Different nucleosomal architectures at early and late replicating origins in Saccharomyces cerevisiae

[1]  Ryuichiro Nakato,et al.  The dynamics of genome replication using deep sequencing , 2013, Nucleic acids research.

[2]  D. Reinberg,et al.  Nucleosome-binding activities within JARID2 and EZH1 regulate the function of PRC2 on chromatin , 2013, Genes & development.

[3]  F. Antequera,et al.  Clustered regulatory elements at nucleosome-depleted regions punctuate a constant nucleosomal landscape in Schizosaccharomyces pombe , 2013, BMC Genomics.

[4]  A. Kristjuhan,et al.  Chromatin-dependent and -independent regulation of DNA replication origin activation in budding yeast , 2012, EMBO reports.

[5]  M. Raghuraman,et al.  Functional Centromeres Determine the Activation Time of Pericentric Origins of DNA Replication in Saccharomyces cerevisiae , 2012, PLoS genetics.

[6]  T. Itoh,et al.  Replisome stability at defective DNA replication forks is independent of S phase checkpoint kinases. , 2012, Molecular cell.

[7]  Jared M. Peace,et al.  Forkhead Transcription Factors Establish Origin Timing and Long-Range Clustering in S. cerevisiae , 2012, Cell.

[8]  Ryuichiro Nakato,et al.  Origin Association of Sld3, Sld7, and Cdc45 Proteins Is a Key Step for Determination of Origin-Firing Timing , 2011, Current Biology.

[9]  A. Donaldson,et al.  Limiting replication initiation factors execute the temporal programme of origin firing in budding yeast , 2011, The EMBO journal.

[10]  Grant W. Brown,et al.  Diversity of Eukaryotic DNA Replication Origins Revealed by Genome-Wide Analysis of Chromatin Structure , 2010, PLoS genetics.

[11]  K. Labib How do Cdc7 and cyclin-dependent kinases trigger the initiation of chromosome replication in eukaryotic cells? , 2010, Genes & development.

[12]  S. Bell,et al.  Conserved nucleosome positioning defines replication origins. , 2010, Genes & development.

[13]  J. Diffley,et al.  Eukaryotic DNA replication control: lock and load, then fire. , 2009, Current opinion in cell biology.

[14]  Cizhong Jiang,et al.  A compiled and systematic reference map of nucleosome positions across the Saccharomyces cerevisiae genome , 2009, Genome Biology.

[15]  Cizhong Jiang,et al.  Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome. , 2009, Molecular cell.

[16]  K. Ekwall,et al.  Genome-wide mapping of nucleosome positions in Schizosaccharomyces pombe. , 2009, Methods.

[17]  Simon Tavaré,et al.  Genome-wide replication profiles indicate an expansive role for Rpd3L in regulating replication initiation timing or efficiency, and reveal genomic loci of Rpd3 function in Saccharomyces cerevisiae. , 2009, Genes & development.

[18]  J. Haber,et al.  Replicon Dynamics, Dormant Origin Firing, and Terminal Fork Integrity after Double-Strand Break Formation , 2009, Cell.

[19]  K. Shirahige,et al.  ChIP-on-chip analysis of DNA topoisomerases. , 2009, Methods in molecular biology.

[20]  E. Schwob,et al.  Excess MCM proteins protect human cells from replicative stress by licensing backup origins of replication , 2008, Proceedings of the National Academy of Sciences.

[21]  Steven J. M. Jones,et al.  Dynamic Remodeling of Individual Nucleosomes Across a Eukaryotic Genome in Response to Transcriptional Perturbation , 2007, PLoS biology.

[22]  Ronald W. Davis,et al.  A high-resolution atlas of nucleosome occupancy in yeast , 2007, Nature Genetics.

[23]  W. Gu,et al.  Non-transcriptional control of DNA replication by c-Myc , 2007, Nature.

[24]  David Collingwood,et al.  Replication in Hydroxyurea: It's a Matter of Time , 2007, Molecular and Cellular Biology.

[25]  B. Tye,et al.  A viable allele of Mcm4 causes chromosome instability and mammary adenocarcinomas in mice , 2007, Nature Genetics.

[26]  H. Minami,et al.  Binding of AlF-C, an Orc1-Binding Transcriptional Regulator, Enhances Replicator Activity of the Rat Aldolase B Origin , 2006, Molecular and Cellular Biology.

[27]  Conrad A. Nieduszynski,et al.  Genome-wide identification of replication origins in yeast by comparative genomics. , 2006, Genes & development.

[28]  David Collingwood,et al.  Genomic mapping of single-stranded DNA in hydroxyurea-challenged yeasts identifies origins of replication , 2006, Nature Cell Biology.

[29]  Ting Wang,et al.  An improved map of conserved regulatory sites for Saccharomyces cerevisiae , 2006, BMC Bioinformatics.

[30]  H. Kohzaki,et al.  Transcription factors and DNA replication origin selection , 2005, BioEssays : news and reviews in molecular, cellular and developmental biology.

[31]  M. Vingron,et al.  Control of replication initiation and heterochromatin formation in Saccharomyces cerevisiae by a regulator of meiotic gene expression. , 2005, Genes & development.

[32]  Nicola J. Rinaldi,et al.  Transcriptional regulatory code of a eukaryotic genome , 2004, Nature.

[33]  D. G. Gibson,et al.  The Rpd3-Sin3 Histone Deacetylase Regulates Replication Timing and Enables Intra-S Origin Control in Saccharomyces cerevisiae , 2004, Molecular and Cellular Biology.

[34]  Michael Grunstein,et al.  Histone acetylation regulates the time of replication origin firing. , 2002, Molecular cell.

[35]  K. Kitada,et al.  Mapping of early firing origins on a replication profile of budding yeast , 2002, Genes to cells : devoted to molecular & cellular mechanisms.

[36]  Ioannis Xenarios,et al.  Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases , 2002, Cell.

[37]  Anindya Dutta,et al.  DNA replication in eukaryotic cells. , 2002, Annual review of biochemistry.

[38]  John J. Wyrick,et al.  Genome-Wide Distribution of ORC and MCM Proteins in S. cerevisiae: High-Resolution Mapping of Replication Origins , 2001, Science.

[39]  Ronald W. Davis,et al.  Replication dynamics of the yeast genome. , 2001, Science.

[40]  H. Araki,et al.  Sld3, which interacts with Cdc45 (Sld4), functions for chromosomal DNA replication in Saccharomyces cerevisiae , 2001, The EMBO journal.

[41]  S. Bell,et al.  Nucleosomes positioned by ORC facilitate the initiation of DNA replication. , 2001, Molecular cell.

[42]  Michael Grunstein,et al.  Global histone acetylation and deacetylation in yeast , 2000, Nature.

[43]  R. Morse,et al.  RAP, RAP, open up! New wrinkles for RAP1 in yeast. , 2000, Trends in genetics : TIG.

[44]  J. Diffley,et al.  Activation of dormant origins of DNA replication in budding yeast. , 1999, Genes & development.

[45]  Marija Vujcic,et al.  Activation of Silent Replication Origins at Autonomously Replicating Sequence Elements near the HML Locus in Budding Yeast , 1999, Molecular and Cellular Biology.

[46]  O. Aparicio,et al.  Differential assembly of Cdc45p and DNA polymerases at early and late origins of DNA replication. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[47]  D. Gottschling,et al.  Telomeric chromatin modulates replication timing near chromosome ends. , 1999, Genes & development.

[48]  K. Shirahige,et al.  Regulation of DNA-replication origins during cell-cycle progression , 1998, Nature.

[49]  J. Diffley,et al.  A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication , 1998, Nature.

[50]  W. L. Fangman,et al.  Replication profile of Saccharomyces cerevisiae chromosome VI , 1997, Genes to cells : devoted to molecular & cellular mechanisms.

[51]  W. L. Fangman,et al.  Cell cycle-dependent establishment of a late replication program. , 1997, Science.

[52]  B. J. Brewer,et al.  Analysis of replication intermediates by two-dimensional agarose gel electrophoresis. , 1995, Methods in enzymology.

[53]  D. Lockshon,et al.  The arrest of replication forks in the rDNA of yeast occurs independently of transcription , 1992, Cell.

[54]  Bruce Stillman,et al.  ATP-dependent recognition of eukaryotic origins of DNA replication by a multiprotein complex , 1992, Nature.

[55]  W. L. Fangman,et al.  A position effect on the time of replication origin activation in yeast , 1992, Cell.

[56]  J. Diffley,et al.  Similarity between the transcriptional silencer binding proteins ABF1 and RAP1. , 1989, Science.