An advanced 3D CT system with the capability to scan parts sizing from 3 mm up to 5000 mm was developed. The newly designed non destructive inspection system overcomes existing limitations of conventional CT systems in terms of part size and resolution. Reconstruction and scan algorithms were developed that allow achieving three-dimensional information of material and geometry in large automotive bodies with a resolution of up to 30 µm. In micro 3D CT mode a resolution of up to 3 µm can be achieved. The development of the mechatronic inspection system includes aspects of mechanics, electronics, software, and algorithms. For the manipulation of the full range of parts a high precision manipulation system and an industrial robot are used. The system allows the car manufacturer to inspect non-destructively a variety of join connections in car body parts. The capability of the system is demonstrated by different applications.