Cross-Domain Medical Image Translation by Shared Latent Gaussian Mixture Model

Current deep learning based segmentation models generalize poorly to different domains due to the lack of sufficient labelled image data. An important example in radiology is generalizing from contrast enhanced CT to non-contrast CT. In real-world clinical applications, cross-domain image analysis tools are in high demand since medical images from different domains are generally used to achieve precise diagnoses. For example, contrast enhanced CT at different phases are used to enhance certain pathologies or internal organs. Many existing cross-domain image-to-image translation models show impressive results on large organ segmentation by successfully preserving large structures across domains. However, such models lack the ability to preserve fine structures during the translation process, which is significant for many clinical applications, such as segmenting small calcified plaques in the aorta and pelvic arteries. In order to preserve fine structures during medical image translation, we propose a patch-based model using shared latent variables from a Gaussian mixture. We compare our image translation framework to several state-of-the-art methods on cross-domain image translation and show our model does a better job preserving fine structures. The superior performance of our model is verified by performing two tasks with the translated images - detection and segmentation of aortic plaques and pancreas segmentation. We expect the utility of our framework will extend to other problems beyond segmentation due to the improved quality of the generated images and enhanced ability to preserve small structures.

[1]  Ronald M. Summers,et al.  Image Translation by Latent Union of Subspaces for Cross-Domain Plaque Detection , 2020, ArXiv.

[2]  Youbao Tang,et al.  CT Image Enhancement Using Stacked Generative Adversarial Networks and Transfer Learning for Lesion Segmentation Improvement , 2018, MLMI@MICCAI.

[3]  Ross B. Girshick,et al.  Mask R-CNN , 2017, 1703.06870.

[4]  Ronald M. Summers,et al.  DeepOrgan: Multi-level Deep Convolutional Networks for Automated Pancreas Segmentation , 2015, MICCAI.

[5]  Stephen M. Moore,et al.  The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository , 2013, Journal of Digital Imaging.

[6]  Feiping Nie,et al.  Multi-Modal Joint Clustering With Application for Unsupervised Attribute Discovery , 2018, IEEE Transactions on Image Processing.

[7]  R. Summers,et al.  Abnormal Chest X-Ray Identification With Generative Adversarial One-Class Classifier , 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

[8]  Yuxing Tang,et al.  CT-realistic data augmentation using generative adversarial network for robust lymph node segmentation , 2019, Medical Imaging.

[9]  Dustin Tran,et al.  Edward: A library for probabilistic modeling, inference, and criticism , 2016, ArXiv.

[10]  拓海 杉山,et al.  “Unpaired Image-to-Image Translation using Cycle-Consistent Adversarial Networks”の学習報告 , 2017 .

[11]  Jan Kautz,et al.  Unsupervised Image-to-Image Translation Networks , 2017, NIPS.

[12]  Simon Lucey,et al.  Complex Non-rigid Motion 3D Reconstruction by Union of Subspaces , 2014, 2014 IEEE Conference on Computer Vision and Pattern Recognition.

[13]  Swapnil Y Parab,et al.  Coronary artery calcification on chest computed tomography scan – Anaesthetic implications , 2019, Indian journal of anaesthesia.

[14]  Yuxing Tang,et al.  TUNA-Net: Task-oriented UNsupervised Adversarial Network for Disease Recognition in Cross-Domain Chest X-rays , 2019, MICCAI.

[15]  Jan Kautz,et al.  Multimodal Unsupervised Image-to-Image Translation , 2018, ECCV.

[16]  Yuxing Tang,et al.  XLSor: A Robust and Accurate Lung Segmentor on Chest X-Rays Using Criss-Cross Attention and Customized Radiorealistic Abnormalities Generation , 2018, MIDL.

[17]  Murray Shanahan,et al.  Deep Unsupervised Clustering with Gaussian Mixture Variational Autoencoders , 2016, ArXiv.

[18]  Ronald M. Summers,et al.  A Semi-Supervised CNN Learning Method with Pseudo-class Labels for Atherosclerotic Vascular Calcification Detection , 2019, 2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019).

[19]  Ronald M. Summers,et al.  Multilevel UNet for pancreas segmentation from non-contrast CT scans through domain adaptation , 2020, Medical Imaging.

[20]  Le Lu,et al.  DeepLesion: automated mining of large-scale lesion annotations and universal lesion detection with deep learning , 2018, Journal of medical imaging.

[21]  Ronald M. Summers,et al.  A large annotated medical image dataset for the development and evaluation of segmentation algorithms , 2019, ArXiv.

[22]  Ling Shao,et al.  Hi-Net: Hybrid-Fusion Network for Multi-Modal MR Image Synthesis , 2020, IEEE Transactions on Medical Imaging.

[23]  Youbao Tang,et al.  CT-Realistic Lung Nodule Simulation from 3D Conditional Generative Adversarial Networks for Robust Lung Segmentation , 2018, MICCAI.