Full-length title: NRPPUR database search and in vitro analysis identify an NRPS-PKS biosynthetic gene cluster with a potential antibiotic effect
暂无分享,去创建一个
Jean-Marc Rolain | Didier Raoult | Olivier Chabrol | Shirley Fritz | Andriamiharimamy Rajaonison | Vicky Merhej | D. Raoult | J. Rolain | V. Merhej | O. Chabrol | S. Fritz | Andriamiharimamy Rajaonison | Olivier Chabrol | D. Raoult
[1] Kira J Weissman,et al. The structural biology of biosynthetic megaenzymes. , 2015, Nature chemical biology.
[2] R. Ley,et al. Ecological and Evolutionary Forces Shaping Microbial Diversity in the Human Intestine , 2006, Cell.
[3] Christian Senger,et al. StreptomeDB: a resource for natural compounds isolated from Streptomyces species , 2012, Nucleic Acids Res..
[4] Kyle R. Conway,et al. ClusterMine360: a database of microbial PKS/NRPS biosynthesis , 2012, Nucleic Acids Res..
[5] Bo Yu,et al. CDD/SPARCLE: functional classification of proteins via subfamily domain architectures , 2016, Nucleic Acids Res..
[6] C. Robert,et al. Culture of previously uncultured members of the human gut microbiota by culturomics , 2016, Nature Microbiology.
[7] Mohammad A Al Karaawi,et al. Antimicrobial potential of bacteriocins: in therapy, agriculture and food preservation. , 2017, International journal of antimicrobial agents.
[8] A. Grossman,et al. srfA is an operon required for surfactin production, competence development, and efficient sporulation in Bacillus subtilis , 1991, Journal of bacteriology.
[9] K. Lewis,et al. Antibiotics: Recover the lost art of drug discovery , 2012, Nature.
[10] P. Leadlay,et al. An unusually large multifunctional polypeptide in the erythromycin-producing polyketide synthase of Saccharopolyspora erythraea , 1990, Nature.
[11] Gerard D. Wright. The antibiotic resistome: the nexus of chemical and genetic diversity , 2007, Nature Reviews Microbiology.
[12] S. Shivaji,et al. Antagonistic interaction networks among bacteria from a cold soil environment. , 2011, FEMS microbiology ecology.
[13] Robert D. Finn,et al. HMMER web server: interactive sequence similarity searching , 2011, Nucleic Acids Res..
[14] C. Fuqua,et al. Bacterial competition: surviving and thriving in the microbial jungle , 2010, Nature Reviews Microbiology.
[15] Nobuyuki Fujita,et al. DoBISCUIT: a database of secondary metabolite biosynthetic gene clusters , 2012, Nucleic Acids Res..
[16] Kai Blin,et al. antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..
[17] Chaitan Khosla,et al. Revisiting the modularity of modular polyketide synthases. , 2009, Current opinion in chemical biology.
[18] Didier Raoult,et al. Common occurrence of antibacterial agents in human intestinal microbiota , 2015, Front. Microbiol..
[19] M. Willmann,et al. Human commensals producing a novel antibiotic impair pathogen colonization , 2016, Nature.
[20] M. Marahiel,et al. Nonribosomal peptides: from genes to products. , 2003, Natural product reports.
[21] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[22] J B McAlpine,et al. Modular organization of genes required for complex polyketide biosynthesis. , 1991, Science.
[23] C. Robert,et al. Culturomics identified 11 new bacterial species from a single anorexia nervosa stool sample , 2013, European Journal of Clinical Microbiology & Infectious Diseases.
[24] Michael A. Skinnider,et al. Genomes to natural products PRediction Informatics for Secondary Metabolomes (PRISM) , 2015, Nucleic acids research.
[25] I. Hoof,et al. CLUSEAN: a computer-based framework for the automated analysis of bacterial secondary metabolite biosynthetic gene clusters. , 2009, Journal of biotechnology.
[26] G. Youmans,et al. Plate Methods for Testing Antibiotic Activity of Actinomycetes against Virulent Human Type Tubercle Bacilli , 1947, Journal of bacteriology.
[27] K. Katoh,et al. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability , 2013, Molecular biology and evolution.
[28] Gitanjali Yadav,et al. NRPS-PKS: a knowledge-based resource for analysis of NRPS/PKS megasynthases , 2004, Nucleic Acids Res..
[29] Liisa Holm,et al. Atlas of nonribosomal peptide and polyketide biosynthetic pathways reveals common occurrence of nonmodular enzymes , 2014, Proceedings of the National Academy of Sciences.
[30] M. Lertcanawanichakul,et al. A Comparison of Two Methods Used for Measuring the Antagonistic Activity of Bacillus Species , 2011 .
[31] Kai Blin,et al. antiSMASH 3.0—a comprehensive resource for the genome mining of biosynthetic gene clusters , 2015, Nucleic Acids Res..
[32] Rick L. Stevens,et al. The RAST Server: Rapid Annotations using Subsystems Technology , 2008, BMC Genomics.
[33] I. Gould,et al. New antibiotic agents in the pipeline and how they can help overcome microbial resistance , 2013, Virulence.
[34] Chao Xie,et al. Fast and sensitive protein alignment using DIAMOND , 2014, Nature Methods.
[35] Elke Dittmann,et al. Bioinformatic perspectives on NRPS/PKS megasynthases: advances and challenges. , 2009, Natural product reports.
[36] David L. Wheeler,et al. GenBank , 2015, Nucleic Acids Res..
[37] S. Levy,et al. Molecular Mechanisms of Antibacterial Multidrug Resistance , 2007, Cell.
[38] Li-Kwan Chang,et al. Functional and Transcriptional Analyses of a Fengycin Synthetase Gene, fenC, from Bacillus subtilis , 1999, Journal of bacteriology.
[39] J. Zucko,et al. ClustScan: an integrated program package for the semi-automatic annotation of modular biosynthetic gene clusters and in silico prediction of novel chemical structures , 2008, Nucleic acids research.
[40] E. Brown,et al. Antibacterial drug discovery in the resistance era , 2016, Nature.
[41] J. Bartlett,et al. Bad bugs, no drugs: no ESKAPE! An update from the Infectious Diseases Society of America. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[42] Kai Blin,et al. antiSMASH 2.0—a versatile platform for genome mining of secondary metabolite producers , 2013, Nucleic Acids Res..
[43] J. Buysse. The role of genomics in antibacterial target discovery. , 2001, Current medicinal chemistry.
[44] P. Selzer,et al. Target-based drug discovery for the development of novel antiinfectives. , 2000, International journal of medical microbiology : IJMM.
[45] Corie Lok,et al. Mining the microbial dark matter , 2015, Nature.