Expansion and evolutionary patterns of GDSL-type esterases/lipases in Rosaceae genomes
暂无分享,去创建一个
Yongping Cai | Q. Jin | Yunpeng Cao | Yi Lin | Muhammad Abdullah | Dahui Li | Yahui Han | Dandan Meng | Jiangliu Yu
[1] Margaret H. Frank,et al. TBtools - an integrative toolkit developed for interactive analyses of big biological data. , 2020, Molecular plant.
[2] Yi-He Yu,et al. Transcriptional Analysis of the Early Ripening of ‘Kyoho’ Grape in Response to the Treatment of Riboflavin , 2019, Genes.
[3] Yongping Cai,et al. Comparative analysis of B-BOX genes and their expression pattern analysis under various treatments in Dendrobium officinale , 2019, BMC Plant Biology.
[4] Xianqi Hu,et al. Identification and expression analysis of the GDSL esterase/lipase family genes, and the characterization of SaGLIP8 in Sedum alfredii Hance under cadmium stress , 2019, PeerJ.
[5] W. Zeng,et al. Metacaspase gene family in Rosaceae genomes: Comparative genomic analysis and their expression during pear pollen tube and fruit development , 2019, PloS one.
[6] Yongping Cai,et al. Systematic analysis and comparison of the PHD-Finger gene family in Chinese pear (Pyrus bretschneideri) and its role in fruit development , 2018, Functional & Integrative Genomics.
[7] Chengjie Chen,et al. TBtools, a Toolkit for Biologists integrating various HTS-data handling tools with a user-friendly interface , 2018, bioRxiv.
[8] Leiting Li,et al. Different Modes of Gene Duplication Show Divergent Evolutionary Patterns and Contribute Differently to the Expansion of Gene Families Involved in Important Fruit Traits in Pear (Pyrus bretschneideri) , 2018, Front. Plant Sci..
[9] Yongping Cai,et al. B-BOX genes: genome-wide identification, evolution and their contribution to pollen growth in pear (Pyrus bretschneideri Rehd.) , 2017, BMC Plant Biology.
[10] Long-fang O. Chen,et al. Genome-wide analysis of GDSL-type esterases/lipases in Arabidopsis , 2017, Plant Molecular Biology.
[11] J. Gouzy,et al. High-quality de novo assembly of the apple genome and methylome dynamics of early fruit development , 2017, Nature Genetics.
[12] S. Isobe,et al. The genome sequence of sweet cherry (Prunus avium) for use in genomics-assisted breeding , 2017, DNA research : an international journal for rapid publication of reports on genes and genomes.
[13] Baohong Zhang,et al. MicroRNAs in model and complex organisms , 2017, Functional & Integrative Genomics.
[14] Y. Hur,et al. Biologia Plantarum Xx (x): Xxx-xxx, 20xx Brexl6, a Gdsl Lipase Gene of Brassica Rapa, Functions in Pollen Development , 2022 .
[15] J. Jacobs,et al. Gene expression profiles predictive of cold-induced sweetening in potato , 2017, Functional & Integrative Genomics.
[16] Baohong Zhang,et al. MicroRNAs in model and complex organisms , 2017, Functional & Integrative Genomics.
[17] Yongping Cai,et al. Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa) , 2016, Front. Plant Sci..
[18] Jeffrey T Leek,et al. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown , 2016, Nature Protocols.
[19] Yongping Cai,et al. MYB Transcription Factors in Chinese Pear (Pyrus bretschneideri Rehd.): Genome-Wide Identification, Classification, and Expression Profiling during Fruit Development , 2016, Front. Plant Sci..
[20] Peer Bork,et al. Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees , 2016, Nucleic Acids Res..
[21] J. Kumar,et al. Exploring drought stress-regulated genes in senna (Cassia angustifolia Vahl.): a transcriptomic approach , 2016, Functional & Integrative Genomics.
[22] Hankuil Yi,et al. GDSL esterase/lipase genes in Brassica rapa L.: genome-wide identification and expression analysis , 2016, Molecular Genetics and Genomics.
[23] L. Schreiber,et al. ABORTED MICROSPORES Acts as a Master Regulator of Pollen Wall Formation in Arabidopsis[C][W][OPEN] , 2014, Plant Cell.
[24] Ping Zheng,et al. The Genome Database for Rosaceae (GDR): year 10 update , 2013, Nucleic Acids Res..
[25] Zhen Li,et al. Molecular evolution of the HD-ZIP I gene family in legume genomes. , 2014, Gene.
[26] M. Rouard,et al. Genomic analysis of NAC transcription factors in banana (Musa acuminata) and definition of NAC orthologous groups for monocots and dicots , 2014, Plant Molecular Biology.
[27] Christina E. Wells,et al. The high-quality draft genome of peach (Prunus persica) identifies unique patterns of genetic diversity, domestication and genome evolution , 2013, Nature Genetics.
[28] S. Eddy,et al. Challenges in homology search: HMMER3 and convergent evolution of coiled-coil regions , 2013, Nucleic acids research.
[29] Jun Wang,et al. The genome of the pear (Pyrus bretschneideri Rehd.) , 2013, Genome research.
[30] Xun Xu,et al. The genome of Prunus mume , 2012, Nature Communications.
[31] Jeremy D. DeBarry,et al. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity , 2012, Nucleic acids research.
[32] Peer Bork,et al. SMART 7: recent updates to the protein domain annotation resource , 2011, Nucleic Acids Res..
[33] S. Mane,et al. Contrasting patterns of evolution following whole genome versus tandem duplication events in Populus. , 2012, Genome research.
[34] Jei-Fu Shaw,et al. Multifunctionality and diversity of GDSL esterase/lipase gene family in rice (Oryza sativa L. japonica) genome: new insights from bioinformatics analysis , 2012, BMC Genomics.
[35] Stephen P. Ficklin,et al. Modes of Gene Duplication Contribute Differently to Genetic Novelty and Redundancy, but Show Parallels across Divergent Angiosperms , 2011, PloS one.
[36] Henry D. Priest,et al. The genome of woodland strawberry (Fragaria vesca) , 2011, Nature Genetics.
[37] M. Zik,et al. Combining comparative sequence and genomic data to ascertain phylogenetic relationships and explore the evolution of the large GDSL-lipase family in land plants. , 2011, Molecular biology and evolution.
[38] Roger E Bumgarner,et al. The genome of the domesticated apple (Malus × domestica Borkh.) , 2010, Nature Genetics.
[39] Steven J. M. Jones,et al. Circos: an information aesthetic for comparative genomics. , 2009, Genome research.
[40] D. Preuss,et al. The extracellular lipase EXL4 is required for efficient hydration of Arabidopsis pollen , 2009, Sexual Plant Reproduction.
[41] Pablo Librado,et al. DnaSP v5: a software for comprehensive analysis of DNA polymorphism data , 2009, Bioinform..
[42] Adam P. Arkin,et al. FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix , 2009, Molecular biology and evolution.
[43] Steven Maere,et al. Plants with double genomes might have had a better chance to survive the Cretaceous–Tertiary extinction event , 2009, Proceedings of the National Academy of Sciences.
[44] O. K. Park,et al. Arabidopsis GDSL lipase 2 plays a role in pathogen defense via negative regulation of auxin signaling. , 2009, Biochemical and biophysical research communications.
[45] W. C. Yim,et al. Expression diversity and evolutionary dynamics of rice duplicate genes , 2009, Molecular Genetics and Genomics.
[46] E. Birney,et al. Pfam: the protein families database , 2013, Nucleic Acids Res..
[47] T. Yoshizumi,et al. RETARDED GROWTH OF EMBRYO1, a New Basic Helix-Loop-Helix Protein, Expresses in Endosperm to Control Embryo Growth1[W] , 2008, Plant Physiology.
[48] C. Carter,et al. Identification, cloning and characterization of a GDSL lipase secreted into the nectar of Jacaranda mimosifolia , 2008, Plant Molecular Biology.
[49] Andrew H. Paterson,et al. Synteny and Collinearity in Plant Genomes , 2008, Science.
[50] B. Gill,et al. Micro-colinearity between rice, Brachypodium, and Triticum monococcum at the wheat domestication locus Q , 2008, Functional & Integrative Genomics.
[51] T. Yoshizumi,et al. RETARDED GROWTH OF EMBRYO 1 , a New Basic Helix-Loop-Helix Protein , Expresses in Endosperm to Control Embryo Growth 1 [ W ] , 2008 .
[52] C. Gutjahr,et al. GER1, a GDSL motif-encoding gene from rice is a novel early light- and jasmonate-induced gene. , 2007, Plant biology.
[53] J. Forment,et al. Overexpression of Arabidopsis thaliana LTL1, a salt-induced gene encoding a GDSL-motif lipase, increases salt tolerance in yeast and transgenic plants. , 2006, Plant, cell & environment.
[54] Hongyan Yao,et al. Isolation and expression analysis of a GDSL-like lipase gene from Brassica napus L. , 2006, Journal of biochemistry and molecular biology.
[55] Il Seok Oh,et al. Secretome Analysis Reveals an Arabidopsis Lipase Involved in Defense against Alternaria brassicicolaw⃞ , 2005, The Plant Cell Online.
[56] Tai-Huang Huang,et al. GDSL family of serine esterases/lipases. , 2004, Progress in lipid research.
[57] Guillaume Blanc,et al. Widespread Paleopolyploidy in Model Plant Species Inferred from Age Distributions of Duplicate Genes , 2004, The Plant Cell Online.
[58] Robert C. Edgar,et al. MUSCLE: multiple sequence alignment with high accuracy and high throughput. , 2004, Nucleic acids research.
[59] Eugene V Koonin,et al. Prevalence of intron gain over intron loss in the evolution of paralogous gene families. , 2004, Nucleic acids research.
[60] Steven B Cannon,et al. The roles of segmental and tandem gene duplication in the evolution of large gene families in Arabidopsis thaliana , 2004, BMC Plant Biology.
[61] Alexei Fedorov,et al. Large-scale comparison of intron positions among animal, plant, and fungal genes , 2002, Proceedings of the National Academy of Sciences of the United States of America.
[62] Rolf Apweiler,et al. InterProScan - an integration platform for the signature-recognition methods in InterPro , 2001, Bioinform..
[63] A. Force,et al. The probability of duplicate gene preservation by subfunctionalization. , 2000, Genetics.
[64] A. Force,et al. Preservation of duplicate genes by complementary, degenerative mutations. , 1999, Genetics.
[65] R D Appel,et al. Protein identification and analysis tools in the ExPASy server. , 1999, Methods in molecular biology.
[66] C Upton,et al. A new family of lipolytic enzymes? , 1995, Trends in biochemical sciences.
[67] William R. Taylor,et al. The rapid generation of mutation data matrices from protein sequences , 1992, Comput. Appl. Biosci..