Nannocystin A: an Elongation Factor 1 Inhibitor from Myxobacteria with Differential Anti-Cancer Properties.

Cultivation of myxobacteria of the Nannocystis genus led to the isolation and structure elucidation of a class of novel cyclic lactone inhibitors of elongation factor 1. Whole genome sequence analysis and annotation enabled identification of the putative biosynthetic cluster and synthesis process. In biological assays the compounds displayed anti-fungal and cytotoxic activity. Combined genetic and proteomic approaches identified the eukaryotic translation elongation factor 1α (EF-1α) as the primary target for this compound class. Nannocystin A (1) displayed differential activity across various cancer cell lines and EEF1A1 expression levels appear to be the main differentiating factor. Biochemical and genetic evidence support an overlapping binding site of 1 with the anti-cancer compound didemnin B on EF-1α. This myxobacterial chemotype thus offers an interesting starting point for further investigations of the potential of therapeutics targeting elongation factor 1.

[1]  R. Müller,et al.  Myxobacterial secondary metabolites: bioactivities and modes-of-action. , 2010, Natural product reports.

[2]  S. Schreiber,et al.  GTP-dependent binding of the antiproliferative agent didemnin to elongation factor 1 alpha. , 1994, The Journal of biological chemistry.

[3]  Judith N. Currano,et al.  Didemnins, tamandarins and related natural products. , 2012, Natural product reports.

[4]  K. Lewis,et al.  A new antibiotic kills pathogens without detectable resistance , 2015, Nature.

[5]  Ronald W. Davis,et al.  Functional profiling of the Saccharomyces cerevisiae genome , 2002, Nature.

[6]  P. Toogood,et al.  Mechanism of protein synthesis inhibition by didemnin B in vitro. , 1995, Biochemistry.

[7]  Ronald W. Davis,et al.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis. , 1999, Science.

[8]  Elizabeth A. Winzeler,et al.  Genomic profiling of drug sensitivities via induced haploinsufficiency , 1999, Nature Genetics.

[9]  J. Kaplan,et al.  Genome-wide Analysis of Iron-dependent Growth Reveals a Novel Yeast Gene Required for Vacuolar Acidification* , 2004, Journal of Biological Chemistry.

[10]  John A. Tallarico,et al.  High-resolution chemical dissection of a model eukaryote reveals targets, pathways and gene functions. , 2014, Microbiological research.

[11]  J. Piel Approaches to capturing and designing biologically active small molecules produced by uncultured microbes. , 2011, Annual review of microbiology.

[12]  Y. Surh,et al.  eEF1A2 as a Putative Oncogene , 2009, Annals of the New York Academy of Sciences.

[13]  M. Marra,et al.  The translation elongation factor 1A in tumorigenesis, signal transduction and apoptosis: Review article , 2004, Amino Acids.

[14]  Adam A. Margolin,et al.  The Cancer Cell Line Encyclopedia enables predictive modeling of anticancer drug sensitivity , 2012, Nature.

[15]  M. G. Jeppesen,et al.  Mg2+ and a Key Lysine Modulate Exchange Activity of Eukaryotic Translation Elongation Factor 1Bα* , 2006, Journal of Biological Chemistry.

[16]  G. Kiser,et al.  IV. Yeast sequencing reports. GUF1, a gene encoding a novel evolutionarily conserved gtpase in budding yeast , 1995, Yeast.

[17]  Kai Blin,et al.  antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences , 2011, Nucleic Acids Res..

[18]  P. Philippsen,et al.  Identification of two genes coding for the translation elongation factor EF‐1 alpha of S. cerevisiae. , 1984, The EMBO journal.

[19]  R. G. Hughes,et al.  Didemnins: antiviral and antitumor depsipeptides from a caribbean tunicate. , 1981, Science.

[20]  Christian Rinke,et al.  An environmental bacterial taxon with a large and distinct metabolic repertoire , 2014, Nature.

[21]  David J Newman,et al.  Natural products: a continuing source of novel drug leads. , 2013, Biochimica et biophysica acta.

[22]  J. Fujimoto,et al.  Bacterial production of the tunicate-derived antitumor cyclic depsipeptide didemnin B. , 2011, Journal of natural products.