Age-dependent gain of alternative splice forms and biased duplication explain the relation between splicing and duplication.
暂无分享,去创建一个
[1] Huanming Yang,et al. Origin and evolution of new exons in rodents. , 2005, Genome research.
[2] B. Graveley. Alternative splicing: increasing diversity in the proteomic world. , 2001, Trends in genetics : TIG.
[3] Adi Doron-Faigenboim,et al. The “Alternative” Choice of Constitutive Exons throughout Evolution , 2007, PLoS genetics.
[4] Eugene V. Koonin,et al. Constraints and plasticity in genome and molecular-phenome evolution , 2010, Nature Reviews Genetics.
[5] V. Ingram. The evolution of a protein. , 1962, Federation proceedings.
[6] L. Wagner,et al. 21. UniGene: A Unified View of the Transcriptome , 2003 .
[7] P. Bork,et al. Alternative splicing and genome complexity , 2002, Nature Genetics.
[8] Joel Dudley,et al. TimeTree: a public knowledge-base of divergence times among organisms , 2006, Bioinform..
[9] Nicholas H. Putnam,et al. The amphioxus genome and the evolution of the chordate karyotype , 2008, Nature.
[10] J. Clemente,et al. The evolutionary relationship between gene duplication and alternative splicing. , 2008, Gene.
[11] M. Albà,et al. Inverse relationship between evolutionary rate and age of mammalian genes. , 2005, Molecular biology and evolution.
[12] X. Gu,et al. Evolution of alternative splicing after gene duplication. , 2005, Genome research.
[13] T. Chakraborty,et al. Comparative Genomics and Evolution of Virulence , 2008 .
[14] M. Lynch,et al. The evolutionary fate and consequences of duplicate genes. , 2000, Science.
[15] J. Garcia-Fernández,et al. Widespread evolutionary conservation of alternatively spliced exons in Caenorhabditis. , 2008, Molecular biology and evolution.
[16] A. N. Spiridonov,et al. Distinct Patterns of Expression and Evolution of Intronless and Intron-Containing Mammalian Genes , 2010, Molecular biology and evolution.
[17] Andrew M. Jenkinson,et al. Ensembl 2009 , 2008, Nucleic Acids Res..
[18] M J Thomsom,et al. An alternative. , 1970, The American journal of psychiatry.
[19] Peer Bork,et al. Alternative splicing and evolution. , 2003, BioEssays : news and reviews in molecular, cellular and developmental biology.
[20] C. Chothia,et al. Evolution of the Protein Repertoire , 2003, Science.
[21] Eric T. Wang,et al. Alternative Isoform Regulation in Human Tissue Transcriptomes , 2008, Nature.
[22] G. Ast,et al. Different levels of alternative splicing among eukaryotes , 2006, Nucleic acids research.
[23] Tomaso Poggio,et al. Identification and analysis of alternative splicing events conserved in human and mouse. , 2005, Proceedings of the National Academy of Sciences of the United States of America.
[24] Sébastien Moretti,et al. Bgee: Integrating and Comparing Heterogeneous Transcriptome Data Among Species , 2008, DILS.
[25] M. Albà,et al. On homology searches by protein Blast and the characterization of the age of genes , 2007, BMC Evolutionary Biology.
[26] Sarah A. Teichmann,et al. The (In)dependence of Alternative Splicing and Gene Duplication , 2007, PLoS Comput. Biol..
[27] Damian Smedley,et al. BioMart – biological queries made easy , 2009, BMC Genomics.
[28] Ziheng Yang,et al. PAML: a program package for phylogenetic analysis by maximum likelihood , 1997, Comput. Appl. Biosci..
[29] Albert J. Vilella,et al. EnsemblCompara GeneTrees: Complete, duplication-aware phylogenetic trees in vertebrates. , 2009, Genome research.
[30] Doron Lancet,et al. Alternative splicing and gene duplication are inversely correlated evolutionary mechanisms , 2005, Nature Genetics.
[31] María Martín,et al. The Universal Protein Resource (UniProt) in 2010 , 2010 .
[32] G. Ast,et al. Alternative splicing and evolution: diversification, exon definition and function , 2010, Nature Reviews Genetics.
[33] Yoshiharu Sato,et al. H-DBAS: human-transcriptome database for alternative splicing: update 2010 , 2009, Nucleic Acids Res..
[34] M. Robinson‐Rechavi,et al. How confident can we be that orthologs are similar, but paralogs differ? , 2009, Trends in genetics : TIG.
[35] F. Kondrashov,et al. The evolution of gene duplications: classifying and distinguishing between models , 2010, Nature Reviews Genetics.
[36] David Haussler,et al. The UCSC Genome Browser database: update 2010 , 2009, Nucleic Acids Res..
[37] Baris E. Suzek,et al. The Universal Protein Resource (UniProt) in 2010 , 2009, Nucleic Acids Res..
[38] K. H. Wolfe,et al. Not born equal: increased rate asymmetry in relocated and retrotransposed rodent gene duplicates. , 2006, Molecular biology and evolution.
[39] Eugene V Koonin,et al. The universal distribution of evolutionary rates of genes and distinct characteristics of eukaryotic genes of different apparent ages , 2009, Proceedings of the National Academy of Sciences.
[40] D. Graur,et al. The "inverse relationship between evolutionary rate and age of mammalian genes" is an artifact of increased genetic distance with rate of evolution and time of divergence. , 2006, Molecular biology and evolution.
[41] Mary Goldman,et al. The UCSC Genome Browser database: update 2011 , 2010, Nucleic Acids Res..
[42] J. Civetta. The inverse relationship between cost and survival. , 1973, The Journal of surgical research.
[43] M. Gelfand,et al. Comparative Genomics and Evolution of Alternative Splicing: The Pessimists′ Science , 2007 .