Functional nanoprobes for ultrasensitive detection of biomolecules.

There has been great interest in developing new nucleic acid and protein detection methods for both clinical and numerous non-clinical applications. In a long-lasting effort to improve the detection ability of bioassays, functional nanomaterials have been actively explored to greatly enhance the sensitivity during the last two decades. This tutorial review focuses on recent progress in biosensor development by exploiting several unique optical, electronic and catalytic properties of a range of nanomaterials, such as gold nanoparticles, quantum dots, silicon nanowires, carbon nanotubes and graphene. In addition, a perspective on new opportunities offered by emerging technologies (e.g. DNA nanotechnology) is provided.

[1]  J. E. Mattson,et al.  A Group-IV Ferromagnetic Semiconductor: MnxGe1−x , 2002, Science.

[2]  Huixiang Li,et al.  Colorimetric detection of DNA sequences based on electrostatic interactions with unmodified gold nanoparticles. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[3]  A. Heeger,et al.  Beyond superquenching: Hyper-efficient energy transfer from conjugated polymers to gold nanoparticles , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[4]  Z. Tian,et al.  Gating of Redox Currents at Gold Nanoelectrodes via DNA Hybridization , 2010, Advanced materials.

[5]  A. Libchaber,et al.  Single-mismatch detection using gold-quenched fluorescent oligonucleotides , 2001, Nature Biotechnology.

[6]  Colin D. Medley,et al.  Molecular engineering of DNA: molecular beacons. , 2009, Angewandte Chemie.

[7]  Igor L. Medintz,et al.  Quantum dot bioconjugates for imaging, labelling and sensing , 2005, Nature materials.

[8]  H. Klocker,et al.  Nanoparticle-based bio-barcode assay redefines “undetectable” PSA and biochemical recurrence after radical prostatectomy , 2009, Proceedings of the National Academy of Sciences.

[9]  Gengfeng Zheng,et al.  Multiplexed electrical detection of cancer markers with nanowire sensor arrays , 2005, Nature Biotechnology.

[10]  Ronghua Yang,et al.  Carbon nanotube-quenched fluorescent oligonucleotides: probes that fluoresce upon hybridization. , 2008, Journal of the American Chemical Society.

[11]  Yi Zhang,et al.  MS-qFRET: a quantum dot-based method for analysis of DNA methylation. , 2009, Genome research.

[12]  Itamar Willner,et al.  Nucleic acid-functionalized Pt nanoparticles: Catalytic labels for the amplified electrochemical detection of biomolecules. , 2006, Analytical chemistry.

[13]  C. Mirkin,et al.  Scanometric DNA array detection with nanoparticle probes. , 2000, Science.

[14]  Zhanfang Ma,et al.  Naked-eye sensitive detection of immunoglubulin G by enlargement of Au nanoparticles in vitro. , 2002, Angewandte Chemie.

[15]  Martin Moskovits,et al.  Surface-enhanced Raman spectroscopy for DNA detection by nanoparticle assembly onto smooth metal films. , 2007, Journal of the American Chemical Society.

[16]  Huang-Hao Yang,et al.  A graphene platform for sensing biomolecules. , 2009, Angewandte Chemie.

[17]  D. Balding,et al.  HLA Sequence Polymorphism and the Origin of Humans , 2006 .

[18]  C. Mirkin,et al.  Array-Based Electrical Detection of DNA with Nanoparticle Probes , 2002, Science.

[19]  C. Lieber,et al.  Nanowire Nanosensors for Highly Sensitive and Selective Detection of Biological and Chemical Species , 2001, Science.

[20]  David Erickson,et al.  Surface-enhanced Raman scattering based ligase detection reaction. , 2009, Journal of the American Chemical Society.

[21]  Filip Braet,et al.  Carbon nanomaterials in biosensors: should you use nanotubes or graphene? , 2010, Angewandte Chemie.

[22]  Xiaofang Hu,et al.  Unmodified gold nanoparticles as a colorimetric probe for potassium DNA aptamers. , 2006, Chemical communications.

[23]  W. Smith,et al.  Control of enhanced Raman scattering using a DNA-based assembly process of dye-coded nanoparticles. , 2008, Nature nanotechnology.

[24]  Weiyang Li,et al.  Dimers of silver nanospheres: facile synthesis and their use as hot spots for surface-enhanced Raman scattering. , 2009, Nano letters.

[25]  C. Mirkin,et al.  Nanoparticle-based detection in cerebral spinal fluid of a soluble pathogenic biomarker for Alzheimer's disease. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[26]  E. Tu,et al.  Label-free detection of DNA hybridization using carbon nanotube network field-effect transistors. , 2006, Proceedings of the National Academy of Sciences of the United States of America.

[27]  J. Storhoff,et al.  A DNA-based method for rationally assembling nanoparticles into macroscopic materials , 1996, Nature.

[28]  Chunhai Fan,et al.  A nano- and micro- integrated protein chip based on quantum dot probes and a microfluidic network , 2008 .

[29]  H. Yeh,et al.  Single-quantum-dot-based DNA nanosensor , 2005, Nature materials.

[30]  Chunhai Fan,et al.  Enzyme‐Based Multi‐Component Optical Nanoprobes for Sequence‐ Specific Detection of DNA Hybridization , 2008 .

[31]  Chunhai Fan,et al.  Sequence-specific detection of femtomolar DNA via a chronocoulometric DNA sensor (CDS): effects of nanoparticle-mediated amplification and nanoscale control of DNA assembly at electrodes. , 2006, Journal of the American Chemical Society.

[32]  Lain-Jong Li,et al.  Interfacing glycosylated carbon-nanotube-network devices with living cells to detect dynamic secretion of biomolecules. , 2009, Angewandte Chemie.

[33]  Steven R. Emory,et al.  Probing Single Molecules and Single Nanoparticles by Surface-Enhanced Raman Scattering , 1997, Science.

[34]  Samuel K Sia,et al.  An integrated approach to a portable and low-cost immunoassay for resource-poor settings. , 2004, Angewandte Chemie.

[35]  N. Mohanty,et al.  Graphene-based single-bacterium resolution biodevice and DNA transistor: interfacing graphene derivatives with nanoscale and microscale biocomponents. , 2008, Nano letters.

[36]  Sang Yup Lee,et al.  Patterned multiplex pathogen DNA detection by Au particle-on-wire SERS sensor. , 2010, Nano letters.

[37]  Chad A. Mirkin,et al.  Drivers of biodiagnostic development , 2009, Nature.

[38]  Chunhai Fan,et al.  A Graphene Nanoprobe for Rapid, Sensitive, and Multicolor Fluorescent DNA Analysis , 2010 .

[39]  Joseph Wang,et al.  Ultrasensitive electrical biosensing of proteins and DNA: carbon-nanotube derived amplification of the recognition and transduction events. , 2004, Journal of the American Chemical Society.

[40]  Chad A Mirkin,et al.  Aptamer nano-flares for molecular detection in living cells. , 2009, Nano letters.

[41]  C. Mirkin,et al.  Nanoparticle-Based Bio-Bar Codes for the Ultrasensitive Detection of Proteins , 2003, Science.

[42]  S. Nie,et al.  In vivo cancer targeting and imaging with semiconductor quantum dots , 2004, Nature Biotechnology.

[43]  C. Fan,et al.  Ultrasensitive, multiplexed detection of cancer biomarkers directly in serum by using a quantum dot-based microfluidic protein chip. , 2010, ACS nano.

[44]  Juewen Liu,et al.  Functional nucleic acid sensors. , 2009, Chemical reviews.

[45]  C. Mirkin,et al.  Nanoparticles with Raman spectroscopic fingerprints for DNA and RNA detection. , 2002, Science.

[46]  Chad A Mirkin,et al.  Nanostructures in biodiagnostics. , 2005, Chemical reviews.

[47]  Hongyuan Chen,et al.  Opto-magnetic interaction between electrochemiluminescent CdS : Mn film and Fe3O4 nanoparticles and its application to immunosensing. , 2010, Chemical communications.

[48]  Hua Zhang,et al.  Aptamer-based multicolor fluorescent gold nanoprobes for multiplex detection in homogeneous solution. , 2010, Small.

[49]  Robert Wilson The use of gold nanoparticles in diagnostics and detection. , 2008, Chemical Society reviews.

[50]  Zhivko Zhelev,et al.  Quantum dot-based western blot technology for ultrasensitive detection of tracer proteins. , 2005, Journal of the American Chemical Society.

[51]  Jun Liu,et al.  Glucose biosensor based on immobilization of glucose oxidase in platinum nanoparticles/graphene/chitosan nanocomposite film. , 2009, Talanta.

[52]  Jing-Juan Xu,et al.  Distance-dependent quenching and enhancing of electrochemiluminescence from a CdS:Mn nanocrystal film by Au nanoparticles for highly sensitive detection of DNA. , 2009, Chemical communications.

[53]  Lulu Qian,et al.  Asymmetric DNA Origami for Spatially Addressable and Index‐Free Solution‐Phase DNA Chips , 2010, Advanced materials.

[54]  S. Nie,et al.  Self-assembled nanoparticle probes for recognition and detection of biomolecules. , 2002, Journal of the American Chemical Society.

[55]  Chunhai Fan,et al.  Gold-nanoparticle-based multicolor nanobeacons for sequence-specific DNA analysis. , 2009, Angewandte Chemie.

[56]  M. Shim,et al.  Noncovalent functionalization of carbon nanotubes for highly specific electronic biosensors , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[57]  Shana O Kelley,et al.  Programming the detection limits of biosensors through controlled nanostructuring. , 2009, Nature nanotechnology.

[58]  Charles M. Lieber,et al.  Direct ultrasensitive electrical detection of DNA and DNA sequence variations using nanowire nanosensors , 2004 .

[59]  Gengfeng Zheng,et al.  Electrical detection of single viruses. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[60]  Joseph D. Gong,et al.  Carbon nanotube amplification strategies for highly sensitive immunodetection of cancer biomarkers. , 2006, Journal of the American Chemical Society.

[61]  Guodong Liu,et al.  Multiple enzyme layers on carbon nanotubes for electrochemical detection down to 80 DNA copies. , 2005, Analytical chemistry.

[62]  Hao Yan,et al.  Self-Assembled Water-Soluble Nucleic Acid Probe Tiles for Label-Free RNA Hybridization Assays , 2008, Science.

[63]  Henrik H. J. Persson,et al.  DNA nanomechanics allows direct digital detection of complementary DNA and microRNA targets , 2009, Nature.