Exogenous and endogenous dsRNAs perceived by plant Dicer-like 4 protein in the RNAi-depleted cellular context
暂无分享,去创建一个
R. Golbik | V. Pantaleo | L. Rubino | S. Behrens | A. Consiglio | P. Leonetti | T. Gursinsky | Dennis Arendt
[1] Mohammad-javad Sanaei,et al. The role of noncoding RNAs in metabolic reprogramming of cancer cells , 2023, Cellular & Molecular Biology Letters.
[2] S. Ding,et al. Mammalian viral suppressors of RNA interference. , 2022, Trends in biochemical sciences.
[3] V. Pantaleo,et al. Regulation of plant antiviral defense genes via host RNA-silencing mechanisms , 2021, Virology journal.
[4] M. Fawzy,et al. Association of cyclin-dependent kinase inhibitor 2B antisense RNA 1 gene expression and rs2383207 variant with breast cancer risk and survival , 2021, Cellular & molecular biology letters.
[5] P. D. Nagy,et al. Tombusviruses orchestrate the host endomembrane system to create elaborate membranous replication organelles. , 2021, Current opinion in virology.
[6] V. Pantaleo,et al. Endogenous activated small interfering RNAs in virus‐infected Brassicaceae crops show a common host gene‐silencing pattern affecting photosynthesis and stress response , 2020, The New phytologist.
[7] Hongwei Guo,et al. The diversity of post-transcriptional gene silencing mediated by small silencing RNAs in plants. , 2020, Essays in biochemistry.
[8] Hong Zhang,et al. Plant 22-nt siRNAs mediate translational repression and stress adaptation , 2020, Nature.
[9] Rafal Bartoszewski,et al. Editorial focus: understanding off-target effects as the key to successful RNAi therapy , 2019, Cellular & Molecular Biology Letters.
[10] T. Fukuhara,et al. Long DCL4-substrate dsRNAs efficiently induce RNA interference in plant cells , 2019, Scientific Reports.
[11] B. Meyers,et al. 24-nt reproductive phasiRNAs are broadly present in angiosperms , 2019, Nature Communications.
[12] Yang Li,et al. Small RNA-based antimicrobial immunity , 2018, Nature Reviews Immunology.
[13] J. van der Oost,et al. Ethyl acetate production by the elusive alcohol acetyltransferase from yeast. , 2017, Metabolic engineering.
[14] S. Liuni,et al. A fuzzy method for RNA-Seq differential expression analysis in presence of multireads , 2016, BMC Bioinformatics.
[15] Annemarthe G. van der Veen,et al. Inactivation of the type I interferon pathway reveals long double‐stranded RNA‐mediated RNA interference in mammalian cells , 2016, The EMBO journal.
[16] Måns Magnusson,et al. MultiQC: summarize analysis results for multiple tools and samples in a single report , 2016, Bioinform..
[17] W. Huber,et al. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2 , 2014, Genome Biology.
[18] Xianbing Wang,et al. Virus infection triggers widespread silencing of host genes by a distinct class of endogenous siRNAs in Arabidopsis , 2014, Proceedings of the National Academy of Sciences.
[19] L. Aravind,et al. New perspectives on the diversification of the RNA interference system: insights from comparative genomics and small RNA sequencing , 2014, Wiley interdisciplinary reviews. RNA.
[20] Anton Glieder,et al. Carbon source dependent promoters in yeasts , 2014, Microbial Cell Factories.
[21] L. Steinmetz,et al. Gene regulation by antisense transcription , 2013, Nature Reviews Genetics.
[22] V. Pantaleo,et al. AGO/RISC-mediated antiviral RNA silencing in a plant in vitro system , 2013, Nucleic acids research.
[23] Colin N. Dewey,et al. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome , 2011, BMC Bioinformatics.
[24] Marcel Martin. Cutadapt removes adapter sequences from high-throughput sequencing reads , 2011 .
[25] A. Fukudome,et al. Specific requirement of DRB4, a dsRNA-binding protein, for the in vitro dsRNA-cleaving activity of Arabidopsis Dicer-like 4. , 2011, RNA.
[26] Frederick P. Roth,et al. Reconstitution of human RNA interference in budding yeast , 2011, Nucleic acids research.
[27] N. Friedman,et al. Strand-specific RNA sequencing reveals extensive regulated long antisense transcripts that are conserved across yeast species , 2010, Genome Biology.
[28] C. Sullivan,et al. Unique Functionality of 22 nt miRNAs in Triggering RDR6-Dependent siRNA Biogenesis from Target Transcripts in Arabidopsis , 2010, Nature Structural &Molecular Biology.
[29] Vincent Moulton,et al. Structural and Functional Analysis of Viral siRNAs , 2010, PLoS pathogens.
[30] J. M. Lee,et al. The telomere-specific non-LTR retrotransposons SART1 and TRAS1 are suppressed by Piwi subfamily proteins in the silkworm, Bombyx mori , 2009, Cellular & Molecular Biology Letters.
[31] B. Schulz,et al. Replication of Tomato bushy stunt virus RNA in a plant in vitro system. , 2009, Virology.
[32] V. Beneš,et al. The MIQE guidelines: minimum information for publication of quantitative real-time PCR experiments. , 2009, Clinical chemistry.
[33] Cole Trapnell,et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome , 2009, Genome Biology.
[34] Todd Blevins,et al. Evolution of Arabidopsis MIR genes generates novel microRNA classes , 2008, Nucleic acids research.
[35] P. D. Nagy. Yeast as a model host to explore plant virus-host interactions. , 2008, Annual review of phytopathology.
[36] Xuemei Chen,et al. DICER-LIKE2 Plays a Primary Role in Transitive Silencing of Transgenes in Arabidopsis , 2008, PloS one.
[37] Anuj Kumar,et al. Unconventional Genomic Architecture in the Budding Yeast Saccharomyces cerevisiae Masks the Nested Antisense Gene NAG1 , 2008, Eukaryotic Cell.
[38] I. MacRae,et al. Ribonuclease revisited: structural insights into ribonuclease III family enzymes. , 2007, Current opinion in structural biology.
[39] T. Fukuhara,et al. The dsRNA-binding protein DRB4 interacts with the Dicer-like protein DCL4 in vivo and functions in the trans-acting siRNA pathway , 2007, Plant Molecular Biology.
[40] B. Vojtesek,et al. Endoplasmic reticulum stress and apoptosis , 2006, Cellular & Molecular Biology Letters.
[41] Jinsong Bao,et al. Hierarchical Action and Inhibition of Plant Dicer-Like Proteins in Antiviral Defense , 2006, Science.
[42] V. Pantaleo,et al. Cytological analysis of Saccharomyces cerevisiae cells supporting cymbidium ringspot virus defective interfering RNA replication. , 2006, The Journal of general virology.
[43] R. Poethig,et al. A pathway for the biogenesis of trans-acting siRNAs in Arabidopsis. , 2005, Genes & development.
[44] Edwards Allen,et al. DICER-LIKE 4 functions in trans-acting small interfering RNA biogenesis and vegetative phase change in Arabidopsis thaliana. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[45] David P. Bartel,et al. Partially Redundant Functions of Arabidopsis DICER-like Enzymes and a Role for DCL4 in Producing trans-Acting siRNAs , 2005, Current Biology.
[46] Adam M. Gustafson,et al. microRNA-Directed Phasing during Trans-Acting siRNA Biogenesis in Plants , 2005, Cell.
[47] Jianbo Chen,et al. Alternate, virus-induced membrane rearrangements support positive-strand RNA virus genome replication. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[48] V. Pantaleo,et al. The p36 and p95 replicase proteins of Carnation Italian ringspot virus cooperate in stabilizing defective interfering RNA. , 2004, The Journal of general virology.
[49] Albert Sickmann,et al. The proteome of Saccharomyces cerevisiae mitochondria , 2003, Proceedings of the National Academy of Sciences of the United States of America.
[50] Marjori Matzke,et al. Evidence for Nuclear Processing of Plant Micro RNA and Short Interfering RNA Precursors1[w] , 2003, Plant Physiology.
[51] Michael Zuker,et al. Mfold web server for nucleic acid folding and hybridization prediction , 2003, Nucleic Acids Res..
[52] Sherif Abou Elela,et al. Sequence dependence of substrate recognition and cleavage by yeast RNase III. , 2003, Journal of molecular biology.
[53] J. Baker,et al. The overlapping RNA-binding domains of p33 and p92 replicase proteins are essential for tombusvirus replication. , 2003, Virology.
[54] Z. Bánfalvi,et al. Low temperature inhibits RNA silencing‐mediated defence by the control of siRNA generation , 2003, The EMBO journal.
[55] V. Pantaleo,et al. Replication of Carnation Italian Ringspot Virus Defective Interfering RNA in Saccharomyces cerevisiae , 2003, Journal of Virology.
[56] B. Reinhart,et al. MicroRNAs in plants. , 2002, Genes & development.
[57] Tom H. Pringle,et al. The human genome browser at UCSC. , 2002, Genome research.
[58] S. Eddy. Computational Genomics of Noncoding RNA Genes , 2002, Cell.
[59] C. Hornyik,et al. Short Defective Interfering RNAs of Tombusviruses Are Not Targeted but Trigger Post-Transcriptional Gene Silencing against Their Helper Virus Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.010366. , 2002, The Plant Cell Online.
[60] Thomas D. Schmittgen,et al. Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) Method. , 2001, Methods.
[61] V. Kushnirov. Rapid and reliable protein extraction from yeast , 2000, Yeast.
[62] Yian-Biao Zhang,et al. The VRG4 Gene Is Required for GDP-mannose Transport into the Lumen of the Golgi in the Yeast, Saccharomyces cerevisiae * , 1997, The Journal of Biological Chemistry.
[63] P. Ahlquist,et al. Brome mosaic virus helicase- and polymerase-like proteins colocalize on the endoplasmic reticulum at sites of viral RNA synthesis , 1996, Journal of virology.
[64] P. Ahlquist,et al. Complete replication of an animal virus and maintenance of expression vectors derived from it in Saccharomyces cerevisiae. , 1996, Proceedings of the National Academy of Sciences of the United States of America.
[65] Sherif Abou Elela,et al. RNase III Cleaves Eukaryotic Preribosomal RNA at a U3 snoRNP-Dependent Site , 1996, Cell.
[66] T. Dalmay,et al. The replication of cymbidium ringspot tombusvirus defective interfering-satellite RNA hybrid molecules , 1992, Virology.
[67] H. Vaucheret,et al. Respective contributions of Arabidopsis DCL2 and DCL4 to RNA silencing. , 2015, The Plant journal : for cell and molecular biology.
[68] Thomas R. Gingeras,et al. STAR: ultrafast universal RNA-seq aligner , 2013, Bioinform..
[69] E. Lefkowitz,et al. Virus taxonomy: classification and nomenclature of viruses , 2012 .
[70] Jeffrey P. Mower,et al. RNAi in Budding Yeast , 2009, Science.
[71] Kazuo Shinozaki,et al. Specific interactions between Dicer-like proteins and HYL1/DRB- family dsRNA-binding proteins in Arabidopsis thaliana , 2004, Plant Molecular Biology.
[72] L. Rubino,et al. Expression of a plant virus non-structural protein in Saccharomyces cerevisiae causes membrane proliferation and altered mitochondrial morphology. , 2000, The Journal of general virology.
[73] A. Covarrubias,et al. Construction of a CUP1 promoter-based vector to modulate gene expression in Saccharomyces cerevisiae. , 1996, Gene.
[74] G. Martelli,et al. Molecular biology of tombusviridae. , 1994, Advances in virus research.