Characterization and comparative genomic analyses of complete chloroplast genome on Trema orientalis L.

[1]  Rong-rong Yan,et al.  Characterization of the Plastid Genome of the Vulnerable Endemic Indosasa lipoensis and Phylogenetic Analysis , 2023, Diversity.

[2]  Xiao Ma,et al.  Analysis of Complete Chloroplast Genome: Structure, Phylogenetic Relationships of Galega orientalis and Evolutionary Inference of Galegeae , 2023, Genes.

[3]  Jacqueline da Silva Batista,et al.  First DNA barcode efficiency assessment for an important ingredient in the Amazonian ayahuasca tea: mariri/jagube, Banisteriopsis (Malpighiaceae) , 2022, Genetic Resources and Crop Evolution.

[4]  Y. Wang,et al.  The first complete chloroplast genome of Vicatia thibetica de Boiss.: genome features, comparative analysis, and phylogenetic relationships , 2022, Physiology and Molecular Biology of Plants.

[5]  S. Zabin,et al.  Phenolic contents, anticancer, antioxidant, and antimicrobial capacities of MeOH extract from the aerial parts of Trema orientalis plant , 2022, Open Chemistry.

[6]  M. Jahan,et al.  Review on Trema orientalis as a potential bioresource in tropical countries , 2021, Trees.

[7]  Kun Sun,et al.  A molecular identification of medicinal Rheum Species cultivated germplasm from the northwest of China using DNA barcoding , 2021, Genetic Resources and Crop Evolution.

[8]  Xiaolei Yu,et al.  Transcriptome and Comparative Chloroplast Genome Analysis of Vincetoxicum versicolor: Insights Into Molecular Evolution and Phylogenetic Implication , 2021, Frontiers in Genetics.

[9]  A. Gao,et al.  Screening of sweet wampee [Clausena lansium (Lour.) Skeels] progenies in the early growth stage based on chloroplast genome analysis , 2021, Genetic Resources and Crop Evolution.

[10]  Xia Cheng,et al.  The complete chloroplast genome of Cannabis sativa variety Yunma 7 , 2021, Mitochondrial DNA. Part B, Resources.

[11]  C. Pizarro,et al.  Generation of Chloroplast Molecular Markers to Differentiate Sophora toromiro and Its Hybrids as a First Approach to Its Reintroduction in Rapa Nui (Easter Island) , 2021, Plants.

[12]  N. S. Judith,et al.  Quantitative Genetic Variation in Bark Stripping of Pinus radiata , 2020 .

[13]  Shuihan Zhang,et al.  The complete chloroplast genome of the rare species Epimedium tianmenshanensis and comparative analysis with related species , 2020, Physiology and Molecular Biology of Plants.

[14]  B. Ouyang,et al.  The complete mitochondrial genome of the chiltepin pepper (Capsicum annuum var. glabriusculum), the wild progenitor of Capsicum annuum L. , 2020, Mitochondrial DNA. Part B, Resources.

[15]  D. Schnell,et al.  Origins, function and regulation of the TOC-TIC general protein import machinery of plastids. , 2019, Journal of experimental botany.

[16]  A. Gul,et al.  Chloroplast Genome Sequence of Artemisia scoparia: Comparative Analyses and Screening of Mutational Hotspots , 2019, Plants.

[17]  E. van der Knaap,et al.  Pan-plastome approach empowers the assessment of genetic variation in cultivated Capsicum species , 2019, Horticulture Research.

[18]  T. Strzała,et al.  Genetic diversity and relationship between cultivated, weedy and wild rye species as revealed by chloroplast and mitochondrial DNA non-coding regions analysis , 2019, PloS one.

[19]  Tiantian Zhao,et al.  The complete chloroplast genomes of three Betulaceae species: implications for molecular phylogeny and historical biogeography , 2019, PeerJ.

[20]  C. Moritz,et al.  Genetic Diversity and Conservation Units: Dealing With the Species-Population Continuum in the Age of Genomics , 2018, Front. Ecol. Evol..

[21]  Jaakko Hyvönen,et al.  IRscope: an online program to visualize the junction sites of chloroplast genomes , 2018, Bioinform..

[22]  Rong‐Hua Zhang,et al.  The chloroplast genome of a rare and an endangered species Salweenia bouffordiana (Leguminosae) in China , 2018, Conservation Genetics Resources.

[23]  Dezhu Li,et al.  Plastome characteristics of Cannabaceae , 2018, Plant diversity.

[24]  J. Nantongo,et al.  Long‐term viability of populations of Prunus africana ((hook. f.) kalm.) in Mabira forest: implications for in situ conservation , 2018 .

[25]  Inkyu Park,et al.  The Complete Chloroplast Genome Sequences of Aconitum pseudolaeve and Aconitum longecassidatum, and Development of Molecular Markers for Distinguishing Species in the Aconitum Subgenus Lycoctonum , 2017, Molecules.

[26]  Yul-Ho Kim,et al.  Complete Chloroplast Genome Sequences and Comparative Analysis of Chenopodium quinoa and C. album , 2017, Front. Plant Sci..

[27]  R. Margis,et al.  The chloroplast genome sequence from Eugenia uniflora, a Myrtaceae from Neotropics , 2017, Plant Systematics and Evolution.

[28]  Axel Fischer,et al.  GeSeq – versatile and accurate annotation of organelle genomes , 2017, Nucleic Acids Res..

[29]  Uwe Scholz,et al.  MISA-web: a web server for microsatellite prediction , 2017, Bioinform..

[30]  Shilin Chen,et al.  Complete Chloroplast Genome of Medicinal Plant Lonicera japonica: Genome Rearrangement, Intron Gain and Loss, and Implications for Phylogenetic Studies , 2017, Molecules.

[31]  Guifang Zhao,et al.  Characterization of the complete chloroplast genome sequence of Primula veris (Ericales: Primulaceae) , 2016, Conservation Genetics Resources.

[32]  S. Schueler,et al.  Detection of Self Incompatibility Genotypes in Prunus africana: Characterization, Evolution and Spatial Analysis , 2016, PloS one.

[33]  Patricia P. Chan,et al.  tRNAscan-SE On-line: integrating search and context for analysis of transfer RNA genes , 2016, Nucleic Acids Res..

[34]  A. J. Bendich,et al.  The linear plastid chromosomes of maize: terminal sequences, structures, and implications for DNA replication , 2016, Current Genetics.

[35]  J. Lundberg,et al.  An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants : APG II THE ANGIOSPERM PHYLOGENY GROUP * , 2003 .

[36]  M. Chung,et al.  The Complete Chloroplast Genome Sequences of Three Veroniceae Species (Plantaginaceae): Comparative Analysis and Highly Divergent Regions , 2016, Front. Plant Sci..

[37]  I. Small,et al.  Integration of complete chloroplast genome sequences with small amplicon datasets improves phylogenetic resolution in Acacia. , 2016, Molecular phylogenetics and evolution.

[38]  M. Ashton,et al.  Differences in Survival and Growth Among Tropical Rain Forest Pioneer Tree Seedlings in Relation to Canopy Openness and Herbivory , 2014 .

[39]  R. Jansen,et al.  Reconstruction of the ancestral plastid genome in Geraniaceae reveals a correlation between genome rearrangements, repeats, and nucleotide substitution rates. , 2014, Molecular biology and evolution.

[40]  S. Franzel,et al.  Fodder trees for improving livestock productivity and smallholder livelihoods in Africa , 2014 .

[41]  F. Bakker,et al.  Molecular phylogenetics and character evolution of Cannabaceae , 2013 .

[42]  A. A. Garcia,et al.  Molecular polymorphism and linkage analysis in sweet passion fruit, an outcrossing species , 2013 .

[43]  Shane S. Sturrock,et al.  Geneious Basic: An integrated and extendable desktop software platform for the organization and analysis of sequence data , 2012, Bioinform..

[44]  P. Hollingsworth.  Refining the DNA barcode for land plants , 2011, Proceedings of the National Academy of Sciences.

[45]  D. Soltis,et al.  T HE AGE AND DIVERSIFICATION OF THE ANGIOSPERMS RE - REVISITED 1 , 2010 .

[46]  S. Tangphatsornruang,et al.  The Chloroplast Genome Sequence of Mungbean (Vigna radiata) Determined by High-throughput Pyrosequencing: Structural Organization and Phylogenetic Relationships , 2009, DNA research : an international journal for rapid publication of reports on genes and genomes.

[47]  James Leebens-Mack,et al.  Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns , 2007, Proceedings of the National Academy of Sciences.

[48]  Pamela S Soltis,et al.  Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms , 2007, Proceedings of the National Academy of Sciences.

[49]  R. Jansen,et al.  The complete chloroplast genome sequence of Citrus sinensis (L.) Osbeck var 'Ridge Pineapple': organization and phylogenetic relationships to other angiosperms , 2006, BMC Plant Biology.

[50]  Jeroen Raes,et al.  Functional divergence of proteins through frameshift mutations. , 2005, Trends in genetics : TIG.

[51]  L. Duret,et al.  Recombination drives the evolution of GC-content in the human genome. , 2004, Molecular biology and evolution.

[52]  M. Emes,et al.  NONPHOTOSYNTHETIC METABOLISM IN PLASTIDS. , 2003, Annual review of plant physiology and plant molecular biology.

[53]  R. Britten,et al.  Majority of divergence between closely related DNA samples is due to indels , 2003, Proceedings of the National Academy of Sciences of the United States of America.

[54]  Elena Conti,et al.  Urticalean rosids: circumscription, rosid ancestry, and phylogenetics based on rbcL, trnL-F, and ndhF sequences. , 2002, American journal of botany.

[55]  J. Stoye,et al.  REPuter: the manifold applications of repeat analysis on a genomic scale. , 2001, Nucleic acids research.

[56]  I. Galyuon,et al.  Trema orientalis Linn. Blume: A potential for prospecting for drugs for various uses , 2013, Pharmacognosy reviews.

[57]  J. Palmer,et al.  Comparative organization of chloroplast genomes. , 1985, Annual review of genetics.