Iterative read mapping and assembly allows the use of a more distant reference in metagenome assembly
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Bas E. Dutilh | Martijn A. Huynen | Jolein Gloerich | Marc Strous | M. Huynen | M. Strous | B. Dutilh | J. Gloerich
[1] E. Birney,et al. Velvet: algorithms for de novo short read assembly using de Bruijn graphs. , 2008, Genome research.
[2] Bas E. Dutilh,et al. Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly , 2009, Bioinform..
[3] Nancy F. Hansen,et al. Accurate Whole Human Genome Sequencing using Reversible Terminator Chemistry , 2008, Nature.
[4]
R. Durbin,et al.
Mapping Quality Scores Mapping Short Dna Sequencing Reads and Calling Variants Using P ,
2022
.
[5]
D. Bentley,et al.
Whole-genome re-sequencing.
,
2006,
Current opinion in genetics & development.
[6]
S. Giovannoni,et al.
The uncultured microbial majority.
,
2003,
Annual review of microbiology.
[7]
Georges N. Cohen,et al.
“Candidatus Cloacamonas Acidaminovorans”: Genome Sequence Reconstruction Provides a First Glimpse of a New Bacterial Division
,
2008,
Journal of bacteriology.
[8]
O. White,et al.
Environmental Genome Shotgun Sequencing of the Sargasso Sea
,
2004,
Science.
[9]
Mike S. M. Jetten,et al.
Enrichment and Molecular Detection of Denitrifying Methanotrophic Bacteria of the NC10 Phylum
,
2009,
Applied and Environmental Microbiology.
[10]
J. V. Moran,et al.
Initial sequencing and analysis of the human genome.
,
2001,
Nature.
[11]
Paul Wilmes,et al.
The dynamic genetic repertoire of microbial communities
,
2009,
FEMS microbiology reviews.
[12]
Marnix H Medema,et al.
Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea.
,
2008,
Environmental microbiology.
[13]
Ming L. Wu,et al.
Nitrite-driven anaerobic methane oxidation by oxygenic bacteria
,
2010,
Nature.
[14]
E. Myers,et al.
Basic local alignment search tool.
,
1990,
Journal of molecular biology.
[15]
E. Mardis.
Next-generation DNA sequencing methods.
,
2008,
Annual review of genomics and human genetics.
[16]
Lukas Wagner,et al.
A Greedy Algorithm for Aligning DNA Sequences
,
2000,
J. Comput. Biol..
[17]
A. Cornish-Bowden.
Nomenclature for incompletely specified bases in nucleic acid sequences: recommendations 1984.
,
1985,
Nucleic acids research.
[18]
Steven Salzberg,et al.
Gene-Boosted Assembly of a Novel Bacterial Genome from Very Short Reads
,
2008,
PLoS Comput. Biol..