Taxonomy of bacterial viruses: establishment of tailed virus genera and the other Caudovirales

SummaryBacterial viruses have been classified into 13 families and 1 unassigned genus. A new order, Caudovirales, has now been established, comprising the three families of tailed bacterial viruses, based on similarities in tailed virus morphology, replication, and assembly. In addition, genera have been established for some species in each tailed virus family, based on properties involving viral DNA replication and packaging, and on some features specific to particular genera (e.g., DNA-termini linked proteins, virus-encoded polymerases, and ability to establish temperate infections). At present, there are six genera in the family Myoviridae (viruses with contractile tails), six in the family Siphoviridae (viruses with long, noncontractile tails), and three in the family Podoviridae (viruses with short noncontractile tails). In recognition that the definitions of tailed virus genera represent a “work in progress” and to keep the nomenclature flexible, tailed virus genera have been assigned vernacular names based on their type species.

[1]  P. Wildy Classification and nomenclature of viruses : first report of the International Committee on Nomenclature of Viruses , 1971 .

[2]  H. Warner,et al.  Bacteriophage T5 and Related Phages , 1988 .

[3]  R. Hausmann The T7 Group , 1988 .

[4]  J. Rocourt Viruses of prokaryotes: Ackermann, H.W. & Dubow, M.S. 2 vol. (18.5×26 cm), 444 pages. CRC Press. Inc. West Palm Beach, 1987 , 1988 .

[5]  M. Salas Phages with Protein Attached to the DNA Ends , 1988 .

[6]  E. Six,et al.  The P2-like Phages and Their Parasite, P4 , 1988 .

[7]  L. Black DNA packaging in dsDNA bacteriophages. , 1989, Annual review of microbiology.

[8]  C. Pringle,et al.  The order Mononegavirales , 2010 .

[9]  H. Neve,et al.  Species and type phages of lactococcal bacteriophages. , 1991, Intervirology.

[10]  G. Sarkis,et al.  DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics , 1993, Molecular microbiology.

[11]  J. Drake,et al.  Molecular Biology of Bacteriophage T4 , 1994 .

[12]  A. Jarvis,et al.  Sequencing and analysis of the prolate-headed lactococcal bacteriophage c2 genome and identification of the structural genes , 1995, Applied and environmental microbiology.

[13]  C. Schleper,et al.  Viruses, plasmids and other genetic elements of thermophilic and hyperthermophilic Archaea. , 1996, FEMS microbiology reviews.

[14]  H. Ackermann,et al.  A catalogue of T4-type bacteriophages , 1997, Archives of Virology.

[15]  H. Ochman,et al.  Amelioration of Bacterial Genomes: Rates of Change and Exchange , 1997, Journal of Molecular Evolution.

[16]  L. Blanco,et al.  Protein‐primed DNA replication: a transition between two modes of priming by a unique DNA polymerase , 1997, The EMBO journal.

[17]  D. Cavanagh Nidovirales: a new order comprising Coronaviridae and Arteriviridae. , 1997, Archives of virology.

[18]  M. Mayo,et al.  Guidelines to the demarcation of virus species , 1997, Archives of Virology.

[19]  H. Ackermann Tailed Bacteriophages: The Order Caudovirales , 1998, Advances in Virus Research.