The Global Genome Biodiversity Network (GGBN) Data Standard specification
暂无分享,去创建一个
Xin Zhou | Yong Zhang | Renzo Kottmann | John Wieczorek | Jamie Whitacre | Walter G. Berendsohn | Anton Güntsch | Gabriele Dröge | Patricia Kelbert | Tim Robertson | Christopher Meyer | Ivaylo Kostadinov | John Deck | Jonathan Coddington | Boyke Bunk | Sara Y. Nussbeck | Markus Döring | Éamonn Ó Tuama | Rita T. Lawlor | Katharine Barker | Paul Flemons | Birgit Gemeinholzer | Carola Söhngen | Thomas Orrell | Ole Seberg | Erica E. Benson | Carol Butler | E. Margaret Casey | Tom Hollowell | Chris Lyal | Jacqueline Mackenzie-Dodds | Daniel Mulcahy | Gitte Petersen | Pelin Yilmaz | Holger Zetzsche | J. Coddington | E. Benson | G. Petersen | Thomas M. Orrell | R. Lawlor | P. Flemons | R. Kottmann | Ivaylo Kostadinov | C. Meyer | John Wieczorek | Markus Döring | Tim Robertson | B. Gemeinholzer | Pelin Yilmaz | Jacqueline Mackenzie-Dodds | G. Dröge | A. Güntsch | W. Berendsohn | D. Mulcahy | Thomas H. Hollowell | B. Bunk | J. Deck | J. Whitacre | C. Lyal | K. Barker | Xin Zhou | C. Butler | C. Söhngen | Yong Zhang | Holger Zetzsche | S. Nussbeck | Ole Seberg | E. M. Casey | P. Kelbert | Katharine Barker | É. Ó. Tuama
[1] Gabriele Droege,et al. “Life in Data”—Outcome of a Multi-Disciplinary, Interactive Biobanking Conference Session on Sample Data , 2016, Biopreservation and biobanking.
[2] G. Cochrane,et al. The International Nucleotide Sequence Database Collaboration , 2011, Nucleic Acids Res..
[3] Erica E Benson,et al. Standard PREanalytical Codes: A New Paradigm for Environmental Biobanking Sectors Explored in Algal Culture Collections. , 2011, Biopreservation and biobanking.
[4] Renzo Kottmann,et al. A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). , 2008, Omics : a journal of integrative biology.
[5] O. Haddrath,et al. Sampling Vertebrate Collections for Molecular Research : Practice and Policies , 2008 .
[6] J. Coddington,et al. Greater than X kb: a quantitative assessment of preservation conditions on genomic DNA quality, and a proposed standard for genome-quality DNA , 2016, PeerJ.
[7] Natalia N. Ivanova,et al. A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea , 2009, Nature.
[8] E. Benson,et al. Can Biospecimen Science Expedite the Ex Situ Conservation of Plants in Megadiverse Countries? A Focus on the Flora of Brazil , 2013 .
[9] R DeSalle,et al. Character-based DNA barcoding allows discrimination of genera, species and populations in Odonata , 2007, Proceedings of the Royal Society B: Biological Sciences.
[10] Matthias Buck,et al. The Nagoya Protocol on Access to Genetic Resources and the Fair and Equitable Sharing of Benefits Arising from their Utilization to the Convention on Biological Diversity , 2011 .
[11] Umberto Nanni,et al. Standard preanalytical coding for biospecimens: review and implementation of the Sample PREanalytical Code (SPREC). , 2012, Biopreservation and biobanking.
[12] John Wieczorek,et al. Darwin Core: An Evolving Community-Developed Biodiversity Data Standard , 2012, PloS one.
[13] B. Misof,et al. How to tackle the molecular species inventory for an industrialized nation-lessons from the first phase of the German Barcode of Life initiative GBOL (2012-2015). , 2016, Genome.
[14] K. Sirotkin,et al. The NCBI dbGaP database of genotypes and phenotypes , 2007, Nature Genetics.
[15] H. Chandler. Database , 1985 .
[16] C. Marshall,et al. Has the Earth’s sixth mass extinction already arrived? , 2011, Nature.
[17] Chris F. Taylor,et al. The minimum information about a genome sequence (MIGS) specification , 2008, Nature Biotechnology.
[18] Ana M. Aransay,et al. Field Guidelines for Genetic Experimental Designs in High-Throughput Sequencing , 2016, Springer International Publishing.
[19] Peter H. Watson,et al. An online tool for improving biospecimen data element reporting. , 2012, Biopreservation and biobanking.
[20] Gabriele Dröge,et al. The Global Genome Biodiversity Network (GGBN) Data Portal , 2013, Nucleic Acids Res..
[21] Jamie Whitacre,et al. B-HIT - A Tool for Harvesting and Indexing Biodiversity Data , 2015, PloS one.
[22] M. Wilkinson,et al. Quantitative evaluation of bias in PCR amplification and next-generation sequencing derived from metabarcoding samples , 2015, Analytical and Bioanalytical Chemistry.
[23] Anton Güntsch,et al. The DNA bank network: the start from a german initiative. , 2011, Biopreservation and biobanking.
[24] Renzo Kottmann,et al. Microbiological Common Language (MCL): a standard for electronic information exchange in the Microbial Commons. , 2010, Research in microbiology.
[25] Umberto Nanni,et al. SPRECware: Software Tools for Standard PREanalytical Code (SPREC) Labeling – Effective Exchange and Search of Stored Biospecimens , 2012, The International journal of biological markers.
[26] F. Betsou,et al. Standard Preanalytical Coding for Biospecimens: Defining the Sample PREanalytical Code , 2010, Cancer Epidemiology, Biomarkers & Prevention.
[27] ISBER NEWS,et al. International society for biological and environmental repositories. , 2009, Biopreservation and biobanking.
[28] K. Mullis,et al. Specific enzymatic amplification of DNA in vitro: the polymerase chain reaction. , 1986, Cold Spring Harbor symposia on quantitative biology.
[29] Ana M. Aransay,et al. The High-Throughput Sequencing Technologies Triple-W Discussion: Why Use HTS, What Is the Optimal HTS Method to Use, and Which Data Analysis Workflow to Follow , 2016 .
[30] M. Vicente. DNA banks: providing novel options for genebanks? , 2006 .
[31] Walter G. Berendsohn,et al. International Networking of Large Amounts of Primary Biodiversity Data , 2009, GI Jahrestagung.
[32] Brian K. Schmidt,et al. Project Description: DNA Barcodes of Bird Species in the National Museum of Natural History, Smithsonian Institution, USA , 2011, ZooKeys.
[33] M. Snyder,et al. High-throughput sequencing technologies. , 2015, Molecular cell.
[34] William Stafford Noble,et al. Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project , 2007, Nature.
[35] Walter G. Berendsohn,et al. The ABCD of primary biodiversity data access , 2012 .
[36] Masato Kimura,et al. NCBI’s Database of Genotypes and Phenotypes: dbGaP , 2013, Nucleic Acids Res..
[37] Sharon R Grossman,et al. Integrating common and rare genetic variation in diverse human populations , 2010, Nature.
[38] F. Sanger,et al. DNA sequencing with chain-terminating inhibitors. , 1977, Proceedings of the National Academy of Sciences of the United States of America.
[39] E. Myers,et al. Basic local alignment search tool. , 1990, Journal of molecular biology.
[40] R. DeSalle,et al. Mitochondrial DNA extraction and sequencing of formalin-fixed archival snake tissue , 2008, Mitochondrial DNA.
[41] Emily S. Charlson,et al. Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications , 2011, Nature Biotechnology.
[42] Javier Otegui,et al. The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet , 2014, PloS one.
[43] Andreas R. Pfenning,et al. Comparative genomics reveals insights into avian genome evolution and adaptation , 2014, Science.
[44] Gontran Sonet,et al. Utility of GenBank and the Barcode of Life Data Systems (BOLD) for the identification of forensically important Diptera from Belgium and France , 2013, ZooKeys.