Role of Clinicogenomics in Infectious Disease Diagnostics and Public Health Microbiology
暂无分享,去创建一个
G. Weinstock | M. Pallen | E. Pamer | A. van Belkum | W. Dunne | L. Westblade | A. Grundhoff | W. Michael Dunne | Lars F. Westblade | G. Weinstock | Eric G. Pamer
[1] Phelim Bradley,et al. Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study , 2015, The Lancet. Infectious diseases.
[2] G. Kahlmeter,et al. The 2014 Garrod Lecture: EUCAST - are we heading towards international agreement? , 2015, The Journal of antimicrobial chemotherapy.
[3] H. Bayley,et al. Nucleobase Recognition by Truncated α-Hemolysin Pores. , 2015, ACS nano.
[4] Jacob J. Schmidt,et al. Research highlights: nanopore protein detection and analysis. , 2015, Lab on a chip.
[5] Julian Parkhill,et al. Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes , 2015, The Journal of antimicrobial chemotherapy.
[6] Jonathan Wilksch,et al. Genomic analysis of diversity, population structure, virulence, and antimicrobial resistance in Klebsiella pneumoniae, an urgent threat to public health , 2015, Proceedings of the National Academy of Sciences.
[7] Nadia Drake,et al. How to catch a cloud , 2015, Nature.
[8] G. Aldrovandi,et al. A novel outbreak enterovirus D68 strain associated with acute flaccid myelitis cases in the USA (2012-14): a retrospective cohort study. , 2015, The Lancet. Infectious diseases.
[9] P. Ashton,et al. Rapid draft sequencing and real-time nanopore sequencing in a hospital outbreak of Salmonella , 2015, Genome Biology.
[10] M. Aepfelbacher,et al. Evaluation of Unbiased Next-Generation Sequencing of RNA (RNA-seq) as a Diagnostic Method in Influenza Virus-Positive Respiratory Samples , 2015, Journal of Clinical Microbiology.
[11] Gemma L. Kay,et al. Eighteenth-century genomes show that mixed infections were common at time of peak tuberculosis in Europe , 2015, Nature Communications.
[12] K. Daly. Circulating donor-derived cell-free DNA: a true biomarker for cardiac allograft rejection? , 2015, Annals of translational medicine.
[13] Julia Manasson,et al. Decreased Bacterial Diversity Characterizes the Altered Gut Microbiota in Patients With Psoriatic Arthritis, Resembling Dysbiosis in Inflammatory Bowel Disease , 2015, Arthritis & rheumatology.
[14] S. Dawson,et al. Circulating tumor cells and circulating tumor DNA for precision medicine: dream or reality? , 2014, Annals of oncology : official journal of the European Society for Medical Oncology.
[15] C. Constantinidou,et al. Genomic epidemiology of a protracted hospital outbreak caused by multidrug-resistant Acinetobacter baumannii in Birmingham, England , 2014, Genome Medicine.
[16] Paul Turner,et al. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses , 2014, BMC Biology.
[17] Carl Nathan,et al. Antibiotic resistance--problems, progress, and prospects. , 2014, The New England journal of medicine.
[18] M. Pallen,et al. Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer , 2014, PeerJ.
[19] A. Viale,et al. The effects of intestinal tract bacterial diversity on mortality following allogeneic hematopoietic stem cell transplantation. , 2014, Blood.
[20] J. Meschke,et al. Dead or Alive: Molecular Assessment of Microbial Viability , 2014, Applied and Environmental Microbiology.
[21] M. Zaharia,et al. A cloud-compatible bioinformatics pipeline for ultrarapid pathogen identification from next-generation sequencing of clinical samples , 2014, Genome Research.
[22] Joseph L DeRisi,et al. Actionable diagnosis of neuroleptospirosis by next-generation sequencing. , 2014, The New England journal of medicine.
[23] H. Rohde,et al. Rapid Metagenomic Diagnostics for Suspected Outbreak of Severe Pneumonia , 2014, Emerging infectious diseases.
[24] M. Pallen. Diagnostic metagenomics: potential applications to bacterial, viral and parasitic infections , 2014, Parasitology.
[25] Daniel J. Wilson,et al. Prediction of Staphylococcus aureus Antimicrobial Resistance by Whole-Genome Sequencing , 2014, Journal of Clinical Microbiology.
[26] J. Goedert,et al. Human gut microbiome and risk for colorectal cancer. , 2013, Journal of the National Cancer Institute.
[27] Ole Lund,et al. Rapid Whole-Genome Sequencing for Detection and Characterization of Microorganisms Directly from Clinical Samples , 2013, Journal of Clinical Microbiology.
[28] C. Buffie,et al. Microbiota-mediated colonization resistance against intestinal pathogens , 2013, Nature Reviews Immunology.
[29] E. Lavezzo,et al. Next-generation sequencing technologies in diagnostic virology. , 2013, Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology.
[30] Vincent Montoya,et al. Metagenomics for pathogen detection in public health , 2013, Genome Medicine.
[31] C. Huttenhower,et al. Expansion of intestinal Prevotella copri correlates with enhanced susceptibility to arthritis , 2013, eLife.
[32] M. Klein,et al. Sequences of multiple bacterial genomes and a Chlamydia trachomatis genotype from direct sequencing of DNA derived from a vaginal swab diagnostic specimen. , 2013, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.
[33] P. Turnbaugh,et al. Predicting and Manipulating Cardiac Drug Inactivation by the Human Gut Bacterium Eggerthella lenta , 2013, Science.
[34] J. Chan,et al. Metagenomic analysis of tuberculosis in a mummy. , 2013, The New England journal of medicine.
[35] C. Chiu. Viral pathogen discovery , 2013, Current Opinion in Microbiology.
[36] M. Pallen,et al. Genomics and outbreak investigation: from sequence to consequence , 2013, Genome Medicine.
[37] N. Loman,et al. A culture-independent sequence-based metagenomics approach to the investigation of an outbreak of Shiga-toxigenic Escherichia coli O104:H4. , 2013, JAMA.
[38] Alex van Belkum,et al. Next-Generation Antimicrobial Susceptibility Testing , 2013, Journal of Clinical Microbiology.
[39] L. Ursell,et al. Gut Microbiomes of Malawian Twin Pairs Discordant for Kwashiorkor , 2013, Science.
[40] Carolyn M Hutter,et al. Diarrhea etiology in a pediatric emergency department: a case control study. , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[41] N. Socci,et al. Intestinal domination and the risk of bacteremia in patients undergoing allogeneic hematopoietic stem cell transplantation. , 2012, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[42] Qiang Feng,et al. A metagenome-wide association study of gut microbiota in type 2 diabetes , 2012, Nature.
[43] Daniel J. Wilson,et al. Transforming clinical microbiology with bacterial genome sequencing , 2012, Nature Reviews Genetics.
[44] N. Loman,et al. High-throughput bacterial genome sequencing: an embarrassment of choice, a world of opportunity , 2012, Nature Reviews Microbiology.
[45] W. Dunne,et al. Next-generation and whole-genome sequencing in the diagnostic clinical microbiology laboratory , 2012, European Journal of Clinical Microbiology & Infectious Diseases.
[46] Benjamin B. Kaufmann,et al. RNA signatures allow rapid identification of pathogens and antibiotic susceptibilities , 2012, Proceedings of the National Academy of Sciences.
[47] N. Crowcroft,et al. Diagnostic Strategy Used To Establish Etiologies of Encephalitis in a Prospective Cohort of Patients in England , 2011, Journal of Clinical Microbiology.
[48] N. Loman,et al. Are diagnostic and public health bacteriology ready to become branches of genomic medicine? , 2011, Genome Medicine.
[49] Jose U. Scher,et al. The microbiome and rheumatoid arthritis , 2011, Nature Reviews Rheumatology.
[50] Nicholas J Loman,et al. High-throughput sequencing and clinical microbiology: progress, opportunities and challenges. , 2010, Current opinion in microbiology.
[51] Mark H. Wilcox,et al. Clostridium difficile infection: new developments in epidemiology and pathogenesis , 2009, Nature Reviews Microbiology.
[52] Les Dethlefsen,et al. The Pervasive Effects of an Antibiotic on the Human Gut Microbiota, as Revealed by Deep 16S rRNA Sequencing , 2008, PLoS biology.
[53] B. Roe,et al. A core gut microbiome in obese and lean twins , 2008, Nature.
[54] Gerard D. Wright. The antibiotic resistome: the nexus of chemical and genetic diversity , 2007, Nature Reviews Microbiology.
[55] J. Maselli,et al. Characterization of Viral Agents Causing Acute Respiratory Infection in a San Francisco University Medical Center Clinic during the Influenza Season , 2005, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
[56] J. Cebra,et al. Influences of microbiota on intestinal immune system development. , 1999, The American journal of clinical nutrition.
[57] Gary J. W. Liao,et al. Non-invasive prenatal testing using cell-free fetal DNA in maternal circulation. , 2014, Clinica chimica acta; international journal of clinical chemistry.