Variable repeats in the eukaryotic polyubiquitin gene ubi4 modulate proteostasis and stress survival

[1]  Nobuhiro Nakamura,et al.  Ubiquitin System , 2018, International journal of molecular sciences.

[2]  T. Mayor,et al.  Deubiquitinase activity is required for the proteasomal degradation of misfolded cytosolic proteins upon heat-stress , 2016, Nature Communications.

[3]  Guy Baele,et al.  Domestication and Divergence of Saccharomyces cerevisiae Beer Yeasts , 2006, Cell.

[4]  R. Milo,et al.  Massively Parallel Interrogation of the Effects of Gene Expression Levels on Fitness , 2016, Cell.

[5]  D. Eide,et al.  Activation of the Yeast UBI4 Polyubiquitin Gene by Zap1 Transcription Factor via an Intragenic Promoter Is Critical for Zinc-deficient Growth* , 2016, The Journal of Biological Chemistry.

[6]  Frederic Rousseau,et al.  Variable Glutamine-Rich Repeats Modulate Transcription Factor Activity , 2015, Molecular cell.

[7]  M. Kirschner,et al.  Substrate degradation by the proteasome: A single-molecule kinetic analysis , 2015, Science.

[8]  K. Verstrepen,et al.  Large-Scale Selection and Breeding To Generate Industrial Yeasts with Superior Aroma Production , 2014, Applied and Environmental Microbiology.

[9]  Sander K. Govers,et al.  Different Levels of Catabolite Repression Optimize Growth in Stable and Variable Environments , 2014, PLoS biology.

[10]  M. Magnani,et al.  Ubiquitin C gene: Structure, function, and transcriptional regulation , 2013 .

[11]  M. Fuller,et al.  The polyubiquitin gene Ubi-p63E is essential for male meiotic cell cycle progression and germ cell differentiation in Drosophila , 2013, Development.

[12]  A. Ciechanover.  Intracellular protein degradation: from a vague idea through the lysosome and the ubiquitin-proteasome system and onto human diseases and drug targeting. , 2013, Bioorganic & medicinal chemistry.

[13]  Hui Xiang,et al.  Rapid functional divergence of a newly evolved polyubiquitin gene in Drosophila and its role in the trade-off between male fecundity and lifespan. , 2012, Molecular biology and evolution.

[14]  Scott M Wilson,et al.  Ubiquitin Homeostasis Is Critical for Synaptic Development and Function , 2011, The Journal of Neuroscience.

[15]  V. Measday,et al.  Hul5 HECT Ubiquitin Ligase Plays A Major Role in The Ubiquitylation and Turn Over of Cytosolic Misfolded Proteins , 2011, Nature Cell Biology.

[16]  Matthieu Legendre,et al.  Variable tandem repeats accelerate evolution of coding and regulatory sequences. , 2010, Annual review of genetics.

[17]  D. Finley,et al.  Recognition and processing of ubiquitin-protein conjugates by the proteasome. , 2009, Annual review of biochemistry.

[18]  Keith D Wilkinson,et al.  Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes. , 2009, Annual review of biochemistry.

[19]  Matthieu Legendre,et al.  Unstable Tandem Repeats in Promoters Confer Transcriptional Evolvability , 2009, Science.

[20]  L. Reinholdt,et al.  The Mouse Polyubiquitin Gene Ubb Is Essential for Meiotic Progression , 2007, Molecular and Cellular Biology.

[21]  Hidde L Ploegh,et al.  The mouse polyubiquitin gene UbC is essential for fetal liver development, cell‐cycle progression and stress tolerance , 2007, The EMBO journal.

[22]  N. Lecture.  Intracellular Protein Degradation: From a Vague Idea, through the Lysosome and the Ubiquitin-Proteasome System, and onto Human Diseases and Drug Targeting , 2005 .

[23]  J. Strathern,et al.  Methods in yeast genetics : a Cold Spring Harbor Laboratory course manual , 2005 .

[24]  K Bernaerts,et al.  Predictive modelling of the microbial lag phase: a review. , 2004, International journal of food microbiology.

[25]  P. Piper,et al.  Polyubiquitin gene expression contributes to oxidative stress resistance in respiratory yeast (Saccharomyces cerevisiae) , 1994, Molecular and General Genetics MGG.

[26]  A. Goldberg,et al.  Protein degradation and protection against misfolded or damaged proteins , 2003, Nature.

[27]  D. Finley,et al.  Ubiquitin Depletion as a Key Mediator of Toxicity by Translational Inhibitors , 2003, Molecular and Cellular Biology.

[28]  M. Masucci,et al.  Inhibition of ubiquitin/proteasome‐dependent proteolysis in Saccharomyces cerevisiae by a Gly‐Ala repeat , 2003, FEBS letters.

[29]  N. Saitou,et al.  Lineage-Specific Homogenization of the Polyubiquitin Gene Among Human and Great Apes , 2003, Journal of Molecular Evolution.

[30]  Anders Blomberg,et al.  Automated screening in environmental arrays allows analysis of quantitative phenotypic profiles in Saccharomyces cerevisiae , 2003, Yeast.

[31]  D. Botstein,et al.  Genomic expression programs in the response of yeast cells to environmental changes. , 2000, Molecular biology of the cell.

[32]  K. Lindsten,et al.  Short-lived green fluorescent proteins for quantifying ubiquitin/proteasome-dependent proteolysis in living cells , 2000, Nature Biotechnology.

[33]  Martin Rechsteiner,et al.  Recognition of the polyubiquitin proteolytic signal , 2000, The EMBO journal.

[34]  K. McEntee,et al.  Multiple independent regulatory pathways control UBI4 expression after heat shock in Saccharomyces cerevisiae , 1999, Molecular microbiology.

[35]  M. Hochstrasser.  Ubiquitin-dependent protein degradation. , 1996, Annual review of genetics.

[36]  R. Vierstra,et al.  Structure and evolution of genes encoding polyubiquitin and ubiquitin-like proteins in Arabidopsis thaliana ecotype Columbia. , 1995, Genetics.

[37]  J. Tobias,et al.  Cloning and functional analysis of the ubiquitin-specific protease gene UBP1 of Saccharomyces cerevisiae. , 1991, The Journal of biological chemistry.

[38]  Alexander Varshavsky,et al.  The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis , 1989, Nature.

[39]  H. Sambrook.  Molecular cloning : a laboratory manual. Cold Spring Harbor, NY , 1989 .

[40]  A. Varshavsky,et al.  The yeast ubiquitin genes: a family of natural gene fusions. , 1987, The EMBO journal.

[41]  A. Varshavsky,et al.  The yeast polyubiquitin gene is essential for resistance to high temperatures, starvation, and other stresses , 1987, Cell.

[42]  B. Raboy,et al.  Effect of heat shock on protein degradation in mammalian cells: involvement of the ubiquitin system. , 1987, The EMBO journal.

[43]  J. Vuust,et al.  The human ubiquitin multigene family: some genes contain multiple directly repeated ubiquitin coding sequences. , 1985, The EMBO journal.

[44]  Robert C. Wolpert,et al.  A Review of the , 1985 .

[45]  A. Varshavsky,et al.  The yeast ubiquitin gene: head-to-tail repeats encoding a polyubiquitin precursor protein , 1984, Nature.

[46]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .