Anthropogenic land-use activities within watersheds reduce comammox activity and diversity in rivers.

[1]  J. Ni,et al.  Comammox biogeography subject to anthropogenic interferences along a high-altitude river. , 2022, Water research.

[2]  J. Elser,et al.  Unintended nutrient imbalance induced by wastewater effluent inputs to receiving water and its ecological consequences , 2022, Frontiers of Environmental Science & Engineering.

[3]  Zhirong Zhao,et al.  Comammox bacteria predominate among ammonia-oxidizing microorganisms in municipal but not in refinery wastewater treatment plants. , 2022, Journal of environmental management.

[4]  Yong-guan Zhu,et al.  Towards a more labor-saving way in microbial ammonium oxidation: A review on complete ammonia oxidization (comammox). , 2022, The Science of the total environment.

[5]  Wei Zhou,et al.  Assessment of spike-AMP and qPCR-AMP in soil microbiota quantitative research , 2022, Soil Biology and Biochemistry.

[6]  Qihua Wu,et al.  pH and ammonium concentration are dominant predictors of the abundance and community composition of comammox bacteria in long-term fertilized Mollisol , 2021 .

[7]  G. Zhu,et al.  Comammox activity dominates nitrification process in the sediments of plateau wetland. , 2021, Water research.

[8]  Yi Li,et al.  Nitrogen cycling processes and the role of multi-trophic microbiota in dam-induced river-reservoir systems. , 2021, Water research.

[9]  Huibin Yu,et al.  Nitrogen retention effect of riparian zones in agricultural areas: A meta-analysis , 2021 .

[10]  G. He,et al.  Estimating NOx removal capacity of urban trees using stable isotope method: A case study of Beijing, China. , 2021, Environmental pollution.

[11]  W. McDowell,et al.  Distinctive Patterns and Controls of Nitrous Oxide Concentrations and Fluxes from Urban Inland Waters. , 2021, Environmental science & technology.

[12]  G. Zhu,et al.  Abundance and Functional Importance of Complete Ammonia Oxidizers and Other Nitrifiers in a Riparian Ecosystem. , 2021, Environmental science & technology.

[13]  Min Liu,et al.  N2O and NOy production by the comammox bacterium Nitrospira inopinata in comparison with canonical ammonia oxidizers. , 2020, Water research.

[14]  Min Liu,et al.  Distribution and Diversity of Comammox Nitrospira in Coastal Wetlands of China , 2020, Frontiers in Microbiology.

[15]  Qing‐Lin Chen,et al.  Niche differentiation of clade A comammox Nitrospira and canonical ammonia oxidizers in selected forest soils , 2020 .

[16]  S. Rhee,et al.  Quantification of Complete Ammonia Oxidizing (Comammox) Bacteria Clades and Strict Nitrite Oxidizers in Nitrospira Using Newly Designed Primers. , 2020, Applied and Environmental Microbiology.

[17]  D. Walsh,et al.  A large-scale assessment of lakes reveals a pervasive signal of land use on bacterial communities , 2020, The ISME Journal.

[18]  Lei Zhang,et al.  Strong linkages between dissolved organic matter and the aquatic bacterial community in an urban river. , 2020, Water research.

[19]  J. Ni,et al.  Comammox Nitrospira within the Yangtze River continuum: community, biogeography, and ecological drivers , 2020, The ISME Journal.

[20]  X. Xia,et al.  Ammonia oxidizers in river sediments of the Qinghai-Tibet Plateau and their adaptations to high-elevation conditions. , 2020, Water research.

[21]  Yuchun Wang,et al.  Diversity and abundance of comammox bacteria in the sediments of an urban lake , 2020, Journal of applied microbiology.

[22]  Minsheng Huang,et al.  Sustainability of riparian zones for non-point source pollution control in Chongming Island: Status, challenges, and perspectives , 2020 .

[23]  H. Tian,et al.  Increased global nitrous oxide emissions from streams and rivers in the Anthropocene , 2019, Nature Climate Change.

[24]  Yuting Zhou,et al.  Ubiquity, diversity, and activity of comammox Nitrospira in agricultural soils. , 2019, The Science of the total environment.

[25]  Ting Huang,et al.  High NO and N2O accumulation during nitrite denitrification in lab-scale sequencing batch reactor: influencing factors and mechanism , 2019, Environmental Science and Pollution Research.

[26]  G. Nicol,et al.  Comammox Nitrospira clade B contributes to nitrification in soil , 2019, Soil Biology and Biochemistry.

[27]  William A. Walters,et al.  Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2 , 2019, Nature Biotechnology.

[28]  C. Xie,et al.  The influence of revetment types on soil denitrification in the adjacent tidal urban riparian zones , 2019, Journal of Hydrology.

[29]  M. Thieme,et al.  Mapping the world’s free-flowing rivers , 2019, Nature.

[30]  Andreas Richter,et al.  Low yield and abiotic origin of N2O formed by the complete nitrifier Nitrospira inopinata , 2019, Nature Communications.

[31]  Yafeng Wang,et al.  Anthropogenic reactive nitrogen deposition and associated nutrient limitation effect on gross primary productivity in inland water of China , 2019, Journal of Cleaner Production.

[32]  Zhenyao Shen,et al.  Landscape- and climate change-induced hydrological alterations in the typically urbanized Beiyun River basin, Beijing, China , 2018, Stochastic Environmental Research and Risk Assessment.

[33]  S. Rhee,et al.  Ubiquity and Diversity of Complete Ammonia Oxidizers (Comammox) , 2018, Applied and Environmental Microbiology.

[34]  G. Velthof,et al.  The role of nitrifier denitrification in the production of nitrous oxide revisited , 2018, Soil Biology and Biochemistry.

[35]  R. Maranger,et al.  Stoichiometry of carbon, nitrogen, and phosphorus through the freshwater pipe , 2018 .

[36]  A. Eldyasti,et al.  Ammonia-Oxidizing Bacteria (AOB): opportunities and applications—a review , 2018, Reviews in Environmental Science and Bio/Technology.

[37]  Jia Gu,et al.  fastp: an ultra-fast all-in-one FASTQ preprocessor , 2018, bioRxiv.

[38]  B. Smets,et al.  Comammox Nitrospira are abundant ammonia oxidizers in diverse groundwater‐fed rapid sand filter communities , 2018, Environmental microbiology.

[39]  M. Kuypers,et al.  The microbial nitrogen-cycling network , 2018, Nature Reviews Microbiology.

[40]  C. Leigh,et al.  Flow intermittence and ecosystem services in rivers of the Anthropocene. , 2018, The Journal of applied ecology.

[41]  J. Prosser,et al.  Archaea produce lower yields of N2O than bacteria during aerobic ammonia oxidation in soil , 2017, Environmental microbiology.

[42]  Ji‐Zheng He,et al.  Comammox—a newly discovered nitrification process in the terrestrial nitrogen cycle , 2017, Journal of Soils and Sediments.

[43]  M. Wagner,et al.  Kinetic analysis of a complete nitrifier reveals an oligotrophic lifestyle , 2017, Nature.

[44]  K. Lancaster,et al.  Nitrosomonas europaea cytochrome P460 is a direct link between nitrification and nitrous oxide emission , 2016, Proceedings of the National Academy of Sciences.

[45]  Paul J. McMurdie,et al.  DADA2: High resolution sample inference from Illumina amplicon data , 2016, Nature Methods.

[46]  M. Stieglmeier,et al.  Pathways and key intermediates required for obligate aerobic ammonia-dependent chemolithotrophy in bacteria and Thaumarchaeota , 2016, The ISME Journal.

[47]  Desheng Li,et al.  Process of nitrogen transformation and microbial community structure in the Fe(0)–carbon-based bio-carrier filled in biological aerated filter , 2016, Environmental Science and Pollution Research.

[48]  Yueqiang Li,et al.  An integrated environmental decision support system for water pollution control based on TMDL--A case study in the Beiyun River watershed. , 2015, Journal of environmental management.

[49]  Yongzhen Peng,et al.  Abundance and diversity based on amoA genes of ammonia-oxidizing archaea and bacteria in ten wastewater treatment systems , 2014, Applied Microbiology and Biotechnology.

[50]  Michael Obersteiner,et al.  Human-induced nitrogen–phosphorus imbalances alter natural and managed ecosystems across the globe , 2013, Nature Communications.

[51]  B. Bohannan,et al.  Response of Free-Living Nitrogen-Fixing Microorganisms to Land Use Change in the Amazon Rainforest , 2013, Applied and Environmental Microbiology.

[52]  D. Myrold,et al.  Use of Aliphatic n-Alkynes To Discriminate Soil Nitrification Activities of Ammonia-Oxidizing Thaumarchaea and Bacteria , 2013, Applied and Environmental Microbiology.

[53]  C. Yin,et al.  Hotspots of anaerobic ammonium oxidation at land–freshwater interfaces , 2013 .

[54]  J. Prosser,et al.  Archaeal and bacterial ammonia-oxidisers in soil: the quest for niche specialisation and differentiation. , 2012, Trends in microbiology.

[55]  MokheleBataung,et al.  Review: Nitrogen assimilation in crop plants and its affecting factors , 2012 .

[56]  Mary Firestone,et al.  Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska. , 2012, Environmental microbiology.

[57]  J Pastor,et al.  Heavy metals, salts and organic residues in old solid urban waste landfills and surface waters in their discharge areas: determinants for restoring their impact. , 2012, Journal of environmental management.

[58]  Feng Luo,et al.  Molecular ecological network analyses , 2012, BMC Bioinformatics.

[59]  S. Salzberg,et al.  FLASH: fast length adjustment of short reads to improve genome assemblies , 2011, Bioinform..

[60]  J. S. Sinninghe Damsté,et al.  Enrichment and Characterization of an Autotrophic Ammonia-Oxidizing Archaeon of Mesophilic Crenarchaeal Group I.1a from an Agricultural Soil , 2011, Applied and Environmental Microbiology.

[61]  Yu Wang,et al.  Quantitative analyses of ammonia-oxidizing Archaea and bacteria in the sediments of four nitrogen-rich wetlands in China , 2011, Applied Microbiology and Biotechnology.

[62]  S. Hamilton,et al.  Nitrous oxide emission from denitrification in stream and river networks , 2010, Proceedings of the National Academy of Sciences.

[63]  D. Stahl,et al.  Ammonia oxidation kinetics determine niche separation of nitrifying Archaea and Bacteria , 2009, Nature.

[64]  M. V. van Loosdrecht,et al.  Nitrous oxide emission during wastewater treatment. , 2009, Water research.

[65]  H. Hunter,et al.  Nitrate removal, denitrification and nitrous oxide production in the riparian zone of an ephemeral stream. , 2009 .

[66]  L. Maiorano,et al.  Changes in land-use/land-cover patterns in Italy and their implications for biodiversity conservation , 2007, Landscape Ecology.

[67]  E. Bock,et al.  Immunocytochemical localization of membrane-bound ammonia monooxygenase in cells of ammonia oxidizing bacteria , 2006, Archives of Microbiology.

[68]  W. Shuster,et al.  Impacts of impervious surface on watershed hydrology: A review , 2005 .

[69]  J. Beman,et al.  Ubiquity and diversity of ammonia-oxidizing archaea in water columns and sediments of the ocean. , 2005, Proceedings of the National Academy of Sciences of the United States of America.

[70]  M. Könneke,et al.  Isolation of an autotrophic ammonia-oxidizing marine archaeon , 2005, Nature.

[71]  J. Schoonover,et al.  Nutrient Attenuation in Agricultural Surface Runoff by Riparian Buffer Zones in Southern Illinois, USA , 2005, Agroforestry Systems.

[72]  J. Newbold,et al.  Riparian deforestation, stream narrowing, and loss of stream ecosystem services. , 2004, Proceedings of the National Academy of Sciences of the United States of America.

[73]  B. Ward Nitrification and denitrification: Probing the nitrogen cycle in aquatic environments , 1996, Microbial Ecology.

[74]  W. Ripl Water: the bloodstream of the biosphere. , 2003, Philosophical transactions of the Royal Society of London. Series B, Biological sciences.

[75]  R. E. Turner,et al.  Global patterns of dissolved N, P and Si in large rivers , 2003 .

[76]  L. Schipper,et al.  Is the microbial community in a soil with reduced catabolic diversity less resistant to stress or disturbance , 2001 .

[77]  G. Kowalchuk,et al.  Ammonia-oxidizing bacteria: a model for molecular microbial ecology. , 2001, Annual review of microbiology.

[78]  Penny J Johnes,et al.  Evaluation and management of the impact of land use change on the nitrogen and phosphorus load delivered to surface waters: the export coefficient modelling approach , 1996 .

[79]  S. K. Jenson,et al.  Extracting topographic structure from digital elevation data for geographic information-system analysis , 1988 .

[80]  L. Belser,et al.  Specific Inhibition of Nitrite Oxidation by Chlorate and Its Use in Assessing Nitrification in Soils and Sediments , 1980, Applied and environmental microbiology.

[81]  G. Frankland,et al.  II. The nitrifying process and its specific ferment , 1890, Proceedings of the Royal Society of London.