Proteomic Analysis of Integrin-Associated Complexes Identifies RCC2 as a Dual Regulator of Rac1 and Arf6

Regulator of chromosome condensation–2 is a component of fibronectin-activated signaling pathways that regulate cell migration. Integrin Interactors Integrins mediate cell-cell adhesion, as well as cell adhesion to the extracellular matrix. Identification of the intracellular signaling networks associated with integrins is of interest because integrins are involved in processes such as invasion of tumor cells during metastasis and leukocyte infiltration during inflammation. Humphries et al. developed a method of isolating protein complexes associated with α5β1 integrin, which binds to fibronectin, and with α4β1 integrin, which binds to vascular cell adhesion molecule–1. Although a subset of proteins was detected in both the α5β1 and α4β1 networks, there were several receptor-specific proteins. In particular, regulator of chromosome condensation–2 (RCC2) was identified as a component of the α5β1 integrin–associated signaling network. RCC2 promoted fibronectin-dependent migration by inhibiting two different subnetworks (Rac1 and Arf6). These techniques provide the means to investigate the composition and function of adhesion complexes under different physiological conditions. The binding of integrin adhesion receptors to their extracellular matrix ligands controls cell morphology, movement, survival, and differentiation in various developmental, homeostatic, and disease processes. Here, we report a methodology to isolate complexes associated with integrin adhesion receptors, which, like other receptor-associated signaling complexes, have been refractory to proteomic analysis. Quantitative, comparative analyses of the proteomes of two receptor-ligand pairs, α4β1–vascular cell adhesion molecule–1 and α5β1–fibronectin, defined both core and receptor-specific components. Regulator of chromosome condensation–2 (RCC2) was detected in the α5β1–fibronectin signaling network at an intersection between the Rac1 and adenosine 5′-diphosphate ribosylation factor 6 (Arf6) subnetworks. RCC2 knockdown enhanced fibronectin-induced activation of both Rac1 and Arf6 and accelerated cell spreading, suggesting that RCC2 limits the signaling required for membrane protrusion and delivery. Dysregulation of Rac1 and Arf6 function by RCC2 knockdown also abolished persistent migration along fibronectin fibers, indicating a functional role for RCC2 in directional cell movement. This proteomics workflow now opens the way to further dissection and systems-level analyses of adhesion signaling.

[1]  C. McCulloch,et al.  Force activates smooth muscle α-actin promoter activity through the Rho signaling pathway , 2007, Journal of Cell Science.

[2]  J. Garin,et al.  The mammalian passenger protein TD-60 is an RCC1 family member with an essential role in prometaphase to metaphase progression. , 2003, Developmental cell.

[3]  S. Itzkovitz,et al.  Functional atlas of the integrin adhesome , 2007, Nature Cell Biology.

[4]  C. Albigès-Rizo,et al.  Talin Concentrates to the Midbody Region During Mammalian Cell Cytokinesis , 1999, The journal of histochemistry and cytochemistry : official journal of the Histochemistry Society.

[5]  Kenneth M. Yamada,et al.  Transmembrane crosstalk between the extracellular matrix and the cytoskeleton , 2001, Nature Reviews Molecular Cell Biology.

[6]  David Boettiger,et al.  Mechanically Activated Integrin Switch Controls α5β1 Function , 2009, Science.

[7]  S. Khorasanizadeh,et al.  Centromeric Aurora-B Activation Requires TD-60, Microtubules, and Substrate Priming Phosphorylation , 2008, Science.

[8]  J. Yates,et al.  A model for random sampling and estimation of relative protein abundance in shotgun proteomics. , 2004, Analytical chemistry.

[9]  Michael P. Sheetz,et al.  Force Sensing by Mechanical Extension of the Src Family Kinase Substrate p130Cas , 2006, Cell.

[10]  T. Kupper,et al.  Distinct cellular functions mediated by different VLA integrin α subunit cytoplasmic domains , 1992, Cell.

[11]  M. Moran,et al.  Large-scale mapping of human protein–protein interactions by mass spectrometry , 2007, Molecular systems biology.

[12]  Sheila M. Thomas,et al.  Binding of paxillin to α4 integrins modifies integrin-dependent biological responses , 1999, Nature.

[13]  M. Humphries,et al.  Dual Functionality of the Anti-β1 Integrin Antibody, 12G10, Exemplifies Agonistic Signalling from the Ligand Binding Pocket of Integrin Adhesion Receptors* , 2005, Journal of Biological Chemistry.

[14]  Richard O Hynes,et al.  Integrins Bidirectional, Allosteric Signaling Machines , 2002, Cell.

[15]  S. L. Wong,et al.  Towards a proteome-scale map of the human protein–protein interaction network , 2005, Nature.

[16]  H. Lehrach,et al.  A Human Protein-Protein Interaction Network: A Resource for Annotating the Proteome , 2005, Cell.

[17]  R. Fässler,et al.  Mechanisms that regulate adaptor binding to β-integrin cytoplasmic tails , 2009, Journal of Cell Science.

[18]  G. G. Stokes "J." , 1890, The New Yale Book of Quotations.

[19]  M. Humphries,et al.  Alpha4 integrin binding interfaces on VCAM-1 and MAdCAM-1. Integrin binding footprints identify accessory binding sites that play a role in integrin specificity. , 1997, The Journal of biological chemistry.

[20]  Micah Dembo,et al.  Focal adhesion kinase is involved in mechanosensing during fibroblast migration , 2001, Proceedings of the National Academy of Sciences of the United States of America.

[21]  Tao Xu,et al.  Quantitative Mass Spectrometry Identifies Insulin Signaling Targets in C. elegans , 2007, Science.

[22]  Adam Byron,et al.  Integrin ligands at a glance , 2006, Journal of Cell Science.

[23]  G M Bokoch,et al.  Activation of Rac and Cdc42 by integrins mediates cell spreading. , 1998, Molecular biology of the cell.

[24]  John R Yates,et al.  Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. , 2007, Nature Reviews Molecular Cell Biology.

[25]  Richard G. W. Anderson,et al.  Integrins Regulate Rac Targeting by Internalization of Membrane Domains , 2004, Science.

[26]  D. Botstein,et al.  Cluster analysis and display of genome-wide expression patterns. , 1998, Proceedings of the National Academy of Sciences of the United States of America.

[27]  T. Springer,et al.  Specialized functional properties of the integrin alpha 4 cytoplasmic domain. , 1995, Molecular biology of the cell.

[28]  Razvan C. Bunescu,et al.  Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome , 2005, Genome Biology.

[29]  Jian-Ping Xiong,et al.  Structure and mechanics of integrin-based cell adhesion. , 2007, Current opinion in cell biology.

[30]  M. Barbacid,et al.  p619, a giant protein related to the chromosome condensation regulator RCC1, stimulates guanine nucleotide exchange on ARF1 and Rab proteins. , 1996, The EMBO journal.

[31]  Donald E. Ingber,et al.  Integrin binding and mechanical tension induce movement of mRNA and ribosomes to focal adhesions , 1998, Nature.

[32]  M. Mann,et al.  RNA and RNA Binding Proteins Participate in Early Stages of Cell Spreading through Spreading Initiation Centers , 2004, Cell.

[33]  M. Carmena Cytokinesis: the final stop for the chromosomal passengers. , 2008, Biochemical Society transactions.

[34]  D. Scott,et al.  Arf6 and microtubules in adhesion-dependent trafficking of lipid rafts , 2007, Nature Cell Biology.

[35]  M. Humphries,et al.  Syndecan-4–dependent Rac1 regulation determines directional migration in response to the extracellular matrix , 2007, The Journal of cell biology.

[36]  N. Sonenberg,et al.  Fibronectin controls cap-dependent translation through beta1 integrin and eukaryotic initiation factors 4 and 2 coordinated pathways. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[37]  Christopher W. Jones,et al.  Perturbing integrin function inhibits microtubule growth from centrosomes, spindle assembly, and cytokinesis , 2006, The Journal of cell biology.

[38]  Timothy D. Veenstra,et al.  Mechanically Activated Integrin Switch Controls a 5 b 1 Function , 2009 .

[39]  Yukinori Endo,et al.  A Rac switch regulates random versus directionally persistent cell migration , 2005, The Journal of cell biology.

[40]  C. Streuli Integrins and cell-fate determination , 2009, Journal of Cell Science.

[41]  K. Oegema,et al.  Inhibition of Rac by the GAP Activity of Centralspindlin Is Essential for Cytokinesis , 2008, Science.

[42]  Nicholas H Brown,et al.  Integrins and the actin cytoskeleton. , 2007, Current opinion in cell biology.

[43]  G. Plopper,et al.  Rapid induction and isolation of focal adhesion complexes. , 1993, Biochemical and biophysical research communications.