Thermodynamic and structural characterization of Asn and Ala residues in the disallowed II′ region of the Ramachandran plot
暂无分享,去创建一个
Luis Serrano | L. Serrano | Jose C. Martínez | M. C. Vega | M. Cristina Vega | Jose C. Martínez | M. Vega
[1] V. Muñoz,et al. Elucidating the folding problem of helical peptides using empirical parameters. II. Helix macrodipole effects and rational modification of the helical content of natural peptides. , 1995, Journal of molecular biology.
[2] J. Thornton,et al. Analysis and prediction of the different types of β-turn in proteins , 1988 .
[3] A. Ortiz,et al. 1H and 15N NMR assignment and solution structure of the SH3 domain of spectrin: Comparison of unrefined and refined structure sets with the crystal structure , 1997, Journal of biomolecular NMR.
[4] B. L. Sibanda,et al. Conformation of beta-hairpins in protein structures. A systematic classification with applications to modelling by homology, electron density fitting and protein engineering. , 1989, Journal of molecular biology.
[5] C. Cambillau,et al. TOM: a FRODO subpackage for protein-ligand fitting with interactive energy minimization , 1988 .
[6] L. Delbaere,et al. The 2.0-A resolution structure of Escherichia coli histidine-containing phosphocarrier protein HPr. A redetermination. , 1994, The Journal of biological chemistry.
[7] Luis Serrano,et al. The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved , 1999, Nature Structural Biology.
[8] J. Thornton,et al. A revised set of potentials for β‐turn formation in proteins , 1994 .
[9] L Serrano,et al. The order of secondary structure elements does not determine the structure of a protein but does affect its folding kinetics. , 1995, Journal of molecular biology.
[10] B. Honig,et al. Free energy determinants of secondary structure formation: III. beta-turns and their role in protein folding. , 1996, Journal of molecular biology.
[11] L. Delbaere,et al. Active-centre torsion-angle strain revealed in 1.6 Å-resolution structure of histidine-containing phosphocarrier protein , 1993, Nature.
[12] U. Hobohm,et al. Selection of representative protein data sets , 1992, Protein science : a publication of the Protein Society.
[13] S. Steinbacher,et al. β‐Turn propensities as paradigms for the analysis of structural motifs to engineer protein stability , 1997, Protein science : a publication of the Protein Society.
[14] Andrea Musacchio,et al. Crystal structure of a Src-homology 3 (SH3) domain , 1992, Nature.
[15] P. V. von Hippel,et al. Calculation of protein extinction coefficients from amino acid sequence data. , 1989, Analytical biochemistry.
[16] G Vriend,et al. WHAT IF: a molecular modeling and drug design program. , 1990, Journal of molecular graphics.
[17] A. Fersht,et al. Principles of protein stability derived from protein engineering experiments , 1993 .
[18] L Serrano,et al. Thermodynamic and kinetic analysis of the SH3 domain of spectrin shows a two-state folding transition. , 1994, Biochemistry.
[19] V. Muñoz,et al. Intrinsic secondary structure propensities of the amino acids, using statistical ϕ–ψ matrices: Comparison with experimental scales , 1994 .
[20] A. Fersht,et al. Protein stability as a function of denaturant concentration: the thermal stability of barnase in the presence of urea. , 1995, Biochemistry.
[21] K. Gunasekaran,et al. Disallowed Ramachandran conformations of amino acid residues in protein structures. , 1996, Journal of molecular biology.
[22] G. N. Ramachandran,et al. Conformation of polypeptides and proteins. , 1968, Advances in protein chemistry.
[23] J. Navaza,et al. AMoRe: an automated package for molecular replacement , 1994 .
[24] A. Brunger. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures. , 1992 .
[25] J. Thornton,et al. AQUA and PROCHECK-NMR: Programs for checking the quality of protein structures solved by NMR , 1996, Journal of biomolecular NMR.
[26] D. Shortle,et al. Evidence for strained interactions between side-chains and the polypeptide backbone. , 1994, Journal of molecular biology.
[27] L. Serrano,et al. Obligatory steps in protein folding and the conformational diversity of the transition state , 1998, Nature Structural &Molecular Biology.
[28] L. Serrano,et al. Non-native local interactions in protein folding and stability: introducing a helical tendency in the all beta-sheet alpha-spectrin SH3 domain. , 1997, Journal of molecular biology.
[29] R. Saiki,et al. A general method of in vitro preparation and specific mutagenesis of DNA fragments: study of protein and DNA interactions. , 1988, Nucleic acids research.