Neuraminidase inhibitor resistance in influenza viruses and laboratory testing methods.

Infection with influenza viruses, including seasonal, avian and pandemic viruses, remains a worldwide public health problem. Although influenza virus infection is both vaccine preventable and drug treatable, high rates of mutation and reassortment of viruses can result in reduced effectiveness of vaccines or drugs. Currently, two classes of drugs, adamantanes (M2 blockers) and neuraminidase (NA) inhibitors (NAIs), are available for treatment and chemoprophylaxis of influenza infections. Given these limited antiviral therapy options, resistance to anti-influenza drugs is a constant concern. The emergence and global spread of adamantane-resistant H3N2 viruses in 2003-2004 and oseltamivir-resistant seasonal H1N1 viruses in 2007-2009 demonstrated the ability of drug-resistant variants to rapidly become predominant worldwide. Since the 2009 H1N1 pandemic, all influenza viruses circulating in humans are M2-blocker-resistant and, in general, NAI-susceptible. However, pandemic H1N1 viruses with resistance to the NAI oseltamivir have been reported. 'Permissive' drift mutations and reassortment of viral gene segments have been proposed as mechanisms underlying the retained replicative fitness of resistant viruses. Nevertheless, the precise role of these genetic changes in the efficient transmission and maintenance of resistant viruses in the absence of drug pressure remains poorly understood. In this review, we summarize NAI resistance in influenza viruses and discuss recent challenges in laboratory testing methods. Close monitoring of antiviral resistance among all influenza viruses, both locally and globally, are essential to inform public health strategies for the control of influenza infections.

[1]  R. Webster,et al.  Neuraminidase Inhibitor-Resistant Influenza Viruses May Differ Substantially in Fitness and Transmissibility , 2005, Antimicrobial Agents and Chemotherapy.

[2]  G. Boivin,et al.  Characterization of multidrug-resistant influenza A/H3N2 viruses shed during 1 year by an immunocompromised child. , 2006, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[3]  A J Elliott,et al.  BCX-1812 (RWJ-270201): discovery of a novel, highly potent, orally active, and selective influenza neuraminidase inhibitor through structure-based drug design. , 2000, Journal of medicinal chemistry.

[4]  A. Kelso,et al.  A comparison of pyrosequencing and neuraminidase inhibition assays for the detection of oseltamivir-resistant pandemic influenza A(H1N1) 2009 viruses. , 2011, Antiviral research.

[5]  P. Colman,et al.  Mutation in the influenza virus neuraminidase gene resulting in decreased sensitivity to the neuraminidase inhibitor 4-guanidino-Neu5Ac2en leads to instability of the enzyme. , 1996, Virology.

[6]  Nicole M. Bouvier,et al.  Oseltamivir-Resistant Influenza A Viruses Are Transmitted Efficiently among Guinea Pigs by Direct Contact but Not by Aerosol , 2008, Journal of Virology.

[7]  L. Gubareva,et al.  Oseltamivir resistance mutation N294S in human influenza A(H5N1) virus in Egypt. , 2009, Journal of infection and public health.

[8]  A. Kelso,et al.  Zanamivir-Resistant Influenza Viruses with a Novel Neuraminidase Mutation , 2009, Journal of Virology.

[9]  B. Lina,et al.  Detection of human influenza A (H1N1) and B strains with reduced sensitivity to neuraminidase inhibitors. , 2008, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[10]  G. Kobinger,et al.  Oseltamivir-Resistant Pandemic A/H1N1 Virus Is as Virulent as Its Wild-Type Counterpart in Mice and Ferrets , 2010, PLoS pathogens.

[11]  Ha T. Nguyen,et al.  Comprehensive assessment of 2009 Pandemic Influenza a (H1N1) Virus Drug Susceptibility in vitro , 2010, Antiviral therapy.

[12]  Lynnette Brammer,et al.  Infections with oseltamivir-resistant influenza A(H1N1) virus in the United States. , 2009, JAMA.

[13]  Arjun Srinivasan,et al.  Cluster of oseltamivir-resistant 2009 pandemic influenza A (H1N1) virus infections on a hospital ward among immunocompromised patients--North Carolina, 2009. , 2011, The Journal of infectious diseases.

[14]  M. Lawrence,et al.  Sequence and structure alignment of paramyxovirus hemagglutinin-neuraminidase with influenza virus neuraminidase , 1993, Journal of virology.

[15]  Mark A. Miller,et al.  The genesis and spread of reassortment human influenza A/H3N2 viruses conferring adamantane resistance. , 2007, Molecular biology and evolution.

[16]  R. Davey,et al.  Targeting pandemic influenza: a primer on influenza antivirals and drug resistance. , 2010, The Journal of antimicrobial chemotherapy.

[17]  Guy Boivin,et al.  Generation and characterization of recombinant pandemic influenza A(H1N1) viruses resistant to neuraminidase inhibitors. , 2011, The Journal of infectious diseases.

[18]  R. Webster,et al.  Effect of Neuraminidase Inhibitor–Resistant Mutations on Pathogenicity of Clade 2.2 A/Turkey/15/06 (H5N1) Influenza Virus in Ferrets , 2010, PLoS pathogens.

[19]  G. Boivin,et al.  Effect of the neuraminidase mutation H274Y conferring resistance to oseltamivir on the replicative capacity and virulence of old and recent human influenza A(H1N1) viruses. , 2010, The Journal of infectious diseases.

[20]  R. Webster,et al.  Emergence of H5N1 avian influenza viruses with reduced sensitivity to neuraminidase inhibitors and novel reassortants in Lao People's Democratic Republic. , 2010, The Journal of general virology.

[21]  I. Barr,et al.  Oseltamivir Resistance and the H274Y Neuraminidase Mutation in Seasonal, Pandemic and Highly Pathogenic Influenza Viruses , 2012, Drugs.

[22]  M. Kiso,et al.  Emergence of influenza B viruses with reduced sensitivity to neuraminidase inhibitors. , 2007, JAMA.

[23]  F. Hayden,et al.  Emerging influenza antiviral resistance threats. , 2011, The Journal of infectious diseases.

[24]  R. Pebody,et al.  Continued emergence and changing epidemiology of oseltamivir-resistant influenza A(H1N1)2009 virus, United Kingdom, winter 2010/11. , 2011, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[25]  Ha T. Nguyen,et al.  Neuraminidase Inhibitor Susceptibility Testing in Human Influenza Viruses: A Laboratory Surveillance Perspective , 2010, Viruses.

[26]  Ha T. Nguyen,et al.  Assessment of Pandemic and Seasonal Influenza A (H1N1) Virus Susceptibility to Neuraminidase Inhibitors in Three Enzyme Activity Inhibition Assays , 2010, Antimicrobial Agents and Chemotherapy.

[27]  Catherine Macken,et al.  Detection of Influenza Viruses Resistant to Neuraminidase Inhibitors in Global Surveillance during the First 3 Years of Their Use , 2006, Antimicrobial Agents and Chemotherapy.

[28]  W. Barclay,et al.  Pandemic H1N1 2009 influenza virus with the H275Y oseltamivir resistance neuraminidase mutation shows a small compromise in enzyme activity and viral fitness , 2010, The Journal of antimicrobial chemotherapy.

[29]  T. Meningher,et al.  Possible Transmission of Pandemic (HIN1) 2009 Virus with Oseltamivir Resistance , 2010, Emerging infectious diseases.

[30]  R. Garten,et al.  Detection of antiviral resistance and genetic lineage markers in influenza B virus neuraminidase using pyrosequencing. , 2010, Antiviral research.

[31]  R. Webster,et al.  Characterization of mutants of influenza A virus selected with the neuraminidase inhibitor 4-guanidino-Neu5Ac2en , 1996, Journal of virology.

[32]  Hideo Goto,et al.  Avian flu: Isolation of drug-resistant H5N1 virus , 2005, Nature.

[33]  Ha T. Nguyen,et al.  Recovery of a multidrug-resistant strain of pandemic influenza A 2009 (H1N1) virus carrying a dual H275Y/I223R mutation from a child after prolonged treatment with oseltamivir. , 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[34]  F. Hayden,et al.  Neuraminidase Sequence Analysis and Susceptibilities of Influenza Virus Clinical Isolates to Zanamivir and Oseltamivir , 2003, Antimicrobial Agents and Chemotherapy.

[35]  R. Russell,et al.  Combinatorial Effect of Two Framework Mutations (E119V and I222L) in the Neuraminidase Active Site of H3N2 Influenza Virus on Resistance to Oseltamivir , 2011, Antimicrobial Agents and Chemotherapy.

[36]  Ron A M Fouchier,et al.  Antigenic and Genetic Characteristics of Swine-Origin 2009 A(H1N1) Influenza Viruses Circulating in Humans , 2009, Science.

[37]  F. Aoki,et al.  Influenza Virus Susceptibility and Resistance to Oseltamivir , 2005, Antiviral therapy.

[38]  R. Bethell,et al.  In vitro selection and characterisation of influenza B/Beijing/1/87 isolates with altered susceptibility to zanamivir. , 1999, Virology.

[39]  R. Webster,et al.  Oseltamivir-resistant Influenza A and B Viruses Pre- and Postantiviral Therapy in Children and Young Adults With Cancer , 2011, The Pediatric infectious disease journal.

[40]  S. Pada,et al.  Overview/reflections on the 2009 H1N1 pandemic. , 2011, Microbes and infection.

[41]  T. Lam,et al.  Features of the new pandemic influenza A/H1N1/2009 virus: virology, epidemiology, clinical and public health aspects , 2010, Current opinion in pulmonary medicine.

[42]  C. Boucher,et al.  Emergence of a multidrug-resistant pandemic influenza A (H1N1) virus. , 2010, The New England journal of medicine.

[43]  E. López,et al.  Emergence of intratreatment resistance to oseltamivir in pandemic influenza a H1N1 2009 virus , 2010, Antiviral therapy.

[44]  P. Horby,et al.  A community cluster of oseltamivir-resistant cases of 2009 H1N1 influenza. , 2010, The New England journal of medicine.

[45]  M. Eichelberger,et al.  Rapid selection of oseltamivir- and peramivir-resistant pandemic H1N1 virus during therapy in 2 immunocompromised hosts. , 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[46]  F. Hayden,et al.  Recovery of drug-resistant influenza virus from immunocompromised patients: a case series. , 2006, The Journal of infectious diseases.

[47]  H. Klenk,et al.  Functional balance between haemagglutinin and neuraminidase in influenza virus infections , 2002, Reviews in medical virology.

[48]  P. Buchy,et al.  Neuraminidase Inhibitor Sensitivity and Receptor-Binding Specificity of Cambodian Clade 1 Highly Pathogenic H5N1 Influenza Virus , 2011, Antimicrobial Agents and Chemotherapy.

[49]  M. Zambon,et al.  Rapid Quantitation of Neuraminidase Inhibitor Drug Resistance in Influenza virus Quasispecies , 2008, Antiviral therapy.

[50]  Ji-Rong Yang,et al.  Reassortment and Mutations Associated with Emergence and Spread of Oseltamivir-Resistant Seasonal Influenza A/H1N1 Viruses in 2005–2009 , 2011, PloS one.

[51]  A. Sutton,et al.  Effectiveness of neuraminidase inhibitors in treatment and prevention of influenza A and B: systematic review and meta-analyses of randomised controlled trials , 2003, BMJ : British Medical Journal.

[52]  L. Gubareva,et al.  Detection of E119V and E119I Mutations in Influenza A (H3N2) Viruses Isolated from an Immunocompromised Patient: Challenges in Diagnosis of Oseltamivir Resistance , 2010, Antimicrobial Agents and Chemotherapy.

[53]  Ji-Rong Yang,et al.  Early findings of oseltamivir-resistant pandemic (H1N1) 2009 influenza A viruses in Taiwan. , 2010, Antiviral research.

[54]  A. Hurt,et al.  The detection of oseltamivir-resistant pandemic influenza A/H1N1 2009 viruses using a real-time RT-PCR assay. , 2010, Journal of virological methods.

[55]  Larisa V. Gubareva,et al.  Surveillance for Neuraminidase Inhibitor Resistance among Human Influenza A and B Viruses Circulating Worldwide from 2004 to 2008 , 2008, Antimicrobial Agents and Chemotherapy.

[56]  R. Webster,et al.  Oseltamivir–Resistant Pandemic H1N1/2009 Influenza Virus Possesses Lower Transmissibility and Fitness in Ferrets , 2010, PLoS pathogens.

[57]  L. Gubareva,et al.  Antiviral treatment of patients with oseltamivir-resistant and oseltamivir-susceptible seasonal Influenza A (H1N1) infection during the 2007-2008 influenza season in the United States. , 2010, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[58]  Xiyan Xu,et al.  Incidence of adamantane resistance among influenza A (H3N2) viruses isolated worldwide from 1994 to 2005: a cause for concern , 2005, The Lancet.

[59]  Eiryo Kawakami,et al.  Frequency of drug-resistant viruses and virus shedding in pediatric influenza patients treated with neuraminidase inhibitors. , 2011, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[60]  L. Gubareva,et al.  Molecular mechanisms of influenza virus resistance to neuraminidase inhibitors. , 2004, Virus research.

[61]  G. Kochs,et al.  Oseltamivir-Resistant Variants of the 2009 Pandemic H1N1 Influenza A Virus Are Not Attenuated in the Guinea Pig and Ferret Transmission Models , 2010, Journal of Virology.

[62]  David W. Smith,et al.  Increased detection in Australia and Singapore of a novel influenza A(H1N1)2009 variant with reduced oseltamivir and zanamivir sensitivity due to a S247N neuraminidase mutation. , 2011, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

[63]  Timothy B. Stockwell,et al.  Deep sequencing reveals mixed infection with 2009 pandemic influenza A (H1N1) virus strains and the emergence of oseltamivir resistance. , 2011, The Journal of infectious diseases.

[64]  A. Bermingham,et al.  Neuraminidase inhibitor resistance after oseltamivir treatment of acute influenza A and B in children. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[65]  C. Wolfe,et al.  Pandemic (H1N1) 2009 and Oseltamivir Resistance in Hematology/Oncology Patients , 2010, Emerging infectious diseases.

[66]  I. Barr,et al.  Assessing the development of oseltamivir and zanamivir resistance in A(H5N1) influenza viruses using a ferret model. , 2010, Antiviral research.

[67]  Maria Zambon,et al.  Antiviral resistance during the 2009 influenza A H1N1 pandemic: public health, laboratory, and clinical perspectives. , 2012, The Lancet. Infectious diseases.

[68]  Bin Wang,et al.  Oseltamivir Resistance in Adult Oncology and Hematology Patients Infected with Pandemic (H1N1) 2009 Virus, Australia , 2010, Emerging infectious diseases.

[69]  Ryo Takano,et al.  Characterization of Oseltamivir-Resistant 2009 H1N1 Pandemic Influenza A Viruses , 2010, PLoS pathogens.

[70]  S. Kashiwagi,et al.  Clinical effectiveness of oseltamivir for influenza A(H1N1) virus with H274Y neuraminidase mutation. , 2009, The Journal of infection.

[71]  C. Beauchemin,et al.  The I222V Neuraminidase Mutation Has a Compensatory Role in Replication of an Oseltamivir-Resistant Influenza Virus A/H3N2 E119V Mutant , 2010, Journal of Clinical Microbiology.

[72]  Phillip Andrew Reece,et al.  Neuraminidase inhibitor resistance in influenza viruses , 2007, Journal of medical virology.

[73]  Michael Shaw,et al.  Analysis of influenza viruses from patients clinically suspected of infection with an oseltamivir resistant virus during the 2009 pandemic in the United States. , 2012, Antiviral research.

[74]  E. Tuomanen,et al.  Intravenous zanamivir for oseltamivir-resistant 2009 H1N1 influenza. , 2010, The New England journal of medicine.

[75]  G. Boivin,et al.  Characterization of drug-resistant recombinant influenza A/H1N1 viruses selected in vitro with peramivir and zanamivir. , 2007, Antiviral research.

[76]  R. Webby,et al.  Pandemic (H1N1) 2009 and Seasonal Influenza A (H1N1) Co-infection, New Zealand, 2009 , 2010, Emerging Infectious Diseases.

[77]  D. Operario,et al.  Highly Sensitive and Quantitative Detection of the H274Y Oseltamivir Resistance Mutation in Seasonal A/H1N1 Influenza Virus , 2010, Journal of Clinical Microbiology.

[78]  Steven J. Gamblin,et al.  Influenza Hemagglutinin and Neuraminidase Membrane Glycoproteins , 2010, The Journal of Biological Chemistry.

[79]  L. Gubareva,et al.  Characteristics of Patients with Oseltamivir-Resistant Pandemic (H1N1) 2009, United States , 2011, Emerging infectious diseases.

[80]  W. Barclay,et al.  Characterization of recombinant influenza B viruses with key neuraminidase inhibitor resistance mutations. , 2005, The Journal of antimicrobial chemotherapy.

[81]  R. Garten,et al.  Dual resistance to adamantanes and oseltamivir among seasonal influenza A(H1N1) viruses: 2008-2010. , 2011, The Journal of infectious diseases.

[82]  F. Rovida,et al.  First case in Italy of acquired resistance to oseltamivir in an immunocompromised patient with influenza A/H1N1v infection. , 2010, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[83]  Yoshihiro Kawaoka,et al.  oseltamivir: descriptive study , 2022 .

[84]  R. Webster,et al.  Catalytic and framework mutations in the neuraminidase active site of influenza viruses that are resistant to 4-guanidino-Neu5Ac2en , 1997, Journal of virology.

[85]  Guy Boivin,et al.  Impact of Neuraminidase Mutations Conferring Influenza Resistance to Neuraminidase Inhibitors in the N1 and N2 Genetic Backgrounds , 2006, Antiviral therapy.

[86]  I. Barr,et al.  Susceptibility of highly pathogenic A(H5N1) avian influenza viruses to the neuraminidase inhibitors and adamantanes. , 2007, Antiviral research.

[87]  Xiyan Xu,et al.  Surveillance of influenza isolates for susceptibility to neuraminidase inhibitors during the 2000-2002 influenza seasons. , 2004, Virus research.

[88]  I. Barr,et al.  Neuraminidase Inhibitor-Resistant and -Sensitive Influenza B Viruses Isolated from an Untreated Human Patient , 2006, Antimicrobial Agents and Chemotherapy.

[89]  K. Thorlund,et al.  Systematic review of influenza resistance to the neuraminidase inhibitors , 2011, BMC infectious diseases.

[90]  P. Colman New antivirals and drug resistance. , 2009, Annual review of biochemistry.

[91]  R. Webster,et al.  Reassortment and Insertion-Deletion Are Strategies for the Evolution of Influenza B Viruses in Nature , 1999, Journal of Virology.

[92]  Ha T. Nguyen,et al.  Host cell selection of influenza neuraminidase variants: implications for drug resistance monitoring in A(H1N1) viruses. , 2010, Antiviral research.

[93]  L. Gubareva,et al.  Current challenges in the risk assessment of neuraminidase inhibitor-resistant influenza viruses. , 2010, The Journal of infectious diseases.

[94]  S. Kashiwagi,et al.  Clinical effectiveness of oseltamivir and zanamivir for treatment of influenza A virus subtype H1N1 with the H274Y mutation: a Japanese, multicenter study of the 2007-2008 and 2008-2009 influenza seasons. , 2009, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

[95]  E. Cox,et al.  The Emergency Use Authorization of peramivir for treatment of 2009 H1N1 influenza. , 2009, The New England journal of medicine.

[96]  R. Webster,et al.  Evidence for zanamivir resistance in an immunocompromised child infected with influenza B virus. , 1998, The Journal of infectious diseases.

[97]  B. Lina,et al.  Mutations of neuraminidase implicated in neuraminidase inhibitors resistance. , 2008, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.

[98]  R. Saito,et al.  Rare Influenza A (H3N2) Variants with Reduced Sensitivity to Antiviral Drugs , 2010, Emerging infectious diseases.

[99]  P. Colman,et al.  Mutations in a Conserved Residue in the Influenza Virus Neuraminidase Active Site Decreases Sensitivity to Neu5Ac2en-Derived Inhibitors , 1998, Journal of Virology.

[100]  J. Daly,et al.  Methods for determining resistance to neuraminidase inhibitors , 2001 .

[101]  M. Koopmans,et al.  Adamantane- and Oseltamivir-Resistant Seasonal A (H1N1) and Pandemic A (H1N1) 2009 Influenza Viruses in Guangdong, China, during 2008 and 2009 , 2011, Journal of Clinical Microbiology.

[102]  Janet Daly,et al.  Mutations conferring zanamivir resistance in human influenza virus N2 neuraminidases compromise virus fitness and are not stably maintained in vitro. , 2006, The Journal of antimicrobial chemotherapy.

[103]  Sebastian Maurer-Stroh,et al.  Emergence of Oseltamivir-Resistant Pandemic (H1N1) 2009 Virus within 48 Hours , 2010, Emerging infectious diseases.

[104]  L. Gubareva,et al.  Influenza genome analysis using pyrosequencing method: current applications for a moving target , 2009, Expert review of molecular diagnostics.

[105]  I. Barr,et al.  In Vitro Generation of Neuraminidase Inhibitor Resistance in A(H5N1) Influenza Viruses , 2009, Antimicrobial Agents and Chemotherapy.

[106]  Vasiliy P. Mishin,et al.  Susceptibilities of Antiviral-Resistant Influenza Viruses to Novel Neuraminidase Inhibitors , 2005, Antimicrobial Agents and Chemotherapy.

[107]  R. Garten,et al.  Detection of Molecular Markers of Drug Resistance in 2009 Pandemic Influenza A (H1N1) Viruses by Pyrosequencing , 2009, Antimicrobial Agents and Chemotherapy.

[108]  M. Eichelberger,et al.  Rapid selection of a transmissible multidrug-resistant influenza A/H3N2 virus in an immunocompromised host. , 2010, The Journal of infectious diseases.

[109]  Samir N. Patel,et al.  Multidrug-Resistant Pandemic (H1N1) 2009 Infection in Immunocompetent Child , 2011, Emerging infectious diseases.

[110]  David Baltimore,et al.  Permissive Secondary Mutations Enable the Evolution of Influenza Oseltamivir Resistance , 2010, Science.

[111]  R. Webster,et al.  Importance of Neuraminidase Active-Site Residues to the Neuraminidase Inhibitor Resistance of Influenza Viruses , 2006, Journal of Virology.

[112]  C. Fegan,et al.  Evidence of person-to-person transmission of oseltamivir-resistant pandemic influenza A(H1N1) 2009 virus in a hematology unit. , 2011, The Journal of infectious diseases.