The Proteome of a Healthy Human during Physical Activity under Extreme Conditions
暂无分享,去创建一个
V. A. Ivanisenko | E. N. Nikolaev | V. Ivanisenko | E. Nikolaev | I. Larina | A. Grigorev | I. M. Larina | A. I. Grigorev | Irina M. Larina | E. N. Nikolaev
[1] S. Kandarian,et al. The molecular basis of skeletal muscle atrophy. , 2004, American journal of physiology. Cell physiology.
[2] M. Mann,et al. Electrospray ionization for mass spectrometry of large biomolecules. , 1989, Science.
[3] John D Aitchison,et al. Systems biology at the Institute for Systems Biology. , 2008, Briefings in functional genomics & proteomics.
[4] Hannes Hettling,et al. Simulating the physiology of athletes during endurance sports events: modelling human energy conversion and metabolism , 2011, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[5] Martin Kircher,et al. Deep proteome and transcriptome mapping of a human cancer cell line , 2011, Molecular systems biology.
[6] M. Custaud,et al. Enforced physical inactivity increases endothelial microparticle levels in healthy volunteers. , 2010, American journal of physiology. Heart and circulatory physiology.
[7] Yvonne Neudorf,et al. The International Space Station , 2005 .
[8] C. V. Suresh Babu,et al. Modeling and simulation in signal transduction pathways: a systems biology approach. , 2006, Biochimie.
[9] B. Palsson,et al. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions , 2010, Molecular systems biology.
[10] M. V. Regenmortel,et al. Reductionism and complexity in molecular biology , 2004, HIV/AIDS: Immunochemistry, Reductionism and Vaccine Design.
[11] Mark Gerstein,et al. The human proteome – a scientific opportunity for transforming diagnostics, therapeutics, and healthcare , 2012, Clinical Proteomics.
[12] Vladimir A. Ivanisenko,et al. Detection of Renal Tissue and Urinary Tract Proteins in the Human Urine after Space Flight , 2013, PloS one.
[13] D. Glass,et al. Molecular mechanisms modulating muscle mass. , 2003, Trends in molecular medicine.
[14] Robert K. Murray,et al. Harper's Illustrated Biochemistry , 2003 .
[15] Understanding the Human Brain , 2011, Science.
[16] G. Maksimov,et al. Development of cell hypoxia induced by factors of long-term spaceflight , 2008, Doklady Biochemistry and Biophysics.
[17] Feilim Mac Gabhann,et al. Systems biology of pro‐angiogenic therapies targeting the VEGF system , 2010, Wiley interdisciplinary reviews. Systems biology and medicine.
[18] Ines Thiele,et al. Applying systems biology methods to the study of human physiology in extreme environments , 2013, Extreme Physiology & Medicine.
[19] B. Palsson,et al. A protocol for generating a high-quality genome-scale metabolic reconstruction , 2010 .
[20] V. Pochuev,et al. Mechanisms of changes in human hemodynamics under the conditions of microgravity and prognosis of postflight orthostatic stability , 2008, Human Physiology.
[21] Nour Shublaq,et al. Patient‐Specific Modelling in Drug Design, Development and Selection Including its Role in Clinical Decision‐Making , 2013, Chemical biology & drug design.
[22] B. Garcia,et al. Proteomics , 2011, Journal of biomedicine & biotechnology.
[23] Jonathan Bard,et al. Systems Biology — the Broader Perspective , 2013, Cells.
[24] Christian Gieger,et al. A genome-wide association study of metabolic traits in human urine , 2011, Nature Genetics.
[25] W. N. Burnette,et al. "Western blotting": electrophoretic transfer of proteins from sodium dodecyl sulfate--polyacrylamide gels to unmodified nitrocellulose and radiographic detection with antibody and radioiodinated protein A. , 1981, Analytical biochemistry.
[26] C. Harris,et al. Oxidative stress, thiols, and redox profiles. , 2012, Methods in molecular biology.
[27] T. Ideker,et al. A new approach to decoding life: systems biology. , 2001, Annual review of genomics and human genetics.
[28] C Drummer,et al. Water and sodium balance in space. , 2001, American journal of kidney diseases : the official journal of the National Kidney Foundation.
[29] Z. Oltvai,et al. Molecular Crowding Defines a Common Origin for the Warburg Effect in Proliferating Cells and the Lactate Threshold in Muscle Physiology , 2011, PloS one.
[30] P. S. Demenkov,et al. Reconstruction of associative protein networks connected with processes of sodium exchange regulation and sodium deposition in healthy volunteers based on urine proteome analysis , 2012, Human Physiology.
[31] H. Kitano. Systems Biology: A Brief Overview , 2002, Science.
[32] Christian Gieger,et al. A genome-wide perspective of genetic variation in human metabolism , 2010, Nature Genetics.
[33] Bernhard O. Palsson,et al. The human metabolic reconstruction Recon 1 directs hypotheses of novel human metabolic functions , 2011, BMC Systems Biology.
[34] Gary D Bader,et al. A Combined Experimental and Computational Strategy to Define Protein Interaction Networks for Peptide Recognition Modules , 2001, Science.
[35] Christopher J. Schofield,et al. Hypoxia-dependent sequestration of an oxygen sensor by a widespread structural motif can shape the hypoxic response - a predictive kinetic model , 2010, BMC Systems Biology.
[36] Johannes Stadlmann,et al. A multi-level study of recombinant Pichia pastoris in different oxygen conditions , 2010, BMC Systems Biology.
[37] Aarash Bordbar,et al. A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology , 2011, BMC Systems Biology.
[38] Josep Roca,et al. A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease , 2011, PLoS Comput. Biol..
[39] Ruedi Aebersold,et al. New and improved proteomics technologies for understanding complex biological systems: Addressing a grand challenge in the life sciences , 2012, Proteomics.
[40] K. Nakanishi,et al. Proteomic analysis of the lung in rats with hypobaric hypoxia-induced pulmonary hypertension. , 2013, Histology and Histopathology.
[41] Dean P. Jones,et al. Extracellular redox state: refining the definition of oxidative stress in aging. , 2006, Rejuvenation research.
[42] R. Baevsky,et al. Autonomic cardiovascular and respiratory control during prolonged spaceflights aboard the International Space Station. , 2007, Journal of applied physiology.
[43] T. Kojima,et al. Gene Network Analysis to Determine the Effects of Antioxidant Treatment in a Rat Model of Neonatal Hypoxic-Ischemic Encephalopathy , 2010, Journal of Molecular Neuroscience.
[44] Lingchong You,et al. Toward computational systems biology , 2007, Cell Biochemistry and Biophysics.
[45] A. Murray. Metabolic adaptation of skeletal muscle to high altitude hypoxia: how new technologies could resolve the controversies , 2009, Genome Medicine.
[46] P. O’Farrell. High resolution two-dimensional electrophoresis of proteins. , 1975, The Journal of biological chemistry.
[47] A. Tonevitsky,et al. Dynamically regulated miRNA-mRNA networks revealed by exercise , 2013, BMC Physiology.
[48] N. Sharma,et al. Identification of haptoglobin and apolipoprotein A-I as biomarkers for high altitude pulmonary edema , 2011, Functional & Integrative Genomics.
[49] P. Cerretelli,et al. Proteins modulation in human skeletal muscle in the early phase of adaptation to hypobaric hypoxia , 2008, Proteomics.
[50] I. Larina,et al. Study of Temperature Homeostasis in Real and Simulated Weightlessness , 2002, Human Physiology.
[51] D. Noble,et al. Systems Biology: An Approach , 2010, Clinical pharmacology and therapeutics.
[52] P. James,et al. Protein identification in the post-genome era: the rapid rise of proteomics , 1997, Quarterly Reviews of Biophysics.
[53] Josep Roca,et al. Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia , 2009, PLoS Comput. Biol..
[54] Monica L. Mo,et al. Global reconstruction of the human metabolic network based on genomic and bibliomic data , 2007, Proceedings of the National Academy of Sciences.
[55] C. Chaufan,et al. The ‘Missing Heritability’ of Common Disorders: Should Health Researchers Care? , 2013, International journal of health services : planning, administration, evaluation.
[56] G. Bajotto,et al. Determinants of disuse-induced skeletal muscle atrophy: exercise and nutrition countermeasures to prevent protein loss. , 2006, Journal of nutritional science and vitaminology.
[57] Giovanni Cesareni,et al. Modular protein domains , 2005 .
[58] Jae-Seong Yang,et al. Construction of functional interaction networks through consensus localization predictions of the human proteome. , 2009, Journal of proteome research.
[59] Alan Garfinkel,et al. Multi-scale modeling in biology: how to bridge the gaps between scales? , 2011, Progress in biophysics and molecular biology.
[60] Fuchu He,et al. LiverAtlas: a unique integrated knowledge database for systems‐level research of liver and hepatic disease , 2013, Liver international : official journal of the International Association for the Study of the Liver.
[61] M. Flueck. Plasticity of the muscle proteome to exercise at altitude. , 2009, High altitude medicine & biology.
[62] B. Palsson,et al. Systems approach to refining genome annotation , 2006, Proceedings of the National Academy of Sciences.
[63] I M Larina,et al. [Identification proteins cardiovascular system in urine healthy subjects during "dry" immersion]. , 2014, Fiziologiia cheloveka.
[64] Michael E Phelps,et al. Systems Biology and New Technologies Enable Predictive and Preventative Medicine , 2004, Science.
[65] W. Schulze,et al. Dynamics of salivary proteins and metabolites during extreme endurance sports – a case study , 2012, Proteomics.
[66] C. Harris,et al. Inhibition of glutathione biosynthesis alters compartmental redox status and the thiol proteome in organogenesis-stage rat conceptuses. , 2013, Free radical biology & medicine.
[67] Hyeong Jun An,et al. Estimating the size of the human interactome , 2008, Proceedings of the National Academy of Sciences.
[68] E. L. Robinson,et al. Gravity and thermoregulation: metabolic changes and circadian rhythms , 2000, Pflügers Archiv.
[69] Daniel W. A. Buchan,et al. A large-scale evaluation of computational protein function prediction , 2013, Nature Methods.
[70] E D Gilles,et al. Reduction of mathematical models of signal transduction networks: simulation-based approach applied to EGF receptor signalling. , 2004, Systems biology.
[71] D. Leibfritz,et al. Free radicals and antioxidants in normal physiological functions and human disease. , 2007, The international journal of biochemistry & cell biology.
[72] Bernhard Pfeifer,et al. Systematic analysis of signaling pathways using an integrative environment. , 2007, Methods of information in medicine.
[73] A. Bordbar,et al. Using the reconstructed genome‐scale human metabolic network to study physiology and pathology , 2012, Journal of internal medicine.
[74] E. Sverdlov,et al. Fundamental taboos of biology , 2009, Biochemistry (Moscow).
[75] Baevskiĭ Rm. Analysis of variability of cardiac rhythm in space medicine , 2002 .
[76] H. Westerhoff. Systems biology left and right. , 2011, Methods in enzymology.
[77] P. Greenhaff,et al. ‘Systems biology’ in human exercise physiology: is it something different from integrative physiology? , 2011, The Journal of physiology.
[78] M. Jamon,et al. Morphological, physiological and behavioural evaluation of a ‘Mice in Space’ housing system , 2009, Journal of Comparative Physiology B.
[79] Madhav V. Marathe,et al. Systems Modeling of Molecular Mechanisms Controlling Cytokine-driven CD4+ T Cell Differentiation and Phenotype Plasticity , 2013, PLoS Comput. Biol..
[80] M. Hargreaves. Fatigue mechanisms determining exercise performance: integrative physiology is systems biology. , 2008, Journal of applied physiology.
[81] I. Kozlovskaya,et al. Alterations of characteristics of horizontal gaze fixation reaction in long-term space flights. , 2007, Journal of gravitational physiology : a journal of the International Society for Gravitational Physiology.
[82] Kiyoko F. Aoki-Kinoshita,et al. From genomics to chemical genomics: new developments in KEGG , 2005, Nucleic Acids Res..
[83] E. Lander. Initial impact of the sequencing of the human genome , 2011, Nature.
[84] Henriette Pilegaard,et al. Exercise induces transient transcriptional activation of the PGC‐1α gene in human skeletal muscle , 2003, The Journal of physiology.
[85] R. Aebersold,et al. Mass spectrometry-based proteomics and network biology. , 2012, Annual review of biochemistry.
[86] PHARMACOPOEIA MONOGRAPH,et al. MINISTRY OF HEALTH OF THE RUSSIAN FEDERATION , 2016 .
[87] A. Lisitsa,et al. Application of 2-DE for studying the variation of blood proteome , 2010, Expert review of proteomics.
[88] Ralf Hofestädt,et al. Subcellular Localization Charts: a New Visual Methodology for the Semi-Automatic Localization of protein-Related Data Sets , 2013, J. Bioinform. Comput. Biol..
[89] I. Naumov,et al. Gaze control and vestibular-cervical-ocular responses after prolonged exposure to microgravity. , 2012, Aviation, space, and environmental medicine.
[90] Jeffrey D. Orth,et al. Systematizing the generation of missing metabolic knowledge , 2010, Biotechnology and bioengineering.
[91] Asan,et al. Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude , 2010, Science.
[92] J. Ellenberg,et al. The quantitative proteome of a human cell line , 2011, Molecular systems biology.
[93] T. P. Stein. Weight, muscle and bone loss during space flight: another perspective , 2012, European Journal of Applied Physiology.
[94] G. Parati,et al. Modulation of urinary peptidome in humans exposed to high altitude hypoxia. , 2012, Molecular bioSystems.
[95] R. Gerzer,et al. Regulation of body fluid and salt homeostasis--from observations in space to new concepts on Earth. , 2005, Current pharmaceutical biotechnology.
[96] P. Fuller,et al. Neurovestibular modulation of circadian and homeostatic regulation: Vestibulohypothalamic connection? , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[97] B. Johannes,et al. Long-term sodium balance in humans in a terrestrial space station simulation study. , 2002, American journal of kidney diseases : the official journal of the National Kidney Foundation.
[98] Denis Noble,et al. Genes and causation , 2008, Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences.
[99] Vinay Satish Kumar,et al. GrowMatch: An Automated Method for Reconciling In Silico/In Vivo Growth Predictions , 2009, PLoS Comput. Biol..
[100] M. Flueck. Myocellular limitations of human performance and their modification through genome‐dependent responses at altitude , 2010, Experimental physiology.
[101] S. Brenner. Sequences and consequences , 2010, Philosophical Transactions of the Royal Society B: Biological Sciences.
[102] Wei Wang,et al. Natural selection on EPAS1 (HIF2α) associated with low hemoglobin concentration in Tibetan highlanders , 2010, Proceedings of the National Academy of Sciences.
[103] Vinay Satish Kumar,et al. Optimization based automated curation of metabolic reconstructions , 2007, BMC Bioinformatics.
[104] A. V. Bryanskaya,et al. Computer analysis of metagenomic data—Pediction of quantitative value of specific activity of proteins , 2012, Doklady Biochemistry and Biophysics.
[105] T. Smirnova,et al. Circadian rhythms of salivary cortisol content during long-term space flight , 2000, Human Physiology.
[106] J. Chen,et al. Unraveling human complexity and disease with systems biology and personalized medicine. , 2010, Personalized medicine.
[107] C. Gille,et al. HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology , 2010, Molecular systems biology.
[108] D. Attaix,et al. Mechanisms of skeletal muscle atrophy , 2006, Current opinion in rheumatology.
[109] Aleksander S Popel,et al. Computational models of VEGF-associated angiogenic processes in cancer. , 2012, Mathematical medicine and biology : a journal of the IMA.
[110] Bruce Alberts,et al. The End of “Small Science”? , 2012, Science.
[111] Benchara Branford,et al. Reviews , 1920 .
[112] Olaf Wolkenhauer,et al. A multi-level model accounting for the effects of JAK2-STAT5 signal modulation in erythropoiesis , 2009, Comput. Biol. Chem..
[113] D. Noble. A biological relativity view of the relationships between genomes and phenotypes. , 2013, Progress in biophysics and molecular biology.
[114] A. Heck,et al. The quantitative proteomes of human-induced pluripotent stem cells and embryonic stem cells , 2011, Molecular systems biology.
[115] A. Posch,et al. Fractionation of complex protein mixtures by liquid-phase isoelectric focusing. , 2008, Methods in molecular biology.
[116] J. Sharman,et al. Metabolomics reveals increased isoleukotoxin diol (12,13-DHOME) in human plasma after acute Intralipid infusion , 2012, Journal of Lipid Research.
[117] O. Blokhina,et al. Oxidative metabolism, ROS and NO under oxygen deprivation. , 2010, Plant physiology and biochemistry : PPB.
[118] Vladimir A. Ivanisenko,et al. ANDVisio: A new tool for graphic visualization and analysis of literature mined associative gene networks in the ANDSystem , 2012, Silico Biol..
[119] Ross P Carlson,et al. Systems analysis of microbial adaptations to simultaneous stresses. , 2012, Sub-cellular biochemistry.
[120] N. Sethy,et al. Comparative proteome analysis reveals differential regulation of glycolytic and antioxidant enzymes in cortex and hippocampus exposed to short-term hypobaric hypoxia. , 2013, Journal of proteomics.
[121] V R Edgerton,et al. Human fiber size and enzymatic properties after 5 and 11 days of spaceflight. , 1995, Journal of applied physiology.
[122] Biplab Bose,et al. Systems biology: a biologist's viewpoint. , 2013, Progress in biophysics and molecular biology.
[123] V R Edgerton,et al. Gravitational unloading effects on muscle fiber size, phenotype and myonuclear number. , 2002, Advances in space research : the official journal of the Committee on Space Research.