Dissolved Organic Carbon as Major Environmental Factor Affecting Bacterioplankton Communities in Mountain Lakes of Eastern Japan

[1]  A. E. Greenberg,et al.  Standard Methods for the Examination of Water and Wastewater seventh edition , 2013 .

[2]  Takao Suzuki,et al.  Within‐lake and watershed determinants of carbon dioxide in surface water: A comparative analysis of a variety of lakes in the Japanese Islands , 2011 .

[3]  H. Grossart,et al.  Singlet oxygen, a neglected but important environmental factor: short-term and long-term effects on bacterioplankton composition in a humic lake. , 2010, Environmental microbiology.

[4]  J. Pernthaler,et al.  Aggregate formation in a freshwater bacterial strain induced by growth state and conspecific chemical cues. , 2010, Environmental microbiology.

[5]  H. Laudon,et al.  Lake secondary production fueled by rapid transfer of low molecular weight organic carbon from terrestrial sources to aquatic consumers. , 2010, Ecology letters.

[6]  H. Grossart,et al.  Enrichment and cultivation of pelagic bacteria from a humic lake using phenol and humic matter additions. , 2010, FEMS microbiology ecology.

[7]  H. Grossart,et al.  Changes in Pelagic Bacteria Communities Due to Leaf Litter Addition , 2010, Microbial Ecology.

[8]  A. Eiler,et al.  High Ratio of Bacteriochlorophyll Biosynthesis Genes to Chlorophyll Biosynthesis Genes in Bacteria of Humic Lakes , 2009, Applied and Environmental Microbiology.

[9]  K. McMahon,et al.  Evidence for structuring of bacterial community composition by organic carbon source in temperate lakes. , 2009, Environmental microbiology.

[10]  P. Ask,et al.  Whole-lake estimates of carbon flux through algae and bacteria in benthic and pelagic habitats of clear-water lakes. , 2009, Ecology.

[11]  M. Hahn,et al.  Involvement of Cell Surface Structures in Size-Independent Grazing Resistance of Freshwater Actinobacteria , 2009, Applied and Environmental Microbiology.

[12]  Michael Zeder,et al.  Spatio-temporal niche separation of planktonic Betaproteobacteria in an oligo-mesotrophic lake. , 2008, Environmental microbiology.

[13]  M. Frischer,et al.  Bacterial Community Structure of Acid-Impacted Lakes: What Controls Diversity? , 2008, Applied and Environmental Microbiology.

[14]  Wim Vyverman,et al.  The power of species sorting: Local factors drive bacterial community composition over a wide range of spatial scales , 2007, Proceedings of the National Academy of Sciences.

[15]  Lucas J Stal,et al.  Colorful niches of phototrophic microorganisms shaped by vibrations of the water molecule , 2007, The ISME Journal.

[16]  R. Knight,et al.  Global patterns in bacterial diversity , 2007, Proceedings of the National Academy of Sciences.

[17]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[18]  M. Hahn,et al.  High predictability of the seasonal dynamics of a species-like Polynucleobacter population in a freshwater lake. , 2006, Environmental microbiology.

[19]  G. Zwart,et al.  Bacterioplankton Community Composition along a Salinity Gradient of Sixteen High-Mountain Lakes Located on the Tibetan Plateau, China , 2006, Applied and Environmental Microbiology.

[20]  M. Hahn,et al.  Differences in structure and dynamics of Polynucleobacter communities in a temperate and a subtropical lake, revealed at three phylogenetic levels. , 2006, FEMS microbiology ecology.

[21]  R. De Wit,et al.  'Everything is everywhere, but, the environment selects'; what did Baas Becking and Beijerinck really say? , 2006, Environmental microbiology.

[22]  H. Haario,et al.  Effect of Nutrient Loading on Bacterioplankton Community Composition in Lake Mesocosms , 2006, Microbial Ecology.

[23]  R. B. Jackson,et al.  The diversity and biogeography of soil bacterial communities. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[24]  G. Zwart,et al.  Distribution of Typical Freshwater Bacterial Groups Is Associated with pH, Temperature, and Lake Water Retention Time , 2005, Applied and Environmental Microbiology.

[25]  Stephen R. Carpenter,et al.  ECOSYSTEM SUBSIDIES: TERRESTRIAL SUPPORT OF AQUATIC FOOD WEBS FROM 13C ADDITION TO CONTRASTING LAKES , 2005 .

[26]  M. Hahn,et al.  Low Intraspecific Diversity in a Polynucleobacter Subcluster Population Numerically Dominating Bacterioplankton of a Freshwater Pond , 2005, Applied and Environmental Microbiology.

[27]  H. Karjalainen,et al.  Effect of humic material on the bacterioplankton community composition in boreal lakes and mesocosms. , 2005, Environmental microbiology.

[28]  Eric W. Triplett,et al.  Geographic and Environmental Sources of Variation in Lake Bacterial Community Composition , 2005, Applied and Environmental Microbiology.

[29]  A. Eiler,et al.  Composition of freshwater bacterial communities associated with cyanobacterial blooms in four Swedish lakes. , 2004, Environmental microbiology.

[30]  P. Stadler,et al.  The filtration-acclimatization method for isolation of an important fraction of the not readily cultivable bacteria. , 2004, Journal of microbiological methods.

[31]  H. Kitazato,et al.  Vertical and temporal shifts in microbial communities in the water column and sediment of saline meromictic Lake Kaiike (Japan), as determined by a 16S rDNA-based analysis, and related to physicochemical gradients. , 2004, Environmental microbiology.

[32]  S. Carpenter,et al.  Whole-lake carbon-13 additions reveal terrestrial support of aquatic food webs , 2004, Nature.

[33]  J. Pernthaler,et al.  Members of a Readily Enriched β-Proteobacterial Clade Are Common in Surface Waters of a Humic Lake , 2003, Applied and Environmental Microbiology.

[34]  M. Hahn Isolation of Strains Belonging to the Cosmopolitan Polynucleobacter necessarius Cluster from Freshwater Habitats Located in Three Climatic Zones , 2003, Applied and Environmental Microbiology.

[35]  David R. Anderson,et al.  Model selection and multimodel inference : a practical information-theoretic approach , 2003 .

[36]  G. Kling,et al.  Bacterioplankton Community Shifts in an Arctic Lake Correlate with Seasonal Changes in Organic Matter Source , 2003, Applied and Environmental Microbiology.

[37]  Eric R. Ziegel,et al.  An Introduction to Generalized Linear Models , 2002, Technometrics.

[38]  F. Hagen,et al.  Typical freshwater bacteria: an analysis of available 16S rRNA gene sequences from plankton of lakes and rivers , 2002 .

[39]  L. Meester,et al.  Contrasting bacterioplankton community composition and seasonal dynamics in two neighbouring hypertrophic freshwater lakes. , 2001, Environmental microbiology.

[40]  Rudolf Amann,et al.  Comparative 16S rRNA Analysis of Lake Bacterioplankton Reveals Globally Distributed Phylogenetic Clusters Including an Abundant Group of Actinobacteria , 2000, Applied and Environmental Microbiology.

[41]  E. Lindström Bacterioplankton Community Composition in Five Lakes Differing in Trophic Status and Humic Content , 2000, Microbial Ecology.

[42]  R. Amann,et al.  Bacterioplankton Compositions of Lakes and Oceans: a First Comparison Based on Fluorescence In Situ Hybridization , 1999, Applied and Environmental Microbiology.

[43]  Edward McCauley,et al.  Patterns in phytoplankton taxonomic composition across temperate lakes of differing nutrient status , 1997 .

[44]  Mary Ann Moran,et al.  Photochemical release of biologically available nitrogen from aquatic dissolved organic matter , 1996, Nature.

[45]  H. Berger,et al.  A user‐friendly guide to the ciliates (Protozoa, Ciliophora) commonly used by hydrobiologists as bioindicators in rivers, lakes, and waste waters, with notes on their ecology , 1996 .

[46]  G. Muyzer,et al.  Phylogenetic relationships ofThiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments , 1995, Archives of Microbiology.

[47]  V. Lund,et al.  Ultraviolet irradiated water containing humic substances inhibits bacterial metabolism , 1994 .

[48]  I. Sundh Biochemical Composition of Dissolved Organic Carbon Derived from Phytoplankton and Used by Heterotrophic Bacteria , 1992, Applied and environmental microbiology.

[49]  L. Tranvik Allochthonous dissolved organic matter as an energy source for pelagic bacteria and the concept of the microbial loop , 1992, Hydrobiologia.

[50]  D. Stoecker,et al.  An experimentally determined carbon : volume ratio for marine “oligotrichous” ciliates from estuarine and coastal waters , 1989 .

[51]  D. Caron Technique for Enumeration of Heterotrophic and Phototrophic Nanoplankton, Using Epifluorescence Microscopy, and Comparison with Other Procedures , 1983, Applied and environmental microbiology.

[52]  Tom Fenchel,et al.  Bacteria and Mineral Cycling. , 1981 .

[53]  Keiji Watanabe,et al.  Effective isolation of bacterioplankton genus Polynucleobacter from freshwater environments grown on photochemically degraded dissolved organic matter. , 2009, FEMS microbiology ecology.

[54]  E. K. Kemsley,et al.  PCR-Denaturing Gradient Gel Electrophoresis of Complex Microbial Communities: A Two-Step Approach to Address the Effect of Gel-to-Gel Variation and Allow Valid Comparisons Across a Large Dataset , 2009, Microbial Ecology.

[55]  P. Legendre,et al.  vegan : Community Ecology Package. R package version 1.8-5 , 2007 .

[56]  T. Nagata The trophic transfer via a picoplankton-flagellate-copepod food chain during a picocyanobacterial bloom in Lake Biwa , 1996 .

[57]  A. Geller Degradability of dissolved organic lake water compounds in cultures of natural bacterial communities , 1983 .

[58]  J. G. Field,et al.  The Ecological Role of Water-Column Microbes in the Sea* , 1983 .

[59]  J. Strickland A practical hand-book of seawater analysis , 1972 .

[60]  T. Parsons,et al.  A practical handbook of seawater analysis , 1968 .