Automated Detection of Clinically Significant Prostate Cancer in mp-MRI Images Based on an End-to-End Deep Neural Network

Automated methods for detecting clinically significant (CS) prostate cancer (PCa) in multi-parameter magnetic resonance images (mp-MRI) are of high demand. Existing methods typically employ several separate steps, each of which is optimized individually without considering the error tolerance of other steps. As a result, they could either involve unnecessary computational cost or suffer from errors accumulated over steps. In this paper, we present an automated CS PCa detection system, where all steps are optimized jointly in an end-to-end trainable deep neural network. The proposed neural network consists of concatenated subnets: 1) a novel tissue deformation network (TDN) for automated prostate detection and multimodal registration and 2) a dual-path convolutional neural network (CNN) for CS PCa detection. Three types of loss functions, i.e., classification loss, inconsistency loss, and overlap loss, are employed for optimizing all parameters of the proposed TDN and CNN. In the training phase, the two nets mutually affect each other and effectively guide registration and extraction of representative CS PCa-relevant features to achieve results with sufficient accuracy. The entire network is trained in a weakly supervised manner by providing only image-level annotations (i.e., presence/absence of PCa) without exact priors of lesions’ locations. Compared with most existing systems which require supervised labels, e.g., manual delineation of PCa lesions, it is much more convenient for clinical usage. Comprehensive evaluation based on fivefold cross validation using 360 patient data demonstrates that our system achieves a high accuracy for CS PCa detection, i.e., a sensitivity of 0.6374 and 0.8978 at 0.1 and 1 false positives per normal/benign patient.

[1]  Dumitru Erhan,et al.  Going deeper with convolutions , 2014, 2015 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[2]  Guillaume Lemaitre Computer-aided diagnosis for prostate cancer using multi-parametric mri , 2016 .

[3]  Stephen M. Moore,et al.  The Cancer Imaging Archive (TCIA): Maintaining and Operating a Public Information Repository , 2013, Journal of Digital Imaging.

[4]  Carole Lartizien,et al.  Computer-aided diagnosis of prostate cancer in the peripheral zone using multiparametric MRI , 2012, Physics in medicine and biology.

[5]  Nico Karssemeijer,et al.  Computer-Aided Detection of Prostate Cancer in MRI , 2014, IEEE Transactions on Medical Imaging.

[6]  Sergey Ioffe,et al.  Rethinking the Inception Architecture for Computer Vision , 2015, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[7]  Guy Marchal,et al.  Multimodality image registration by maximization of mutual information , 1997, IEEE Transactions on Medical Imaging.

[8]  Yaozong Gao,et al.  Dual‐core steered non‐rigid registration for multi‐modal images via bi‐directional image synthesis , 2017, Medical Image Anal..

[9]  Gaël Varoquaux,et al.  Cross-validation failure: Small sample sizes lead to large error bars , 2017, NeuroImage.

[10]  Daniele Regge,et al.  A prostate CAD system based on multiparametric analysis of DCE T1-w, and DW automatically registered images , 2013, Medical Imaging.

[11]  Stefan Klein,et al.  Automatic segmentation of the prostate in 3D MR images by atlas matching using localized mutual information. , 2008, Medical physics.

[12]  Oguz Akin,et al.  Anatomic segmentation improves prostate cancer detection with artificial neural networks analysis of 1H magnetic resonance spectroscopic imaging , 2014, Journal of magnetic resonance imaging : JMRI.

[13]  Anant Madabhushi,et al.  Integrating structural and functional imaging for computer assisted detection of prostate cancer on multi-protocol in vivo 3 Tesla MRI , 2009, Medical Imaging.

[14]  P Tiwari,et al.  Multimodal wavelet embedding representation for data combination (MaWERiC): integrating magnetic resonance imaging and spectroscopy for prostate cancer detection , 2012, NMR in biomedicine.

[15]  Xiang Bai,et al.  Robust Scene Text Recognition with Automatic Rectification , 2016, 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[16]  Carole Lartizien,et al.  Kernel-Based Learning From Both Qualitative and Quantitative Labels: Application to Prostate Cancer Diagnosis Based on Multiparametric MR Imaging , 2014, IEEE Transactions on Image Processing.

[17]  Konstantinos Kamnitsas,et al.  Efficient multi‐scale 3D CNN with fully connected CRF for accurate brain lesion segmentation , 2016, Medical Image Anal..

[18]  Matthias Waldert,et al.  Prostate cancer in elderly men. , 2008, Reviews in urology.

[19]  William Wells,et al.  Detection of prostate cancer by integration of line-scan diffusion, T2-mapping and T2-weighted magnetic resonance imaging; a multichannel statistical classifier. , 2003, Medical physics.

[20]  Andrew Zisserman,et al.  Spatial Transformer Networks , 2015, NIPS.

[21]  Wei Li,et al.  Prostate cancer diagnosis using deep learning with 3D multiparametric MRI , 2017, Medical Imaging.

[22]  Karen E. Burtt,et al.  Computer Aided-Diagnosis of Prostate Cancer on Multiparametric MRI: A Technical Review of Current Research , 2014, BioMed research international.

[23]  Thomas Hambrock,et al.  Computerized analysis of prostate lesions in the peripheral zone using dynamic contrast enhanced MRI. , 2008, Medical physics.

[24]  Thomas Hambrock,et al.  Computer-assisted analysis of peripheral zone prostate lesions using T2-weighted and dynamic contrast enhanced T1-weighted MRI , 2010, Physics in medicine and biology.

[25]  Nico Karssemeijer,et al.  Automated computer-aided detection of prostate cancer in MR images: from a whole-organ to a zone-based approach , 2012, Medical Imaging.

[26]  Ronald M. Summers,et al.  A prostate cancer computer-aided diagnosis system using multimodal magnetic resonance imaging and targeted biopsy labels , 2013, Medical Imaging.

[27]  Dev P Chakraborty,et al.  A brief history of free-response receiver operating characteristic paradigm data analysis. , 2013, Academic radiology.

[28]  Xiang Zhang,et al.  OverFeat: Integrated Recognition, Localization and Detection using Convolutional Networks , 2013, ICLR.

[29]  A. Jemal,et al.  Cancer statistics, 2015 , 2015, CA: a cancer journal for clinicians.

[30]  N Karssemeijer,et al.  Automatic computer-aided detection of prostate cancer based on multiparametric magnetic resonance image analysis , 2012, Physics in medicine and biology.

[31]  Masoom A. Haider,et al.  Prostate cancer localization with multispectral MRI based on Relevance Vector Machines , 2009, 2009 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[32]  Carole Lartizien,et al.  Computer-aided diagnosis for prostate cancer detection in the peripheral zone via multisequence MRI , 2011, Medical Imaging.

[33]  Trevor Darrell,et al.  Fully Convolutional Networks for Semantic Segmentation , 2017, IEEE Transactions on Pattern Analysis and Machine Intelligence.

[34]  Guillaume Lemaitre,et al.  Computer-Aided Detection and diagnosis for prostate cancer based on mono and multi-parametric MRI: A review , 2015, Comput. Biol. Medicine.

[35]  Nacim Betrouni,et al.  Computer-assisted diagnosis of prostate cancer using DCE-MRI data: design, implementation and preliminary results , 2008, International Journal of Computer Assisted Radiology and Surgery.

[36]  Nico Karssemeijer,et al.  Automatic computer aided detection of abnormalities in multi-parametric prostate MRI , 2011, Medical Imaging.

[37]  Pieter C. Vos,et al.  Combining T2-weighted with dynamic MR images for computerized classification of prostate lesions , 2008, SPIE Medical Imaging.

[38]  Masoom A. Haider,et al.  Prostate Cancer Localization With Multispectral MRI Using Cost-Sensitive Support Vector Machines and Conditional Random Fields , 2010, IEEE Transactions on Image Processing.

[39]  Francesco Porpiglia,et al.  A fully automatic computer aided diagnosis system for peripheral zone prostate cancer detection using multi-parametric magnetic resonance imaging , 2015, Comput. Medical Imaging Graph..

[40]  Aaron Fenster,et al.  Three-Dimensional Nonrigid MR-TRUS Registration Using Dual Optimization , 2015, IEEE Transactions on Medical Imaging.

[41]  M. Giger,et al.  Quantitative analysis of multiparametric prostate MR images: differentiation between prostate cancer and normal tissue and correlation with Gleason score--a computer-aided diagnosis development study. , 2013, Radiology.

[42]  Wenyu Liu,et al.  Multiple Instance Detection Network with Online Instance Classifier Refinement , 2017, 2017 IEEE Conference on Computer Vision and Pattern Recognition (CVPR).

[43]  Wenyu Liu,et al.  Deep patch learning for weakly supervised object classification and discovery , 2017, Pattern Recognit..

[44]  Anant Madabhushi,et al.  Multi-kernel graph embedding for detection, Gleason grading of prostate cancer via MRI/MRS , 2013, Medical Image Anal..

[45]  Joseph O. Deasy,et al.  Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images , 2015, Proceedings of the National Academy of Sciences.

[46]  Thomas Brox,et al.  U-Net: Convolutional Networks for Biomedical Image Segmentation , 2015, MICCAI.

[47]  Fred L. Bookstein,et al.  Principal Warps: Thin-Plate Splines and the Decomposition of Deformations , 1989, IEEE Trans. Pattern Anal. Mach. Intell..

[48]  Zhiwei Wang,et al.  Co‐trained convolutional neural networks for automated detection of prostate cancer in multi‐parametric MRI , 2017, Medical Image Anal..

[49]  N. Otsu A threshold selection method from gray level histograms , 1979 .