Characterization of a large sex determination region in Salix purpurea L. (Salicaceae)

[1]  Yongwook Choi,et al.  Dominance and Sexual Dimorphism Pervade the Salix purpurea L. Transcriptome , 2017, Genome biology and evolution.

[2]  J. Mank,et al.  Recent Sex Chromosome Divergence despite Ancient Dioecy in the Willow Salix viminalis , 2017, Molecular biology and evolution.

[3]  S. Berlin,et al.  Allelic incompatibility can explain female biased sex ratios in dioecious plants , 2017, BMC Genomics.

[4]  Q. Lu,et al.  PPR-SMR protein SOT1 has RNA endonuclease activity , 2017, Proceedings of the National Academy of Sciences.

[5]  Ke Gong,et al.  A Complete and Accurate Short Sequence Alignment Algorithm for Repeats , 2016 .

[6]  Lyle A. Simmons,et al.  MutS2 Promotes Homologous Recombination in Bacillus subtilis , 2016, Journal of bacteriology.

[7]  Itay Mayrose,et al.  Polyploidy and sexual system in angiosperms: Is there an association? , 2016, American journal of botany.

[8]  T. Yin,et al.  Major Chromosomal Rearrangements Distinguish Willow and Poplar After the Ancestral “Salicoid” Genome Duplication , 2016, Genome biology and evolution.

[9]  D. Charlesworth Plant Sex Chromosomes. , 2016, Annual review of plant biology.

[10]  R. Azad,et al.  Deciphering evolutionary strata on plant sex chromosomes and fungal mating-type chromosomes through compositional segmentation , 2016, Plant Molecular Biology.

[11]  T. Yin,et al.  Confirmation of Single-Locus Sex Determination and Female Heterogamety in Willow Based on Linkage Analysis , 2016, PloS one.

[12]  G. Luikart,et al.  Harnessing the power of RADseq for ecological and evolutionary genomics , 2016, Nature Reviews Genetics.

[13]  D. Charlesworth Plant contributions to our understanding of sex chromosome evolution. , 2015, The New phytologist.

[14]  R. Hobza,et al.  The genomics of plant sex chromosomes. , 2015, Plant science : an international journal of experimental plant biology.

[15]  C. Hefer,et al.  Recent Y chromosome divergence despite ancient origin of dioecy in poplars (Populus). , 2015, Molecular ecology.

[16]  T. Yin,et al.  Different autosomes evolved into sex chromosomes in the sister genera of Salix and Populus , 2015, Scientific Reports.

[17]  Fred E. Gouker,et al.  Ploidy Level Affects Important Biomass Traits of Novel Shrub Willow (Salix) Hybrids , 2015, BioEnergy Research.

[18]  S. Berlin,et al.  Single locus sex determination and female heterogamety in the basket willow (Salix viminalis L.) , 2015, Heredity.

[19]  S. Renner The relative and absolute frequencies of angiosperm sexual systems: dioecy, monoecy, gynodioecy, and an updated online database. , 2014, American journal of botany.

[20]  Hong Ma,et al.  Detection of genomic variations and DNA polymorphisms and impact on analysis of meiotic recombination and genetic mapping , 2014, Proceedings of the National Academy of Sciences.

[21]  L. Beukeboom,et al.  The Evolution of Sex Determination , 2014 .

[22]  B. Kersten,et al.  The sex-linked region in Populus tremuloides Turesson 141 corresponds to a pericentromeric region of about two million base pairs on P. trichocarpa chromosome 19. , 2014, Plant biology.

[23]  Robert J. Elshire,et al.  TASSEL-GBS: A High Capacity Genotyping by Sequencing Analysis Pipeline , 2014, PloS one.

[24]  T. Ashman,et al.  Revisiting the Dioecy-Polyploidy Association: Alternate Pathways and Research Opportunities , 2013, Cytogenetic and Genome Research.

[25]  Emily C. Moore,et al.  Polygenic sex determination , 2013, Current Biology.

[26]  M. Ohme-Takagi,et al.  Evolutionarily conserved repressive activity of WOX proteins mediates leaf blade outgrowth and floral organ development in plants , 2012, Proceedings of the National Academy of Sciences.

[27]  Richard S. Gardner,et al.  Widespread Triploidy in Western North American Aspen (Populus tremuloides) , 2012, PloS one.

[28]  Jeffrey Ross-Ibarra,et al.  Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution , 2012, Genome Biology.

[29]  Jong-Kuk Na,et al.  Sequencing papaya X and Yh chromosomes reveals molecular basis of incipient sex chromosome evolution , 2012, Proceedings of the National Academy of Sciences.

[30]  Paolo Fontana,et al.  Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms , 2012, BMC Bioinformatics.

[31]  T. Tschaplinski,et al.  The obscure events contributing to the evolution of an incipient sex chromosome in Populus: a retrospective working hypothesis , 2012, Tree Genetics & Genomes.

[32]  David M. Goodstein,et al.  Phytozome: a comparative platform for green plant genomics , 2011, Nucleic Acids Res..

[33]  Erin T. Hamanishi,et al.  In Posidonia oceanica cadmium induces changes in DNA methylation and chromatin patterning , 2011, Journal of experimental botany.

[34]  Deborah Charlesworth,et al.  About PAR: the distinct evolutionary dynamics of the pseudoautosomal region. , 2011, Trends in genetics : TIG.

[35]  K. Fukui,et al.  Structure and Function of the Small MutS-Related Domain , 2011, Molecular biology international.

[36]  Robert J. Elshire,et al.  A Robust, Simple Genotyping-by-Sequencing (GBS) Approach for High Diversity Species , 2011, PloS one.

[37]  R. Ming,et al.  Sex chromosomes in land plants. , 2011, Annual review of plant biology.

[38]  M. DePristo,et al.  A framework for variation discovery and genotyping using next-generation DNA sequencing data , 2011, Nature Genetics.

[39]  Ian Shield,et al.  Genetic improvement of willow for bioenergy and biofuels. , 2011, Journal of integrative plant biology.

[40]  A. Gnirke,et al.  High-quality draft assemblies of mammalian genomes from massively parallel sequence data , 2010, Proceedings of the National Academy of Sciences.

[41]  Pjotr Prins,et al.  R/qtl: high-throughput multiple QTL mapping , 2010, Bioinform..

[42]  M. Kirkpatrick,et al.  Transitions Between Male and Female Heterogamety Caused by Sex-Antagonistic Selection , 2010, Genetics.

[43]  G. Scarascia Mugnozza,et al.  Genetic linkage maps of Populus alba L. and comparative mapping analysis of sex determination across Populus species , 2010, Tree Genetics & Genomes.

[44]  S. Koren,et al.  Assembly algorithms for next-generation sequencing data. , 2010, Genomics.

[45]  H. Kang,et al.  Variance component model to account for sample structure in genome-wide association studies , 2010, Nature Genetics.

[46]  M. Fladung,et al.  Genetic linkage mapping in aspen (Populus tremula L. and Populus tremuloides Michx.) , 2009, Tree Genetics & Genomes.

[47]  G. Cai,et al.  Organelle motility in the pollen tube: a tale of 20 years. , 2009, Journal of experimental botany.

[48]  D. Charlesworth,et al.  The evolution of restricted recombination in sex chromosomes. , 2009, Trends in ecology & evolution.

[49]  J. Mank Sex Chromosomes and the Evolution of Sexual Dimorphism: Lessons from the Genome , 2008, The American Naturalist.

[50]  G. Tuskan,et al.  Genome structure and emerging evidence of an incipient sex chromosome in Populus. , 2008, Genome research.

[51]  Q. Cronk,et al.  Sequence characterization of the putatively sex-linked Ssu72 -like locus in willow and its homologue in poplar , 2007 .

[52]  M. Kirkpatrick,et al.  Turnover of sex chromosomes induced by sexual conflict , 2007, Nature.

[53]  Y. Suyama,et al.  What makes the sex ratio female‐biased in the dioecious tree Salix sachalinensis? , 2007 .

[54]  Ziheng Yang PAML 4: phylogenetic analysis by maximum likelihood. , 2007, Molecular biology and evolution.

[55]  P. Moore,et al.  Genomics of sex chromosomes. , 2007, Current opinion in plant biology.

[56]  G. Aas,et al.  Inter- and Intraspecific Variation in Floral Scent in the Genus Salix and its Implication for Pollination , 2007, Journal of Chemical Ecology.

[57]  G. Mugnozza,et al.  Genetic linkage maps of Populus nigra L. including AFLPs, SSRs, SNPs, and sex trait , 2007, Tree Genetics & Genomes.

[58]  K. Fukui,et al.  Nuclease activity of the MutS homologue MutS2 from Thermus thermophilus is confined to the Smr domain , 2007, Nucleic acids research.

[59]  D. Charlesworth Evolution of Plant Breeding Systems , 2006, Current Biology.

[60]  M. Gribskov,et al.  The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) , 2006, Science.

[61]  D. Reich,et al.  Principal components analysis corrects for stratification in genome-wide association studies , 2006, Nature Genetics.

[62]  P. Rouzé,et al.  EST data suggest that poplar is an ancient polyploid. , 2005, The New phytologist.

[63]  T. Kunkel,et al.  DNA mismatch repair. , 2005, Annual review of biochemistry.

[64]  D. Charlesworth,et al.  A Gradual Process of Recombination Restriction in the Evolutionary History of the Sex Chromosomes in Dioecious Plants , 2004, PLoS biology.

[65]  W. Judd,et al.  An extinct genus of Salicaceae based on twigs with attached flowers, fruits, and foliage from the Eocene Green River Formation of Utah and Colorado, USA. , 2003, American journal of botany.

[66]  J. Kollmann,et al.  Pollen vectors and inflorescence morphology in four species of Salix , 2002, Plant Systematics and Evolution.

[67]  K. Irie,et al.  Expansion of the Cell Plate in Plant Cytokinesis Requires a Kinesin-like Protein/MAPKKK Complex , 2002, Cell.

[68]  C. Ainsworth,et al.  Boys and Girls Come Out to Play: The Molecular Biology of Dioecious Plants , 2000 .

[69]  J. Harper,et al.  DEMOGRAPHIC STUDIES OF A DIOECIOUS TREE. I. COLONIZATION, SEX AND AGE STRUCTURE OF A POPULATION OF SALIX CINEREA , 1989 .

[70]  E. Charnov The theory of sex allocation. , 1984, Monographs in population biology.

[71]  W. Rice SEX CHROMOSOMES AND THE EVOLUTION OF SEXUAL DIMORPHISM , 1984, Evolution; international journal of organic evolution.

[72]  D. Lloyd Evolution towards dioecy in heterostylous populations , 1979, Plant Systematics and Evolution.

[73]  B. Charlesworth,et al.  Population genetics of partial male-sterility and the evolution of monoecy and dioecy , 1978, Heredity.

[74]  F. Peto CYTOLOGY OF POPLAR SPECIES AND NATURAL HYBRIDS , 1938 .

[75]  A. Groover,et al.  Comparative and Evolutionary Genomics of Angiosperm Trees , 2017, Plant Genetics and Genomics: Crops and Models.

[76]  B. Kersten,et al.  A simple PCR-based marker to determine sex in aspen. , 2015, Plant biology.

[77]  J. Isebrands,et al.  Poplars and willows of the world, with emphasis on silviculturally important species. , 2014 .

[78]  L. Bruno,et al.  Sexual dimorphism in flowering plants , 2012 .

[79]  G. Slavov,et al.  Salient Biological Features, Systematics, and Genetic Variation of Populus , 2010 .

[80]  D. Charlesworth,et al.  Evolutionary strata on the X chromosomes of the dioecious plant Silene latifolia: evidence from new sex-linked genes. , 2007, Genetics.

[81]  D. Frayer SEXUAL DIMORPHISM , 2005 .

[82]  M. Lascoux,et al.  Identification of a RAPD marker linked to sex determination in the basket willow (Salix viminalis L.) , 1998 .

[83]  G. Argus Infrageneric classification of Salix(Salicaceae) in the New World , 1997 .

[84]  E. Charnov,et al.  Changes in the heterogametic mechanism of sex determination , 1977, Heredity.

[85]  M. Westergaard The mechanism of sex determination in dioecious flowering plants. , 1958, Advances in genetics.

[86]  M. Kirkpatrick,et al.  Ecology, Evolution and Organismal Biology Publications Ecology, Evolution and Organismal Biology Sex Determination: Why so Many Ways of Doing It? Essay Sex Determination: Why so Many Ways of Doing It? , 2022 .

[87]  Ramani Gade,et al.  SEAWEEDS : A NOVEL BIOMATERIAL , 2022 .