Responses of Soil Fungi to Logging and Oil Palm Agriculture in Southeast Asian Tropical Forests

[1]  Benjamin L Turner,et al.  Mycorrhiza-mediated competition between plants and decomposers drives soil carbon storage , 2014, Nature.

[2]  John L. Orrock,et al.  Strong legacy of agricultural land use on soils and understory plant communities in longleaf pine woodlands , 2013 .

[3]  L. Tedersoo,et al.  Lineages of ectomycorrhizal fungi revisited: Foraging strategies and novel lineages revealed by sequences from belowground , 2013 .

[4]  E. Nouhra,et al.  Phylogenetic analysis of the genus Modicella reveals an independent evolutionary origin of sporocarp-forming fungi in the Mortierellales. , 2013, Fungal genetics and biology : FG & B.

[5]  B. Singh,et al.  Microbial modulators of soil carbon storage: integrating genomic and metabolic knowledge for global prediction. , 2013, Trends in microbiology.

[6]  Scott T. Bates,et al.  Changes in Bacterial and Fungal Communities across Compost Recipes, Preparation Methods, and Composting Times , 2013, PloS one.

[7]  C. Justice,et al.  High-Resolution Global Maps of 21st-Century Forest Cover Change , 2013, Science.

[8]  D. Edwards,et al.  Impact of Logging and Forest Conversion to Oil Palm Plantations on Soil Bacterial Communities in Borneo , 2013, Applied and Environmental Microbiology.

[9]  Kessy Abarenkov,et al.  Resistance and resilience of the forest soil microbiome to logging-associated compaction , 2013, The ISME Journal.

[10]  D. Edwards,et al.  Navjot's nightmare revisited: logging, agriculture, and biodiversity in Southeast Asia. , 2013, Trends in ecology & evolution.

[11]  Robert C. Edgar,et al.  UPARSE: highly accurate OTU sequences from microbial amplicon reads , 2013, Nature Methods.

[12]  G. Asner,et al.  Extreme Differences in Forest Degradation in Borneo: Comparing Practices in Sarawak, Sabah, and Brunei , 2013, PloS one.

[13]  C. Hawkes,et al.  Differences in fungal and bacterial physiology alter soil carbon and nitrogen cycling: insights from meta-analysis and theoretical models. , 2013, Ecology letters.

[14]  O. Ovaskainen,et al.  Roots and Associated Fungi Drive Long-Term Carbon Sequestration in Boreal Forest , 2013, Science.

[15]  D. Peltzer,et al.  Mycorrhizas and mycorrhizal fungal communities throughout ecosystem development , 2013, Plant and Soil.

[16]  K. McGuire,et al.  Digging the New York City Skyline: Soil Fungal Communities in Green Roofs and City Parks , 2013, PloS one.

[17]  L. Tedersoo,et al.  Novel aspects in the life cycle and biotrophic interactions in Pezizomycetes (Ascomycota, Fungi) , 2013, Molecular ecology.

[18]  Katherine N. Suding,et al.  Plant–soil feedbacks: the past, the present and future challenges , 2013 .

[19]  B. Bohannan,et al.  Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities , 2012, Proceedings of the National Academy of Sciences.

[20]  Scott T. Bates,et al.  Cross-biome metagenomic analyses of soil microbial communities and their functional attributes , 2012, Proceedings of the National Academy of Sciences.

[21]  C. Stevens,et al.  Extensive Management Promotes Plant and Microbial Nitrogen Retention in Temperate Grassland , 2012, PloS one.

[22]  Richard Christen,et al.  Significant and persistent impact of timber harvesting on soil microbial communities in Northern coniferous forests , 2012, The ISME Journal.

[23]  L. Tedersoo,et al.  Enzymatic activities and stable isotope patterns of ectomycorrhizal fungi in relation to phylogeny and exploration types in an afrotropical rain forest. , 2012, The New phytologist.

[24]  F. Brearley Ectomycorrhizal Associations of the Dipterocarpaceae , 2012 .

[25]  K. Peay,et al.  Measuring ectomycorrhizal fungal dispersal: macroecological patterns driven by microscopic propagules , 2012, Molecular ecology.

[26]  B. Griscom,et al.  Sustaining conservation values in selectively logged tropical forests: the attained and the attainable , 2012 .

[27]  F. Brearley,et al.  Tropical fungal diversity: closing the gap between species estimates and species discovery , 2012, Biodiversity and Conservation.

[28]  D. Hawksworth,et al.  Global species numbers of fungi: are tropical studies and molecular approaches contributing to a more robust estimate? , 2012, Biodiversity and Conservation.

[29]  Andy F. S. Taylor,et al.  Diversity and community composition of ectomycorrhizal fungi in a dry deciduous dipterocarp forest in Thailand , 2012, Biodiversity and Conservation.

[30]  J. Miettinen,et al.  Rethinking the 'back to wilderness' concept for Sundaland's forests , 2011 .

[31]  T. Henkel,et al.  Ectomycorrhizal fungal diversity and community structure on three co-occurring leguminous canopy tree species in a Neotropical rainforest. , 2011, The New phytologist.

[32]  T. James,et al.  Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi , 2011, Science.

[33]  H. Lambers,et al.  Strategies and agronomic interventions to improve the phosphorus-use efficiency of farming systems , 2011, Plant and Soil.

[34]  S. Allison,et al.  Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies , 2011 .

[35]  L. P. Koh,et al.  Conserving Southeast Asian forest biodiversity in human-modified landscapes , 2010 .

[36]  F. Achard,et al.  Tropical forests were the primary sources of new agricultural land in the 1980s and 1990s , 2010, Proceedings of the National Academy of Sciences.

[37]  S. Allison,et al.  Functional diversity in resource use by fungi. , 2010, Ecology.

[38]  J. Bever,et al.  Rooting theories of plant community ecology in microbial interactions. , 2010, Trends in ecology & evolution.

[39]  K. McGuire,et al.  Slowed decomposition is biotically mediated in an ectomycorrhizal, tropical rain forest , 2010, Oecologia.

[40]  J. Lennon,et al.  Spatial and temporal ecology of Scots pine ectomycorrhizas. , 2010, The New phytologist.

[41]  P. Courty,et al.  The role of ectomycorrhizal communities in forest ecosystem processes: new perspectives and emerging concepts. , 2010 .

[42]  L. Tedersoo,et al.  Low diversity and high host preference of ectomycorrhizal fungi in Western Amazonia, a neotropical biodiversity hotspot , 2010, The ISME Journal.

[43]  Andy F. S. Taylor,et al.  The UNITE database for molecular identification of fungi--recent updates and future perspectives. , 2010, The New phytologist.

[44]  T. May,et al.  Ectomycorrhizal lifestyle in fungi: global diversity, distribution, and evolution of phylogenetic lineages , 2010, Mycorrhiza.

[45]  D. Edwards,et al.  The high value of logged tropical forests: lessons from northern Borneo , 2010, Biodiversity and Conservation.

[46]  L. P. Koh,et al.  Addressing the threats to biodiversity from oil-palm agriculture , 2010, Biodiversity and Conservation.

[47]  M. Uriarte,et al.  Synthesis: Land Transitions in the Tropics , 2010 .

[48]  R. DeFries,et al.  A Contemporary Assessment of Change in Humid Tropical Forests , 2009, Conservation biology : the journal of the Society for Conservation Biology.

[49]  J. Six,et al.  Searching for unifying principles in soil ecology , 2009 .

[50]  R. Knight,et al.  Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale , 2009, Applied and Environmental Microbiology.

[51]  J. Barlow,et al.  Prospects for tropical forest biodiversity in a human-modified world. , 2009, Ecology letters.

[52]  J. Okhuoya,et al.  Diversity of macrofungi in oil palm agroforests of Edo State, Nigeria. , 2009 .

[53]  P. Brookes,et al.  Contrasting Soil pH Effects on Fungal and Bacterial Growth Suggest Functional Redundancy in Carbon Mineralization , 2009, Applied and Environmental Microbiology.

[54]  L. P. Koh,et al.  A Meta‐Analysis of the Impact of Anthropogenic Forest Disturbance on Southeast Asia's Biotas , 2009 .

[55]  Alexandra C Morel,et al.  How will oil palm expansion affect biodiversity? , 2008, Trends in ecology & evolution.

[56]  S. Allison,et al.  Fungal Taxa Target Different Carbon Sources in Forest Soil , 2008, Ecosystems.

[57]  S. Allison,et al.  Resistance, resilience, and redundancy in microbial communities , 2008, Proceedings of the National Academy of Sciences.

[58]  Ivette Perfecto,et al.  Biodiversity Conservation in Tropical Agroecosystems , 2008, Annals of the New York Academy of Sciences.

[59]  E. Delong,et al.  The Microbial Engines That Drive Earth's Biogeochemical Cycles , 2008, Science.

[60]  L. P. Koh,et al.  Is oil palm agriculture really destroying tropical biodiversity? , 2008 .

[61]  S. K. Schmidt,et al.  Phylogeny and Ecophysiology of Opportunistic “Snow Molds” from a Subalpine Forest Ecosystem , 2008, Microbial Ecology.

[62]  S. Simard,et al.  Ectomycorrhizal fungal succession in mixed temperate forests. , 2007, The New phytologist.

[63]  J. Tiedje,et al.  Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy , 2007, Applied and Environmental Microbiology.

[64]  T. Osono Ecology of ligninolytic fungi associated with leaf litter decomposition , 2007, Ecological Research.

[65]  Y. Basiron Palm oil production through sustainable plantations , 2007 .

[66]  K. McLauchlan,et al.  The Nature and Longevity of Agricultural Impacts on Soil Carbon and Nutrients: A Review , 2006, Ecosystems.

[67]  R. Freckleton,et al.  Plant pathogens drive density-dependent seedling mortality in a tropical tree. , 2006, Ecology letters.

[68]  M. Turner,et al.  Microbial community variation and its relationship with nitrogen mineralization in historically altered forests. , 2006, Ecology.

[69]  J. Six,et al.  Bacterial and Fungal Contributions to Carbon Sequestration in Agroecosystems , 2006 .

[70]  Lynne Boddy,et al.  Living in a fungal world: impact of fungi on soil bacterial niche development. , 2005, FEMS microbiology reviews.

[71]  Mark Vellend,et al.  Recovery of forest plant communities in post‐agricultural landscapes , 2005 .

[72]  Robin Sen,et al.  UNITE: a database providing web-based methods for the molecular identification of ectomycorrhizal fungi. , 2005, The New phytologist.

[73]  P. Reich,et al.  Ectomycorrhizal fungal communities at forest edges , 2005 .

[74]  P. Grogan,et al.  Detection of forest stand-level spatial structure in ectomycorrhizal fungal communities. , 2004, FEMS microbiology ecology.

[75]  H. Setälä,et al.  Decomposition rate of organic substrates in relation to the species diversity of soil saprophytic fungi , 2004, Oecologia.

[76]  Rodolfo Dirzo,et al.  Global State of Biodiversity and Loss , 2003 .

[77]  K. Treseder,et al.  Ecology of mycorrhizae: a conceptual framework for complex interactions among plants and fungi. , 2003, Annual review of phytopathology.

[78]  K. Nara,et al.  Underground primary succession of ectomycorrhizal fungi in a volcanic desert on Mount Fuji. , 2003, The New phytologist.

[79]  N. Manokaran,et al.  Effect of selective logging on canopy and stand structure and tree species composition in a lowland dipterocarp forest in peninsular Malaysia , 2003 .

[80]  E. Dambrine,et al.  Irreversible impact of past land use on forest soils and biodiversity , 2002 .

[81]  S. Lavorel,et al.  Predicting changes in community composition and ecosystem functioning from plant traits: revisiting the Holy Grail , 2002 .

[82]  T. Brooks,et al.  Habitat Loss and Extinction in the Hotspots of Biodiversity , 2002 .

[83]  Brian G. Wolff,et al.  Forecasting Agriculturally Driven Global Environmental Change , 2001, Science.

[84]  T. Szaro,et al.  Small genets of Lactarius xanthogalactus, Russula cremoricolor and Amanita francheti in late‐stage ectomycorrhizal successions , 2001, Molecular ecology.

[85]  R. Burns International Conference. Enzymes in the Environment: Activity, Ecology and Applications , 2000 .

[86]  J. Compton,et al.  LONG‐TERM IMPACTS OF AGRICULTURE ON SOIL CARBON AND NITROGEN IN NEW ENGLAND FORESTS , 2000 .

[87]  T. Bruns,et al.  Community structure of ectomycorrhizal fungi in a Pinus muricata forest: minimal overlap between the mature forest and resistant propagule communities , 1999, Molecular ecology.

[88]  J. Kranabetter,et al.  Ectomycorrhizal community structure across forest openings on naturally regenerated western hemlock seedlings , 1998 .

[89]  R. Treu Macrofungi in oil palm plantations of South East Asia , 1998 .

[90]  I. Alexander,et al.  The dynamics of ectomycorrhizal infection of Shorea leprosula seedlings in Malaysian rain forests , 1996 .

[91]  D. Moorhead,et al.  Resource allocation to extracellular enzyme production: A model for nitrogen and phosphorus control of litter decomposition , 1994 .

[92]  I. Alexander,et al.  The role of mycorrhizas in the regeneration of some Malaysian forest trees , 1992 .

[93]  P. A. Mason,et al.  Succession of fruitbodies of sheathing mycorrhizal fungi associated with Betula pendula , 1984 .

[94]  K. McGuire,et al.  Evaluating the impact of oil palm agriculture and logging on soil microbial communities in South-east Asia. , 2015 .

[95]  A. Thomas,et al.  Land-use change impacts on soil processes : , 2015 .

[96]  P. Strong,et al.  Rapid soil fungal community response to intensive management in a bamboo forest developed from rice paddies , 2014 .

[97]  J. Orrock,et al.  Historic land use influences contemporary establishment of invasive plant species , 2012, Oecologia.

[98]  A. Diedhiou,et al.  Ectomycorrhizal symbiosis of tropical African trees , 2011, Mycorrhiza.

[99]  S. Davies,et al.  Potential Link between Plant and Fungal Distributions in a Dipterocarp Rainforest: Community and Phylogenetic Structure of Tropical Ectomycorrhizal Fungi across a Plant and Soil Ecotone , 2009 .

[100]  I. Baillie,et al.  HETEROGENEITY OF SOIL MORPHOLOGY AND HYDROLOGY ON THE 50 HA LONG-TERM ECOLOGICAL RESEARCH PLOT AT PASOH, PENINSULAR MALAYSIA , 2010 .

[101]  R. Summerbell Root endophyte and mycorrhizosphere fungi of black spruce, Picea mariana, in a boreal forest habitat: influence of site factors on fungal distributions , 2005 .

[102]  C. Margules,et al.  Predictors of Species Sensitivity to Fragmentation , 2004, Biodiversity & Conservation.

[103]  E. Leigh,et al.  Tropical forest diversity and dynamism : findings from a large-scale plot network , 2004 .

[104]  P. Bridge,et al.  Soil fungi: diversity and detection , 2004, Plant and Soil.

[105]  R. L. Sinsabaugha,et al.  The effects of long term nitrogen deposition on extracellular enzyme activity in an Acer saccharum forest soil , 2002 .

[106]  J. Frankland Fungal succession – unravelling the unpredictable , 1998 .