Connecting data, tools and people across Europe: ELIXIR’s response to the COVID-19 pandemic

ELIXIR, the European research infrastructure for life science data, provides open access to data, tools and workflows in the response to the COVID-19 pandemic. ELIXIR’s 23 nodes have reacted swiftly to support researchers in their combined efforts against the pandemic setting out three joint priorities: 1. Connecting national COVID-19 data platforms to create federated European COVID-19 Data Spaces; 2. Fostering good data management to make COVID-19 data open, FAIR and reusable over the long term; 3. Providing open tools, workflows and computational resources to drive reproducible and collaborative science. ELIXIR’s strategy is based on the support given by our national nodes - collectively spanning over 200 institutes - to research projects and on partnering with community initiatives to drive development and adoption of good data practice and community driven standards. ELIXIR Nodes provide support activities locally and internationally, from provisioning compute capabilities to helping collect viral sequence data from hospitals. Some Nodes have prioritised access to their national cloud and compute facilities for all COVID-19 research projects, while others have developed tools to search, access and share all data related to the pandemic in a national healthcare setting.

[1]  G. Gibson Going to the negative: genomics for optimized medical prescription , 2018, Nature Reviews Genetics.

[2]  Piers Millett,et al.  Developing Global Norms for Sharing Data and Results during Public Health Emergencies , 2016, PLoS medicine.

[3]  Pardis C. Sabeti,et al.  Data sharing: Make outbreak research open access , 2015, Nature.

[4]  F. Sanz,et al.  Towards a European health research and innovation cloud (HRIC) , 2020, Genome Medicine.

[5]  D. Carr,et al.  Sharing Research Data to Improve Public Health , 2015, Journal of empirical research on human research ethics : JERHRE.

[6]  Sumiko Mekaru,et al.  Open access epidemiological data from the COVID-19 outbreak , 2020, The Lancet Infectious Diseases.

[7]  Sophie Delaunay,et al.  Knowledge sharing during public health emergencies: from global call to effective implementation , 2016, Bulletin of the World Health Organization.

[8]  John Chilton,et al.  No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics , 2020, PLoS pathogens.

[9]  C. Rivers,et al.  Make Data Sharing Routine to Prepare for Public Health Emergencies , 2016, PLoS medicine.

[10]  D. Mietchen Data sharing in public health emergencies , 2016 .

[11]  Rolf Apweiler,et al.  The European Bioinformatics Institute in 2017: data coordination and integration , 2017, Nucleic Acids Res..

[12]  Özlem Tastan Bishop,et al.  H3ABioNet, a sustainable pan-African bioinformatics network for human heredity and health in Africa , 2016, Genome research.

[13]  Arcadi Navarro,et al.  Leveraging European infrastructures to access 1 million human genomes by 2022 , 2019, Nature Reviews Genetics.

[14]  Arcadi Navarro,et al.  The European Genome-phenome Archive of human data consented for biomedical research , 2015, Nature Genetics.

[15]  A. Levine Academics are from Mars, humanitarians are from Venus: Finding common ground to improve research during humanitarian emergencies , 2016, Clinical trials.

[16]  Anton Nekrutenko,et al.  No more business as usual: Agile and effective responses to emerging pathogen threats require open data and open analytics , 2020, bioRxiv.