Molecular and functional analysis of the ribosomal L11 and S12 protein genes (rplK and rpsL) of Streptomyces coelicolor A3(2)

Abstract A RelC deletion mutant, KO-100, of Streptomyces coelicolor A3(2) has been isolated from a collection of spontaneous thiostrepton-resistant mutants. KO-100 grows as vigorously as the parent strain and possesses a 6-bp deletion within the rplK, previously termed relC. When the wild-type rplK gene was propagated on a low-copy-number vector in mutant KO-100, the ability to produce ppGpp, actinorhodin and undecylprodigiosin, which had been lost in the RelC mutant, was completely restored. Allele replacement by gene homogenotization demonstrated that the RelC mutation is responsible for the resistance to thiostrepton and the inactivation of ppGpp, actinorhodin and undecylprodigiosin production. Western blotting showed that ribosomes from the RelC mutant KO-100 contain only one-eighth the amount of L11 protein found in ribosomes of the parent strain. The impairment of antibiotic production in KO-100 could be rescued by the introduction of mutations that confer resistance to streptomycin (str), which result in alteration of Lys-88 in ribosomal protein S12 to Glu or Arg. No accompanying restoration of ppGpp synthesis was detected in these RelC str double mutants.

[1]  K. Ochi Metabolic initiation of differentiation and secondary metabolism by Streptomyces griseus: significance of the stringent response (ppGpp) and GTP content in relation to A factor , 1987, Journal of bacteriology.

[2]  V. Ševčík [Sporulation in Streptomyces griseus in deep culture]. , 1953, Chekhoslovatskaia biologiia.

[3]  Walter E. Hill,et al.  The Ribosome : structure, function, and evolution , 1990 .

[4]  K. Ochi Changes in Nucleotide Pools during Sporulation of Streptomyces griseus in Submerged Culture , 1987 .

[5]  K. Ochi,et al.  Expression analysis of the ssgA gene product, associated with sporulation and cell division in Streptomyces griseus. , 1997, Microbiology.

[6]  T. Kieser,et al.  Factors affecting the isolation of CCC DNA from Streptomyces lividans and Escherichia coli. , 1984, Plasmid.

[7]  K. Ochi A relaxed (rel) mutant of Streptomyces coelicolor A3(2) with a missing ribosomal protein lacks the ability to accumulate ppGpp, A-factor and prodigiosin. , 1990, Journal of general microbiology.

[8]  K. Ochi,et al.  Induction of actinorhodin production by rpsL (encoding ribosomal protein S12) mutations that confer streptomycin resistance in Streptomyces lividans and Streptomyces coelicolor A3(2) , 1996, Journal of bacteriology.

[9]  K. Ochi,et al.  Changes in patterns of ADP-ribosylated proteins during differentiation of Streptomyces coelicolor A3(2) and its development mutants , 1996, Journal of bacteriology.

[10]  M. Bibb,et al.  Cloning, characterization and disruption of a (p)ppGpp synthetase gene (relA) of Streptomyces coelicolor A3(2) , 1996, Molecular microbiology.

[11]  K. Ochi Heterogeneity of ribosomal proteins among Streptomyces species and its application to identification. , 1989, Journal of general microbiology.

[12]  K. Ochi,et al.  Pleiotropic effects of a relC mutation in Streptomyces antibioticus , 1991, Journal of bacteriology.

[13]  M. Bibb,et al.  Guanosine pentaphosphate synthetase from Streptomyces antibioticus is also a polynucleotide phosphorylase , 1996, Journal of bacteriology.

[14]  H. Wittmann,et al.  Ribosomal proteins. 33. Location of amino-acid replacements in protein S12 isolated from Escherichia coli mutants resistant to streptomycin. , 1972, Journal of molecular biology.

[15]  D. Lydiate,et al.  The Streptomyces plasmid SCP2*: its functional analysis and development into useful cloning vectors. , 1985, Gene.

[16]  M. Stark,et al.  On the biological role of ribosomal protein BM-L11 of Bacillus megaterium, homologous with Escherichia coli ribosomal protein L11. , 1979, Journal of molecular biology.

[17]  M. Stark,et al.  Ribosomes in thiostrepton-resistant mutants of Bacillus megaterium lacking a single 50 S subunit protein. , 1979, Journal of molecular biology.

[18]  E. Dabbs,et al.  Mutants lacking individual ribosomal proteins as a tool to investigate ribosomal properties. , 1991, Biochimie.

[19]  S. Cole,et al.  Streptomycin resistance in mycobacteria , 1994, Antimicrobial Agents and Chemotherapy.

[20]  J. Garrels,et al.  Global changes in gene expression related to antibiotic synthesis in Streptomyces hygroscopicus , 1992, Molecular microbiology.

[21]  B. D. Davis,et al.  Streptomycin and Related Antibiotics , 1979 .

[22]  G. Jones,et al.  Purification and properties of ATP:GTP 3'-pyrophosphotransferase (guanosine pentaphosphate synthetase) from Streptomyces antibioticus , 1994, Journal of bacteriology.

[23]  F. Hahn Mechanism of Action of Antibacterial Agents , 1979, Antibiotics.

[24]  K. Ochi Occurrence of the stringent response in Streptomyces sp. and its significance for the initiation of morphological and physiological differentiation. , 1986, Journal of general microbiology.

[25]  K. Ochi A rel Mutation Abolishes the Enzyme Induction Needed for Actinomycin Synthesis by Streptomyces antibioticus , 1987 .

[26]  K. Chater,et al.  Denaturation of circular or linear DNA facilitates targeted integrative transformation of Streptomyces coelicolor A3(2): possible relevance to other organisms , 1997, Journal of bacteriology.

[27]  H. Baylis,et al.  The stringent response in Streptomyces coelicolor A3(2) , 1991, Molecular microbiology.

[28]  P. Dennis,et al.  Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli. , 1979, Proceedings of the National Academy of Sciences of the United States of America.

[29]  K. Ochi,et al.  A novel method for improving Streptomyces coelicolor A3(2) for production of actinorhodin by introduction of rpsL (encoding ribosomal protein S12) mutations conferring resistance to streptomycin. , 1997, The Journal of antibiotics.

[30]  H. Yoshikawa,et al.  Isolation and characterization of the secE homologue gene of Bacillus subtilis , 1993, Molecular microbiology.

[31]  J. Sambrook,et al.  Molecular Cloning: A Laboratory Manual , 2001 .

[32]  E. Dabbs,et al.  Mutants of Escherichia coli lacking ribosomal protein L11. , 1980, The Journal of biological chemistry.

[33]  E. Böttger,et al.  Molecular basis of streptomycin resistance in Mycobacterium tuberculosis: alterations of the ribosomal protein S12 gene and point mutations within a functional 16S ribosomal RNA pseudoknot , 1993, Molecular microbiology.

[34]  R. Mellado,et al.  A relA/spoT Homologous Gene from Streptomyces coelicolor A3(2) Controls Antibiotic Biosynthetic Genes (*) , 1996, The Journal of Biological Chemistry.

[35]  E. Takano,et al.  Transcriptional regulation of the redD transcriptional activator gene accounts for growth‐phase‐dependent production of the antibiotic undecylprodigiosin in Streptomyces coelicolor A3(2) , 1992, Molecular microbiology.

[36]  M. Bibb,et al.  The Stringent Response, ppGpp and Antibiotic Production in Streptomyces coelicolor A3(2) , 1994 .

[37]  K. Ochi,et al.  Molecular cloning and characterization of the obg gene of Streptomyces griseus in relation to the onset of morphological differentiation , 1997, Journal of bacteriology.

[38]  K. Chater,et al.  Genetics of differentiation in Streptomyces. , 1993, Annual review of microbiology.

[39]  K. Ochi,et al.  Molecular analysis of the ribosomal L11 protein gene (rplK = relC ) of Streptomyces griseus and identification of a deletion allele , 1997, Molecular and General Genetics MGG.

[40]  C. Thompson,et al.  Gene cloning in Streptomyces. , 1982, Current topics in microbiology and immunology.

[41]  G. Jones,et al.  Activation of ATP:GTP 3'-pyrophosphotransferase (guanosine pentaphosphate synthetase) in Streptomyces antibioticus , 1994, Journal of bacteriology.

[42]  E. Böttger,et al.  Genetic alterations in streptomycin-resistant Mycobacterium tuberculosis: mapping of mutations conferring resistance , 1994, Antimicrobial Agents and Chemotherapy.

[43]  D. Hopwood Genetic manipulation of Streptomyces : a laboratory manual , 1985 .

[44]  H. Kinashi,et al.  A set of ordered cosmids and a detailed genetic and physical map for the 8 Mb Streptomyces coelicolor A3(2) chromosome , 1996, Molecular microbiology.

[45]  K. Ochi Streptomyces relC mutants with an altered ribosomal protein ST-L11 and genetic analysis of a Streptomyces griseus relC mutant , 1990, Journal of bacteriology.

[46]  R. Freudl,et al.  The Staphylococcus carnosus secE gene: cloning, nucleotide sequence, and functional characterization in Escherichia coli secE mutant strains. , 1994, FEMS microbiology letters.

[47]  W. Piepersberg Streptomycin and related aminoglycosides. , 1995, Biotechnology.

[48]  K. Ochi,et al.  Effect of Antibiotics on Sporulation Caused by the Stringent Response in Bacillus subtilis , 1983 .

[49]  K. Ochi A decrease in GTP content is associated with aerial mycelium formation in Streptomyces MA406-A-1. , 1986, Journal of general microbiology.

[50]  S. Kuberski,et al.  The nusG gene of Streptomyces griseus: cloning of the gene and analysis of the A-factor binding properties of the gene product. , 1994, FEMS microbiology letters.