Shifting hydrogen bonds may produce flexible transmembrane helices
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[1] Elizabeth E Howell,et al. A survey of aspartate-phenylalanine and glutamate-phenylalanine interactions in the protein data bank: searching for anion-π pairs. , 2011, Biochemistry.
[2] H. Khorana,et al. Denaturation and renaturation of bacteriorhodopsin in detergents and lipid-detergent mixtures. , 1982, The Journal of biological chemistry.
[3] Collaborative Computational,et al. The CCP4 suite: programs for protein crystallography. , 1994, Acta crystallographica. Section D, Biological crystallography.
[4] T. Haltia,et al. Forces and factors that contribute to the structural stability of membrane proteins. , 1995, Biochimica et biophysica acta.
[5] J. Thornton,et al. Satisfying hydrogen bonding potential in proteins. , 1994, Journal of molecular biology.
[6] Daniel Hornburg,et al. Residue-specific side-chain packing determines the backbone dynamics of transmembrane model helices. , 2010, Biophysical journal.
[7] T. Hori,et al. Internally bridging water molecule in transmembrane alpha-helical kink. , 2010, Current opinion in structural biology.
[8] J. Bowie. Solving the membrane protein folding problem , 2005, Nature.
[9] Alessandro Senes,et al. Membrane protein folding: beyond the two stage model , 2003, FEBS letters.
[10] Christian Blouin,et al. Improved Helix and Kink Characterization in Membrane Proteins Allows Evaluation of Kink Sequence Predictors , 2010, J. Chem. Inf. Model..
[11] M. Sansom,et al. Helix dynamics in a membrane transport protein: comparative simulations of the glycerol-3-phosphate transporter and its constituent helices , 2008, Molecular membrane biology.
[12] Ilan Samish,et al. TMKink: A method to predict transmembrane helix kinks , 2011, Protein science : a publication of the Protein Society.
[13] J. Bowie,et al. Crystallization of bacteriorhodopsin from bicelle formulations at room temperature , 2005, Protein science : a publication of the Protein Society.
[14] A. Brunger. Version 1.2 of the Crystallography and NMR system , 2007, Nature Protocols.
[15] G. Marshall,et al. THE MOLTEN HELIX : EFFECTS OF SOLVATION ON THE ALPHA - TO 310-HELICAL TRANSITION , 1995 .
[16] D. Oesterhelt,et al. Isolation of the cell membrane of Halobacterium halobium and its fractionation into red and purple membrane. , 1974, Methods in enzymology.
[17] J. Lanyi,et al. Secondary and tertiary structure of bacteriorhodopsin in the SDS denatured state. , 2012, Biochemistry.
[18] Min Goo Lee,et al. A protein sequence that can encode native structure by disfavoring alternate conformations , 2002, Nature Structural Biology.
[19] P. Nissen,et al. The sarcoplasmic Ca2+-ATPase: design of a perfect chemi-osmotic pump , 2010, Quarterly Reviews of Biophysics.
[20] A. I. Popov,et al. Three-dimensional structure of (1-71)bacterioopsin solubilized in methanol/chloroform and SDS micelles determined by 15N-1H heteronuclear NMR spectroscopy. , 1994, European journal of biochemistry.
[21] J Novotny,et al. Non-alpha-helical elements modulate polytopic membrane protein architecture. , 2001, Journal of molecular biology.
[22] P. Emsley,et al. Features and development of Coot , 2010, Acta crystallographica. Section D, Biological crystallography.
[23] Virgil L. Woods,et al. Modest stabilization by most hydrogen-bonded side-chain interactions in membrane proteins , 2008, Nature.
[24] Structure determination of plastocyanin from a specimen with a hemihedral twinning fraction of one-half. , 1993, Acta crystallographica. Section D, Biological crystallography.
[25] B. Wallace,et al. Slow alpha helix formation during folding of a membrane protein. , 1997, Biochemistry.
[26] J. Bowie,et al. Bicelle crystallization: a new method for crystallizing membrane proteins yields a monomeric bacteriorhodopsin structure. , 2002, Journal of molecular biology.
[27] F. Cordes,et al. Conformational dynamics of helix S6 from Shaker potassium channel: simulation studies. , 2002, Biopolymers.
[28] Robert M. Graham,et al. Non-α-helical elements modulate polytopic membrane protein architecture , 2001 .
[29] Duan Yang,et al. Proline substitutions are not easily accommodated in a membrane protein. , 2004, Journal of molecular biology.
[30] James U Bowie,et al. Membrane protein folding: how important are hydrogen bonds? , 2011, Current opinion in structural biology.
[31] J. Bowie,et al. A method for assessing the stability of a membrane protein. , 1997, Biochemistry.
[32] Robert M. Sweet,et al. Macromolecular Crystallography: Part A , 1997 .
[33] F. Cordes,et al. Proline-induced distortions of transmembrane helices. , 2002, Journal of molecular biology.
[34] J. Bowie,et al. Thermodynamic stability of bacteriorhodopsin mutants measured relative to the bacterioopsin unfolded state. , 2012, Biochimica et biophysica acta.
[35] Nagarajan Vaidehi,et al. Position of helical kinks in membrane protein crystal structures and the accuracy of computational prediction. , 2009, Journal of molecular graphics & modelling.
[36] Robert Preissner,et al. Structural features of transmembrane helices , 2004, FEBS letters.
[37] J. Ballesteros,et al. Beta2 adrenergic receptor activation. Modulation of the proline kink in transmembrane 6 by a rotamer toggle switch. , 2002, The Journal of biological chemistry.
[38] Duan Yang,et al. The evolution of transmembrane helix kinks and the structural diversity of G protein-coupled receptors. , 2004, Proceedings of the National Academy of Sciences of the United States of America.
[39] Erik Lindahl,et al. Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel , 2009, PLoS Comput. Biol..
[40] S. White,et al. Membrane protein folding and stability: physical principles. , 1999, Annual review of biophysics and biomolecular structure.
[41] W. Kabsch,et al. Dictionary of protein secondary structure: Pattern recognition of hydrogen‐bonded and geometrical features , 1983, Biopolymers.
[42] Duan Yang,et al. Side-chain contributions to membrane protein structure and stability. , 2004, Journal of molecular biology.
[43] T O Yeates,et al. Detecting and overcoming crystal twinning. , 1997, Methods in enzymology.
[44] Klaus Schulten,et al. Biophysical Journal, Volume 98 Supporting Material Calculation of the Gating Charge for the Kv1.2 Voltage–activated Potassium Channel , 2022 .
[45] Conformational dynamics of the inner pore helix of voltage-gated potassium channels. , 2009, The Journal of chemical physics.