Low-Rank Tensor Models for Improved Multidimensional MRI: Application to Dynamic Cardiac $T_1$ Mapping

Multidimensional, multicontrast magnetic resonance imaging (MRI) has become increasingly available for comprehensive and time-efficient evaluation of various pathologies, providing large amounts of data and offering new opportunities for improved image reconstructions. Recently, a cardiac phase-resolved myocardial <inline-formula><tex-math notation="LaTeX">$T_1$</tex-math></inline-formula> mapping method has been introduced to provide dynamic information on tissue viability. Improved spatio-temporal resolution in clinically acceptable scan times is highly desirable but requires high acceleration factors. Tensors are well-suited to describe interdimensional hidden structures in such multi-dimensional datasets. In this study, we sought to utilize and compare different tensor decomposition methods, without the use of auxiliary navigator data. We explored multiple processing approaches in order to enable high-resolution cardiac phase-resolved myocardial <inline-formula><tex-math notation="LaTeX">$T_1$</tex-math></inline-formula> mapping. Eight different low-rank tensor approximation and processing approaches were evaluated using quantitative analysis of accuracy and precision in <inline-formula><tex-math notation="LaTeX">$T_1$</tex-math></inline-formula> maps acquired in six healthy volunteers. All methods provided comparable <inline-formula><tex-math notation="LaTeX">$T_1$</tex-math></inline-formula> values. However, the precision was significantly improved using local processing, as well as a direct tensor rank approximation. Low-rank tensor approximation approaches are well-suited to enable dynamic <inline-formula><tex-math notation="LaTeX">$T_1$</tex-math></inline-formula> mapping at high spatio-temporal resolutions.

[1]  Tamara G. Kolda,et al.  Tensor Decompositions and Applications , 2009, SIAM Rev..

[2]  Vahid Tarokh,et al.  Low‐dimensional‐structure self‐learning and thresholding: Regularization beyond compressed sensing for MRI Reconstruction , 2011, Magnetic resonance in medicine.

[3]  Guangming Shi,et al.  Compressive Sensing via Nonlocal Low-Rank Regularization , 2014, IEEE Transactions on Image Processing.

[4]  A. Manduca,et al.  Local versus Global Low-Rank Promotion in Dynamic MRI Series Reconstruction , 2010 .

[5]  P. Boesiger,et al.  SENSE: Sensitivity encoding for fast MRI , 1999, Magnetic resonance in medicine.

[6]  Stefan Neubauer,et al.  Shortened Modified Look-Locker Inversion recovery (ShMOLLI) for clinical myocardial T1-mapping at 1.5 and 3 T within a 9 heartbeat breathhold , 2010, Journal of cardiovascular magnetic resonance : official journal of the Society for Cardiovascular Magnetic Resonance.

[7]  Qi Yang,et al.  Magnetic resonance multitasking for motion-resolved quantitative cardiovascular imaging , 2018, Nature Biomedical Engineering.

[8]  T. Pock,et al.  Second order total generalized variation (TGV) for MRI , 2011, Magnetic resonance in medicine.

[9]  Hong Jiang,et al.  Dynamic imaging by model estimation , 2002, 5th IEEE EMBS International Summer School on Biomedical Imaging, 2002..

[10]  Jan Sijbers,et al.  Denoising of diffusion MRI using random matrix theory , 2016, NeuroImage.

[11]  J. Pauly,et al.  Accelerating parameter mapping with a locally low rank constraint , 2015, Magnetic resonance in medicine.

[12]  D. Donoho,et al.  Sparse MRI: The application of compressed sensing for rapid MR imaging , 2007, Magnetic resonance in medicine.

[13]  K. T. Block,et al.  Undersampled radial MRI with multiple coils. Iterative image reconstruction using a total variation constraint , 2007, Magnetic resonance in medicine.

[14]  Richard B Thompson,et al.  Saturation recovery single‐shot acquisition (SASHA) for myocardial T1 mapping , 2014, Magnetic resonance in medicine.

[15]  Timothy Edward John Behrens,et al.  Effects of image reconstruction on fiber orientation mapping from multichannel diffusion MRI: Reducing the noise floor using SENSE , 2013, Magnetic resonance in medicine.

[16]  J. Duerk,et al.  Magnetic Resonance Fingerprinting , 2013, Nature.

[17]  Armando Manduca,et al.  A Unified Tensor Regression Framework for Calibrationless Dynamic , Multi-Channel MRI Reconstruction , 2012 .

[18]  Vahid Tarokh,et al.  Compressed Sensing With Wavelet Domain Dependencies for Coronary MRI: A Retrospective Study , 2011, IEEE Transactions on Medical Imaging.

[19]  Zhi-Pei Liang,et al.  Spatiotemporal Imaging with Partially Separable Functions , 2007, 2007 Joint Meeting of the 6th International Symposium on Noninvasive Functional Source Imaging of the Brain and Heart and the International Conference on Functional Biomedical Imaging.

[20]  Steen Moeller,et al.  Scan‐specific robust artificial‐neural‐networks for k‐space interpolation (RAKI) reconstruction: Database‐free deep learning for fast imaging , 2018, Magnetic resonance in medicine.

[21]  D. Louis Collins,et al.  Diffusion Weighted Image Denoising Using Overcomplete Local PCA , 2013, PloS one.

[22]  Zhi-Pei Liang,et al.  SPATIOTEMPORAL IMAGINGWITH PARTIALLY SEPARABLE FUNCTIONS , 2007, 2007 4th IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

[23]  Mehmet Akçakaya,et al.  Temporally resolved parametric assessment of Z‐magnetization recovery (TOPAZ): Dynamic myocardial T1 mapping using a cine steady‐state look‐locker approach , 2018, Magnetic resonance in medicine.

[24]  Leon Axel,et al.  XD‐GRASP: Golden‐angle radial MRI with reconstruction of extra motion‐state dimensions using compressed sensing , 2016, Magnetic resonance in medicine.

[25]  Richard B. Thompson,et al.  Accuracy, precision, and reproducibility of four T1 mapping sequences: a head-to-head comparison of MOLLI, ShMOLLI, SASHA, and SAPPHIRE. , 2014, Radiology.

[26]  Robin M Heidemann,et al.  Generalized autocalibrating partially parallel acquisitions (GRAPPA) , 2002, Magnetic resonance in medicine.

[27]  Bryan A. Clifford,et al.  High‐resolution dynamic 31P‐MRSI using a low‐rank tensor model , 2017, Magnetic resonance in medicine.

[28]  R Deichmann,et al.  Quantification of T1 values by SNAPSHOT-FLASH NMR imaging , 1992 .

[29]  Mathews Jacob,et al.  Accelerated Dynamic MRI Exploiting Sparsity and Low-Rank Structure: k-t SLR , 2011, IEEE Transactions on Medical Imaging.

[30]  David M Higgins,et al.  Modified Look‐Locker inversion recovery (MOLLI) for high‐resolution T1 mapping of the heart , 2004, Magnetic resonance in medicine.

[31]  M. Stuber,et al.  Free‐running 4D whole‐heart self‐navigated golden angle MRI: Initial results , 2015, Magnetic resonance in medicine.

[32]  R. Bro PARAFAC. Tutorial and applications , 1997 .

[33]  Qi Yang,et al.  Free‐breathing, non‐ECG, continuous myocardial T1 mapping with cardiovascular magnetic resonance multitasking , 2018, Magnetic resonance in medicine.

[34]  Mehmet Akçakaya,et al.  Combined saturation/inversion recovery sequences for improved evaluation of scar and diffuse fibrosis in patients with arrhythmia or heart rate variability , 2014, Magnetic resonance in medicine.

[35]  Rachid Deriche,et al.  Multiple q-shell diffusion propagator imaging , 2011, Medical Image Anal..

[36]  Nikos D. Sidiropoulos,et al.  Tensor Decomposition for Signal Processing and Machine Learning , 2016, IEEE Transactions on Signal Processing.

[37]  Wei Dai,et al.  A Tensor Decomposition-Based Anomaly Detection Algorithm for Hyperspectral Image , 2016, IEEE Transactions on Geoscience and Remote Sensing.

[38]  Andrzej Cichocki,et al.  Tensor Decompositions for Signal Processing Applications: From two-way to multiway component analysis , 2014, IEEE Signal Processing Magazine.

[39]  J. Finn,et al.  Cardiac MR imaging: state of the technology. , 2006, Radiology.

[40]  Justin P. Haldar,et al.  Compressed-Sensing MRI With Random Encoding , 2011, IEEE Transactions on Medical Imaging.

[41]  Sebastian Weingärtner,et al.  Myocardial T1-mapping at 3T using saturation-recovery: reference values, precision and comparison with MOLLI , 2016, Journal of Cardiovascular Magnetic Resonance.

[42]  Stuart Crozier,et al.  Multidimensional Compressed Sensing MRI Using Tensor Decomposition-Based Sparsifying Transform , 2014, PloS one.

[43]  B. Recht,et al.  Tensor completion and low-n-rank tensor recovery via convex optimization , 2011 .

[44]  Jong Chul Ye,et al.  k‐t FOCUSS: A general compressed sensing framework for high resolution dynamic MRI , 2009, Magnetic resonance in medicine.

[45]  Justin P. Haldar,et al.  Image Reconstruction From Highly Undersampled $( {\bf k}, {t})$-Space Data With Joint Partial Separability and Sparsity Constraints , 2012, IEEE Transactions on Medical Imaging.

[46]  Terry K Koo,et al.  A Guideline of Selecting and Reporting Intraclass Correlation Coefficients for Reliability Research. , 2016, Journal of chiropractic medicine.

[47]  Li Feng,et al.  Four‐dimensional respiratory motion‐resolved whole heart coronary MR angiography , 2017, Magnetic resonance in medicine.

[48]  Daniel Messroghli,et al.  State of the Art: Clinical Applications of Cardiac T1 Mapping. , 2016, Radiology.

[49]  R. Henkelman,et al.  Trading off SNR and resolution in MR images , 2009, NMR in biomedicine.

[50]  Nikos D. Sidiropoulos,et al.  Locally Low-Rank tensor regularization for high-resolution quantitative dynamic MRI , 2017, 2017 IEEE 7th International Workshop on Computational Advances in Multi-Sensor Adaptive Processing (CAMSAP).

[51]  D. Sodickson,et al.  Comprehensive quantification of signal‐to‐noise ratio and g‐factor for image‐based and k‐space‐based parallel imaging reconstructions , 2008, Magnetic resonance in medicine.

[52]  Daniel K Sodickson,et al.  Low‐rank plus sparse matrix decomposition for accelerated dynamic MRI with separation of background and dynamic components , 2015, Magnetic resonance in medicine.

[53]  S. Moeller,et al.  Multi-scale locally low-rank noise reduction for high-resolution dynamic quantitative cardiac MRI , 2017, 2017 39th Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC).

[54]  Li Feng,et al.  5D whole‐heart sparse MRI , 2018, Magnetic resonance in medicine.

[55]  Justin P. Haldar,et al.  Low-Rank Modeling of Local $k$-Space Neighborhoods (LORAKS) for Constrained MRI , 2014, IEEE Transactions on Medical Imaging.

[56]  A. Manduca,et al.  CLEAR : Calibration-Free Parallel Imaging using Locally Low-Rank Encouraging Reconstruction , 2011 .

[57]  Zhi-Pei Liang,et al.  Accelerated High-Dimensional MR Imaging With Sparse Sampling Using Low-Rank Tensors , 2016, IEEE Transactions on Medical Imaging.

[58]  Demetri Terzopoulos,et al.  Multilinear Analysis of Image Ensembles: TensorFaces , 2002, ECCV.