Quantitation of phosphopeptides using affinity chromatography and stable isotope labeling

[1]  J. Shabanowitz,et al.  Phosphoproteome Analysis of Capacitated Human Sperm , 2003, The Journal of Biological Chemistry.

[2]  B. Chait,et al.  Enrichment analysis of phosphorylated proteins as a tool for probing the phosphoproteome , 2001, Nature Biotechnology.

[3]  A. Pandey,et al.  Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. , 2001, Analytical chemistry.

[4]  S. Carr,et al.  Selective detection and sequencing of phosphopeptides at the femtomole level by mass spectrometry. , 1996, Analytical biochemistry.

[5]  F. Cross,et al.  Accurate quantitation of protein expression and site-specific phosphorylation. , 1999, Proceedings of the National Academy of Sciences of the United States of America.

[6]  J. Porath,et al.  Isolation of phosphoproteins by immobilized metal (Fe3+) affinity chromatography. , 1986, Analytical biochemistry.

[7]  A. Stensballe,et al.  Characterization of phosphoproteins from electrophoretic gels by nanoscale Fe(III) affinity chromatography with off‐line mass spectrometry analysis , 2001, Proteomics.

[8]  Vineet Bafna,et al.  SCOPE: a probabilistic model for scoring tandem mass spectra against a peptide database , 2001, ISMB.

[9]  K. Tomer,et al.  Detection and sequencing of phosphopeptides , 2000, Journal of the American Society for Mass Spectrometry.

[10]  R. Aebersold,et al.  Data-dependent modulation of solid-phase extraction capillary electrophoresis for the analysis of complex peptide and phosphopeptide mixtures by tandem mass spectrometry: application to endothelial nitric oxide synthase. , 1999, Analytical chemistry.

[11]  S. Carr,et al.  Phosphopeptide/phosphoprotein mapping by electron capture dissociation mass spectrometry. , 2001, Analytical chemistry.

[12]  M F Bean,et al.  Collisional fragmentation of glycopeptides by electrospray ionization LC/MS and LC/MS/MS: methods for selective detection of glycopeptides in protein digests. , 1993, Analytical chemistry.

[13]  T. Hunter,et al.  Phosphopeptide mapping and phosphoamino acid analysis by electrophoresis and chromatography on thin‐layer cellulose plates , 1994, Electrophoresis.

[14]  F W McLafferty,et al.  Localization of labile posttranslational modifications by electron capture dissociation: the case of gamma-carboxyglutamic acid. , 1999, Analytical chemistry.

[15]  Steven A Carr,et al.  Mass Spectrometry-based Methods for Phosphorylation Site Mapping of Hyperphosphorylated Proteins Applied to Net1, a Regulator of Exit from Mitosis in Yeast* , 2002, Molecular & Cellular Proteomics.

[16]  F. McLafferty,et al.  Electron Capture Dissociation of Multiply Charged Protein Cations. A Nonergodic Process , 1998 .

[17]  S. Carr,et al.  A multidimensional electrospray MS-based approach to phosphopeptide mapping. , 2001, Analytical chemistry.

[18]  D. Kassel,et al.  Identification of phosphorylated peptides from complex mixtures using negative-ion orifice-potential stepping and capillary liquid chromatography/electrospray ionization mass spectrometry. , 1994, Rapid communications in mass spectrometry : RCM.

[19]  J. Olsen,et al.  Electron capture dissociation of singly and multiply phosphorylated peptides. , 2000, Rapid communications in mass spectrometry : RCM.

[20]  D. Creasy,et al.  Error tolerant searching of uninterpreted tandem mass spectrometry data , 2002, Proteomics.

[21]  E. Pasquale,et al.  Multiple in vivo tyrosine phosphorylation sites in EphB receptors. , 1999, Biochemistry.

[22]  M. Posewitz,et al.  Immobilized gallium(III) affinity chromatography of phosphopeptides. , 1999, Analytical chemistry.

[23]  J. Stults,et al.  Electrospray ionization mass spectrometry of phosphopeptides isolated by on-line immobilized metal-ion affinity chromatography , 1993, Journal of the American Society for Mass Spectrometry.

[24]  M. Fussenegger,et al.  Use of antibodies for detection of phosphorylated proteins separated by two‐dimensional gel electrophoresis , 2001, Proteomics.

[25]  W. Lehmann,et al.  Identification of protein phosphorylation sites by combination of elastase digestion, immobilized metal affinity chromatography, and quadrupole‐time of flight tandem mass spectrometry , 2002, Proteomics.

[26]  W. Lehmann,et al.  Analysis of protein phosphorylation by capillary liquid chromatography coupled to element mass spectrometry with 31P detection and to electrospray mass spectrometry. , 2001, Analytical chemistry.

[27]  M. Cobb,et al.  ERKs, extracellular signal-regulated MAP-2 kinases. , 1991, Current opinion in cell biology.

[28]  J. Gebler,et al.  Selective analysis of phosphopeptides within a protein mixture by chemical modification, reversible biotinylation and mass spectrometry. , 2001, Rapid communications in mass spectrometry : RCM.

[29]  R. Aebersold,et al.  Identification by electrospray ionization mass spectrometry of the sites of tyrosine phosphorylation induced in activated Jurkat T cells on the protein tyrosine kinase ZAP-70. , 1994, The Journal of biological chemistry.

[30]  Richard D. Smith,et al.  Phosphoprotein isotope-coded affinity tag approach for isolating and quantitating phosphopeptides in proteome-wide analyses. , 2001, Analytical chemistry.

[31]  A. Burlingame,et al.  Analysis of phospho- and glycopolypeptides with infrared matrix-assisted laser desorption and ionization. , 1998, Analytical chemistry.

[32]  O. Fiehn,et al.  Comparative quantification and identification of phosphoproteins using stable isotope labeling and liquid chromatography / mass spectrometry , 2022 .

[33]  S. Carr,et al.  Phosphopeptide analysis by matrix-assisted laser desorption time-of-flight mass spectrometry. , 1996, Analytical chemistry.

[34]  P. Roepstorff,et al.  Phospho‐proteomics: Evaluation of the use of enzymatic de‐phosphorylation and differential mass spectrometric peptide mass mapping for site specific phosphorylation assignment in proteins separated by gel electrophoresis , 2001, Proteomics.

[35]  J. Shabanowitz,et al.  Phosphoproteome analysis by mass spectrometry and its application to Saccharomyces cerevisiae , 2002, Nature Biotechnology.

[36]  Mikhail S. Gelfand,et al.  Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors , 2001, Bioinform..

[37]  G. Neubauer,et al.  Parent ion scans of unseparated peptide mixtures. , 1996, Analytical chemistry.

[38]  M. F. Bean,et al.  Selective detection of phosphopeptides in complex mixtures by electrospray liquid chromatography/mass spectrometry , 1993, Journal of the American Society for Mass Spectrometry.

[39]  J. DeGnore,et al.  Fragmentation of phosphopeptides in an ion trap mass spectrometer , 1998, Journal of the American Society for Mass Spectrometry.

[40]  R. Aebersold,et al.  A systematic approach to the analysis of protein phosphorylation , 2001, Nature Biotechnology.