et al.  cAMP stimulates the ubiquitin/proteasome pathway in rat spinal cord neurons , 2012, Neuroscience Letters.

[39]  H. Tai,et al.  Serine 331 is major site of phosphorylation and desensitization induced by protein kinase C in thromboxane receptor alpha. , 2002, Acta pharmacologica Sinica.

[40]  D. Praticò,et al.  Thromboxane, prostacyclin and isoprostanes: therapeutic targets in atherogenesis. , 2005, Trends in pharmacological sciences.

[41]  M. Ashburner,et al.  Gene Ontology: tool for the unification of biology , 2000, Nature Genetics.

[42]  M. J. Bragado,et al.  Protein kinases A and C and phosphatidylinositol 3 kinase regulate glycogen synthase kinase‐3A serine 21 phosphorylation in boar spermatozoa , 2009, Journal of cellular biochemistry.

[43]  A. Smolenski,et al.  Rap1GAP2 is a new GTPase-activating protein of Rap1 expressed in human platelets. , 2005, Blood.

[44]  A. Smolenski,et al.  Novel roles of cAMP/cGMP‐dependent signaling in platelets , 2012, Journal of thrombosis and haemostasis : JTH.

[45]  M. O'Keeffe,et al.  Homologous desensitization of signalling by the alpha (α) isoform of the human thromboxane A2 receptor: A specific role for nitric oxide signalling , 2007, Biochimica et biophysica acta.

[46]  T. Pestina,et al.  Role of the Src family kinase Lyn in TxA2 production, adenosine diphosphate secretion, Akt phosphorylation, and irreversible aggregation in platelets stimulated with gamma-thrombin. , 2002, Blood.

[47]  J. Aznar,et al.  Regulation of cytosolic PlA2 activity by PP1/PP2A serine/threonine phosphatases in human platelets , 2006, Platelets.

[48]  S. Kunapuli,et al.  Rapid ubiquitination of Syk following GPVI activation in platelets. , 2005, Blood.

[49]  Lennart Martens,et al.  The first comprehensive and quantitative analysis of human platelet protein composition allows the comparative analysis of structural and functional pathways. , 2012, Blood.

[50]  P. Evans,et al.  Bin2 Is a Membrane Sculpting N-BAR Protein That Influences Leucocyte Podosomes, Motility and Phagocytosis , 2012, PloS one.

[51]  S. Kunapuli,et al.  Negative Regulation of Gq-mediated Pathways in Platelets by G12/13 Pathways through Fyn Kinase* , 2011, The Journal of Biological Chemistry.

[52]  K. Chung,et al.  Evidence that alpha-synuclein functions as a negative regulator of Ca(++)-dependent alpha-granule release from human platelets. , 2002, Blood.

[53]  C. Rienstra,et al.  Membrane-induced folding of the cAMP-regulated phosphoprotein endosulfine-alpha. , 2008, Biochemistry.